RNA–Protein interactions for RNA: ENST00000269228.9

NPC1-201, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPC1, Length 5,157 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-201ENST00000269228 DNAH11Q96DT5 4516 aa6.27□□□□□ -1.4
NPC1-201ENST00000269228 KRTAP3-2Q9BYR7 98 aa6.22□□□□□ -1.41
NPC1-201ENST00000269228 VPS13DQ5THJ4 4388 aa6.21□□□□□ -1.42
NPC1-201ENST00000269228 DYNC1H1Q14204 4646 aaKnown RBP6.17□□□□□ -1.42
NPC1-201ENST00000269228 STARD9Q9P2P6 4700 aa6.15□□□□□ -1.42
NPC1-201ENST00000269228 DNAH10Q8IVF4 4471 aa6.15□□□□□ -1.43
NPC1-201ENST00000269228 KRTAP15-1Q3LI76 137 aa6.14□□□□□ -1.43
NPC1-201ENST00000269228 DNAH17Q9UFH2 4485 aa6.13□□□□□ -1.43
NPC1-201ENST00000269228 PRKDCP78527 4128 aaKnown RBP6.11□□□□□ -1.43
NPC1-201ENST00000269228 FAT1Q14517 4588 aa6.09□□□□□ -1.43
NPC1-201ENST00000269228 LRP1BQ9NZR2 4599 aa6.09□□□□□ -1.43
NPC1-201ENST00000269228 RYR1P21817 5038 aa6.08□□□□□ -1.44
NPC1-201ENST00000269228 INE1O15225 51 aa6.07□□□□□ -1.44
NPC1-201ENST00000269228 ANK2Q01484 3957 aa6.01□□□□□ -1.45
NPC1-201ENST00000269228 KRTAP4-1Q9BYQ7 146 aa6□□□□□ -1.45
NPC1-201ENST00000269228 LORP23490 312 aaPredicted RBP5.99□□□□□ -1.45
NPC1-201ENST00000269228 DNAH2Q9P225 4427 aa5.98□□□□□ -1.45
NPC1-201ENST00000269228 KRTAP10-12P60413 245 aa5.97□□□□□ -1.45
NPC1-201ENST00000269228 FAT2Q9NYQ8 4349 aa5.94□□□□□ -1.46
NPC1-201ENST00000269228 DYNC2H1Q8NCM8 4307 aaKnown RBP5.93□□□□□ -1.46
NPC1-201ENST00000269228 SACSQ9NZJ4 4579 aa5.91□□□□□ -1.46
NPC1-201ENST00000269228 KIAA1109Q2LD37 5005 aa5.9□□□□□ -1.46
NPC1-201ENST00000269228 DNAH3Q8TD57 4116 aa5.88□□□□□ -1.47
NPC1-201ENST00000269228 KMT2AQ03164 3969 aa5.88□□□□□ -1.47
NPC1-201ENST00000269228 DNAH8Q96JB1 4490 aa5.85□□□□□ -1.47
NPC1-201ENST00000269228 MT1HP80294 61 aa5.84□□□□□ -1.47
NPC1-201ENST00000269228 RYR3Q15413 4870 aa5.83□□□□□ -1.48
NPC1-201ENST00000269228 LYSTQ99698 3801 aa5.79□□□□□ -1.48
NPC1-201ENST00000269228 KRTAP17-1Q9BYP8 105 aa5.78□□□□□ -1.48
NPC1-201ENST00000269228 KRTAP12-3P60328 96 aa5.77□□□□□ -1.49
NPC1-201ENST00000269228 VPS13BQ7Z7G8 4022 aa5.76□□□□□ -1.49
NPC1-201ENST00000269228 CRCT1Q9UGL9 99 aa5.76□□□□□ -1.49
NPC1-201ENST00000269228 APOBP04114 4563 aaKnown RBP5.75□□□□□ -1.49
NPC1-201ENST00000269228 LCE3AQ5TA76 89 aa5.75□□□□□ -1.49
NPC1-201ENST00000269228 CMYA5Q8N3K9 4069 aa5.73□□□□□ -1.49
NPC1-201ENST00000269228 MT2AP02795 61 aa5.73□□□□□ -1.49
NPC1-201ENST00000269228 MYCBP2O75592 4640 aa5.68□□□□□ -1.5
NPC1-201ENST00000269228 RYR2Q92736 4967 aa5.66□□□□□ -1.5
NPC1-201ENST00000269228 KRTAP23-1A1A580 65 aa5.63□□□□□ -1.51
NPC1-201ENST00000269228 KRTAP8-1Q8IUC2 63 aa5.63□□□□□ -1.51
NPC1-201ENST00000269228 MT1FP04733 61 aa5.62□□□□□ -1.51
NPC1-201ENST00000269228 LRP1Q07954 4544 aaKnown RBP5.61□□□□□ -1.51
NPC1-201ENST00000269228 DNAH6Q9C0G6 4158 aa5.6□□□□□ -1.51
NPC1-201ENST00000269228 SPRR2GQ9BYE4 73 aa5.59□□□□□ -1.52
NPC1-201ENST00000269228 HERC2O95714 4834 aa5.57□□□□□ -1.52
NPC1-201ENST00000269228 FAT3Q8TDW7 4589 aa5.54□□□□□ -1.52
NPC1-201ENST00000269228 HYDINQ4G0P3 5121 aa5.53□□□□□ -1.52
NPC1-201ENST00000269228 BIRC6Q9NR09 4857 aa5.53□□□□□ -1.52
NPC1-201ENST00000269228 DNAH7Q8WXX0 4024 aa5.52□□□□□ -1.53
NPC1-201ENST00000269228 HECTD4Q9Y4D8 3996 aa5.49□□□□□ -1.53
NPC1-201ENST00000269228 FRAS1Q86XX4 4008 aa5.44□□□□□ -1.54
NPC1-201ENST00000269228 HSPG2P98160 4391 aa5.4□□□□□ -1.54
NPC1-201ENST00000269228 PKHD1P08F94 4074 aa5.36□□□□□ -1.55
NPC1-201ENST00000269228 LRP2P98164 4655 aa5.36□□□□□ -1.55
NPC1-201ENST00000269228 PCLOQ9Y6V0 5065 aa5.35□□□□□ -1.55
NPC1-201ENST00000269228 SPRR2FQ96RM1 72 aa5.31□□□□□ -1.56
NPC1-201ENST00000269228 KRTAP19-1Q8IUB9 90 aa5.31□□□□□ -1.56
NPC1-201ENST00000269228 KMT2CQ8NEZ4 4911 aaKnown RBP5.3□□□□□ -1.56
NPC1-201ENST00000269228 HERC1Q15751 4861 aa5.29□□□□□ -1.56
NPC1-201ENST00000269228 KRTAP19-5Q3LI72 72 aa5.26□□□□□ -1.57
NPC1-201ENST00000269228 KRTAP19-8Q3LI54 63 aa5.25□□□□□ -1.57
NPC1-201ENST00000269228 PKD1P98161 4303 aa5.23□□□□□ -1.57
NPC1-201ENST00000269228 LCE2CQ5TA81 110 aa5.22□□□□□ -1.57
NPC1-201ENST00000269228 KRTAP10-5P60370 271 aa5.21□□□□□ -1.58
NPC1-201ENST00000269228 KRTAP9-8Q9BYQ0 159 aa5.21□□□□□ -1.58
NPC1-201ENST00000269228 KRTAP10-7P60409 375 aaPredicted RBP5.17□□□□□ -1.58
NPC1-201ENST00000269228 LPAP08519 4548 aa5.15□□□□□ -1.59
NPC1-201ENST00000269228 EPPK1P58107 5090 aaKnown RBP5.15□□□□□ -1.59
NPC1-201ENST00000269228 MT1BP07438 61 aa5.13□□□□□ -1.59
NPC1-201ENST00000269228 PKHD1L1Q86WI1 4243 aa5.12□□□□□ -1.59
NPC1-201ENST00000269228 MT1XP80297 61 aa5.1□□□□□ -1.59
NPC1-201ENST00000269228 ABCA13Q86UQ4 5058 aa5.1□□□□□ -1.59
NPC1-201ENST00000269228 KRTAP9-3Q9BYQ3 159 aa5.08□□□□□ -1.6
NPC1-201ENST00000269228 LCE3CQ5T5A8 94 aa5.07□□□□□ -1.6
NPC1-201ENST00000269228 KRTAP19-2Q3LHN2 52 aa5.01□□□□□ -1.61
NPC1-201ENST00000269228 TNXBP22105 4242 aa4.99□□□□□ -1.61
NPC1-201ENST00000269228 SPRR2EP22531 72 aa4.98□□□□□ -1.61
NPC1-201ENST00000269228 SPRR2BP35325 72 aa4.98□□□□□ -1.61
NPC1-201ENST00000269228 SPRR2AP35326 72 aa4.98□□□□□ -1.61
NPC1-201ENST00000269228 KRTAP4-8A0A0G2JLE6 195 aa4.95□□□□□ -1.62
NPC1-201ENST00000269228 KRTAP4-8Q9BYQ9 185 aa4.95□□□□□ -1.62
NPC1-201ENST00000269228 KRTAP19-4Q3LI73 84 aa4.93□□□□□ -1.62
NPC1-201ENST00000269228 LCE2BO14633 110 aa4.9□□□□□ -1.62
NPC1-201ENST00000269228 MUC17Q685J3 4493 aa4.88□□□□□ -1.63
NPC1-201ENST00000269228 UBR4Q5T4S7 5183 aa4.83□□□□□ -1.64
NPC1-201ENST00000269228 FLGP20930 4061 aaPredicted RBP4.83□□□□□ -1.64
NPC1-201ENST00000269228 RNF213Q63HN8 5207 aa4.82□□□□□ -1.64
NPC1-201ENST00000269228 SPRR2DP22532 72 aa4.81□□□□□ -1.64
NPC1-201ENST00000269228 FAT4Q6V0I7 4981 aa4.79□□□□□ -1.64
NPC1-201ENST00000269228 MT1GP13640 62 aa4.78□□□□□ -1.64
NPC1-201ENST00000269228 FSIP2Q5CZC0 6907 aa4.77□□□□□ -1.65
NPC1-201ENST00000269228 KRTAP9-2Q9BYQ4 174 aa4.69□□□□□ -1.66
NPC1-201ENST00000269228 LCE3BQ5TA77 95 aa4.68□□□□□ -1.66
NPC1-201ENST00000269228 LCE2AQ5TA79 106 aaPredicted RBP4.68□□□□□ -1.66
NPC1-201ENST00000269228 SPRR5A0A1B0GTR4 108 aa4.65□□□□□ -1.66
NPC1-201ENST00000269228 HMCN2Q8NDA2 5059 aa4.63□□□□□ -1.67
NPC1-201ENST00000269228 KRTAP19-3Q7Z4W3 81 aa4.63□□□□□ -1.67
NPC1-201ENST00000269228 KRTAP19-6Q3LI70 58 aa4.63□□□□□ -1.67
NPC1-201ENST00000269228 KRTAP12-4P60329 112 aa4.59□□□□□ -1.67
NPC1-201ENST00000269228 KRTAP4-7Q9BYR0 210 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms