RNA–Protein interactions for RNA: ENST00000258349.8

RC3H1-201, Transcript of ring finger and CCCH-type domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RC3H1, Length 10,988 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1-201ENST00000258349 ANK3Q12955 4377 aaKnown RBP2.24□□□□□ -2.05
RC3H1-201ENST00000258349 KMT2AQ03164 3969 aa2.23□□□□□ -2.05
RC3H1-201ENST00000258349 DNAH1Q9P2D7 4330 aa2.21□□□□□ -2.06
RC3H1-201ENST00000258349 KRTAP23-1A1A580 65 aa2.2□□□□□ -2.06
RC3H1-201ENST00000258349 KRTAP10-12P60413 245 aa2.19□□□□□ -2.06
RC3H1-201ENST00000258349 VPS13BQ7Z7G8 4022 aa2.19□□□□□ -2.06
RC3H1-201ENST00000258349 DNAH2Q9P225 4427 aa2.18□□□□□ -2.06
RC3H1-201ENST00000258349 KRTAP3-2Q9BYR7 98 aa2.15□□□□□ -2.06
RC3H1-201ENST00000258349 KRTAP3-3Q9BYR6 98 aa2.15□□□□□ -2.07
RC3H1-201ENST00000258349 HUWE1Q7Z6Z7 4374 aaKnown RBP2.14□□□□□ -2.07
RC3H1-201ENST00000258349 KRTAP12-3P60328 96 aa2.11□□□□□ -2.07
RC3H1-201ENST00000258349 FLGP20930 4061 aaPredicted RBP2.09□□□□□ -2.07
RC3H1-201ENST00000258349 PKHD1P08F94 4074 aa2.09□□□□□ -2.08
RC3H1-201ENST00000258349 MT1HL1P0DM35 61 aa2.07□□□□□ -2.08
RC3H1-201ENST00000258349 LCE3AQ5TA76 89 aa2.05□□□□□ -2.08
RC3H1-201ENST00000258349 CRCT1Q9UGL9 99 aa2.03□□□□□ -2.08
RC3H1-201ENST00000258349 KRTAP10-4P60372 401 aaPredicted RBP2.02□□□□□ -2.09
RC3H1-201ENST00000258349 DNAH9Q9NYC9 4486 aa2.02□□□□□ -2.09
RC3H1-201ENST00000258349 DYNC2H1Q8NCM8 4307 aaKnown RBP2.02□□□□□ -2.09
RC3H1-201ENST00000258349 VPS13DQ5THJ4 4388 aa2.01□□□□□ -2.09
RC3H1-201ENST00000258349 KRTAP19-4Q3LI73 84 aa2□□□□□ -2.09
RC3H1-201ENST00000258349 FAT2Q9NYQ8 4349 aa1.96□□□□□ -2.1
RC3H1-201ENST00000258349 KRTAP10-5P60370 271 aa1.96□□□□□ -2.1
RC3H1-201ENST00000258349 DNAH10Q8IVF4 4471 aa1.95□□□□□ -2.1
RC3H1-201ENST00000258349 KRTAP8-1Q8IUC2 63 aa1.95□□□□□ -2.1
RC3H1-201ENST00000258349 DNAH17Q9UFH2 4485 aa1.95□□□□□ -2.1
RC3H1-201ENST00000258349 PKHD1L1Q86WI1 4243 aa1.94□□□□□ -2.1
RC3H1-201ENST00000258349 RYR1P21817 5038 aa1.93□□□□□ -2.1
RC3H1-201ENST00000258349 MT3P25713 68 aa1.93□□□□□ -2.1
RC3H1-201ENST00000258349 DNAH11Q96DT5 4516 aa1.93□□□□□ -2.1
RC3H1-201ENST00000258349 LORP23490 312 aaPredicted RBP1.92□□□□□ -2.1
RC3H1-201ENST00000258349 KRTAP4-5Q9BYR2 181 aa1.92□□□□□ -2.1
RC3H1-201ENST00000258349 DNAH8Q96JB1 4490 aa1.9□□□□□ -2.1
RC3H1-201ENST00000258349 SPRR2GQ9BYE4 73 aa1.89□□□□□ -2.11
RC3H1-201ENST00000258349 KRTAP17-1Q9BYP8 105 aa1.87□□□□□ -2.11
RC3H1-201ENST00000258349 PKD1P98161 4303 aa1.87□□□□□ -2.11
RC3H1-201ENST00000258349 LCE3CQ5T5A8 94 aa1.87□□□□□ -2.11
RC3H1-201ENST00000258349 PLECQ15149 4684 aaKnown RBP1.85□□□□□ -2.11
RC3H1-201ENST00000258349 KRTAP10-7P60409 375 aaPredicted RBP1.84□□□□□ -2.12
RC3H1-201ENST00000258349 KRTAP19-5Q3LI72 72 aa1.84□□□□□ -2.12
RC3H1-201ENST00000258349 MT1HP80294 61 aa1.83□□□□□ -2.12
RC3H1-201ENST00000258349 STARD9Q9P2P6 4700 aa1.83□□□□□ -2.12
RC3H1-201ENST00000258349 TNXBP22105 4242 aa1.83□□□□□ -2.12
RC3H1-201ENST00000258349 KRTAP4-1Q9BYQ7 146 aa1.8□□□□□ -2.12
RC3H1-201ENST00000258349 DYNC1H1Q14204 4646 aaKnown RBP1.8□□□□□ -2.12
RC3H1-201ENST00000258349 MT2AP02795 61 aa1.79□□□□□ -2.12
RC3H1-201ENST00000258349 SACSQ9NZJ4 4579 aa1.78□□□□□ -2.12
RC3H1-201ENST00000258349 SPRR2FQ96RM1 72 aa1.77□□□□□ -2.13
RC3H1-201ENST00000258349 LRP1BQ9NZR2 4599 aa1.76□□□□□ -2.13
RC3H1-201ENST00000258349 DNHD1Q96M86 4753 aa1.76□□□□□ -2.13
RC3H1-201ENST00000258349 MT1FP04733 61 aa1.75□□□□□ -2.13
RC3H1-201ENST00000258349 DNAH5Q8TE73 4624 aa1.75□□□□□ -2.13
RC3H1-201ENST00000258349 HSPG2P98160 4391 aa1.72□□□□□ -2.13
RC3H1-201ENST00000258349 APOBP04114 4563 aaKnown RBP1.71□□□□□ -2.14
RC3H1-201ENST00000258349 RYR2Q92736 4967 aa1.71□□□□□ -2.14
RC3H1-201ENST00000258349 LCE3BQ5TA77 95 aa1.7□□□□□ -2.14
RC3H1-201ENST00000258349 KRTAP19-8Q3LI54 63 aa1.7□□□□□ -2.14
RC3H1-201ENST00000258349 RYR3Q15413 4870 aa1.69□□□□□ -2.14
RC3H1-201ENST00000258349 PCLOQ9Y6V0 5065 aa1.69□□□□□ -2.14
RC3H1-201ENST00000258349 SPRR5A0A1B0GTR4 108 aa1.69□□□□□ -2.14
RC3H1-201ENST00000258349 LRP1Q07954 4544 aaKnown RBP1.68□□□□□ -2.14
RC3H1-201ENST00000258349 MT1XP80297 61 aa1.68□□□□□ -2.14
RC3H1-201ENST00000258349 KRTAP12-4P60329 112 aa1.68□□□□□ -2.14
RC3H1-201ENST00000258349 FAT1Q14517 4588 aa1.67□□□□□ -2.14
RC3H1-201ENST00000258349 SPRR2EP22531 72 aa1.67□□□□□ -2.14
RC3H1-201ENST00000258349 SPRR2BP35325 72 aa1.67□□□□□ -2.14
RC3H1-201ENST00000258349 SPRR2AP35326 72 aa1.67□□□□□ -2.14
RC3H1-201ENST00000258349 FAT3Q8TDW7 4589 aa1.65□□□□□ -2.14
RC3H1-201ENST00000258349 KRTAP19-1Q8IUB9 90 aa1.65□□□□□ -2.15
RC3H1-201ENST00000258349 ABCA13Q86UQ4 5058 aa1.64□□□□□ -2.15
RC3H1-201ENST00000258349 LCE2BO14633 110 aa1.64□□□□□ -2.15
RC3H1-201ENST00000258349 MYCBP2O75592 4640 aa1.63□□□□□ -2.15
RC3H1-201ENST00000258349 MT1GP13640 62 aa1.63□□□□□ -2.15
RC3H1-201ENST00000258349 SPRR2DP22532 72 aa1.63□□□□□ -2.15
RC3H1-201ENST00000258349 LCE3DQ9BYE3 92 aa1.61□□□□□ -2.15
RC3H1-201ENST00000258349 UBR4Q5T4S7 5183 aa1.61□□□□□ -2.15
RC3H1-201ENST00000258349 LCE2DQ5TA82 110 aaPredicted RBP1.59□□□□□ -2.15
RC3H1-201ENST00000258349 LCE3EQ5T5B0 92 aa1.58□□□□□ -2.16
RC3H1-201ENST00000258349 HYDINQ4G0P3 5121 aa1.58□□□□□ -2.16
RC3H1-201ENST00000258349 MT1BP07438 61 aa1.58□□□□□ -2.16
RC3H1-201ENST00000258349 KRTAP9-8Q9BYQ0 159 aa1.57□□□□□ -2.16
RC3H1-201ENST00000258349 MUC17Q685J3 4493 aa1.57□□□□□ -2.16
RC3H1-201ENST00000258349 MT1LQ93083 61 aa1.56□□□□□ -2.16
RC3H1-201ENST00000258349 KRTAP9-3Q9BYQ3 159 aa1.55□□□□□ -2.16
RC3H1-201ENST00000258349 KRTAP19-3Q7Z4W3 81 aa1.54□□□□□ -2.16
RC3H1-201ENST00000258349 EPPK1P58107 5090 aaKnown RBP1.52□□□□□ -2.17
RC3H1-201ENST00000258349 MT1EP04732 61 aa1.51□□□□□ -2.17
RC3H1-201ENST00000258349 LCE2CQ5TA81 110 aa1.51□□□□□ -2.17
RC3H1-201ENST00000258349 KRTAP4-8A0A0G2JLE6 195 aa1.51□□□□□ -2.17
RC3H1-201ENST00000258349 KRTAP4-8Q9BYQ9 185 aa1.51□□□□□ -2.17
RC3H1-201ENST00000258349 KRTAP19-2Q3LHN2 52 aa1.5□□□□□ -2.17
RC3H1-201ENST00000258349 PRM1P04553 51 aa1.49□□□□□ -2.17
RC3H1-201ENST00000258349 MT1MQ8N339 61 aa1.47□□□□□ -2.17
RC3H1-201ENST00000258349 LPAP08519 4548 aa1.46□□□□□ -2.18
RC3H1-201ENST00000258349 KMT2CQ8NEZ4 4911 aaKnown RBP1.45□□□□□ -2.18
RC3H1-201ENST00000258349 LRP2P98164 4655 aa1.45□□□□□ -2.18
RC3H1-201ENST00000258349 KRTAP4-7Q9BYR0 210 aa1.43□□□□□ -2.18
RC3H1-201ENST00000258349 KRTAP9-6A0A140TA67 174 aa1.42□□□□□ -2.18
RC3H1-201ENST00000258349 KRTAP2-3P0C7H8 128 aa1.42□□□□□ -2.18
RC3H1-201ENST00000258349 KRTAP2-4Q9BYR9 128 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms