RNA–Protein interactions for RNA: ENST00000257181.9

PRPF38A-201, Transcript of pre-mRNA processing factor 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38A, Length 5,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-201ENST00000257181 SPEGQ15772 3267 aa5.49□□□□□ -1.53
PRPF38A-201ENST00000257181 DNAH8Q96JB1 4490 aa5.48□□□□□ -1.53
PRPF38A-201ENST00000257181 ANK2Q01484 3957 aa5.48□□□□□ -1.53
PRPF38A-201ENST00000257181 ZFHX3Q15911 3703 aa5.48□□□□□ -1.53
PRPF38A-201ENST00000257181 DCHS1Q96JQ0 3298 aa5.47□□□□□ -1.53
PRPF38A-201ENST00000257181 LORP23490 312 aaPredicted RBP5.46□□□□□ -1.53
PRPF38A-201ENST00000257181 LCE3AQ5TA76 89 aa5.45□□□□□ -1.54
PRPF38A-201ENST00000257181 MT1FP04733 61 aa5.42□□□□□ -1.54
PRPF38A-201ENST00000257181 RELNP78509 3460 aa5.41□□□□□ -1.54
PRPF38A-201ENST00000257181 BIRC6Q9NR09 4857 aa5.41□□□□□ -1.54
PRPF38A-201ENST00000257181 TRRAPQ9Y4A5 3859 aa5.39□□□□□ -1.55
PRPF38A-201ENST00000257181 MYO15AQ9UKN7 3530 aa5.39□□□□□ -1.55
PRPF38A-201ENST00000257181 INE1O15225 51 aa5.39□□□□□ -1.55
PRPF38A-201ENST00000257181 KRTAP19-8Q3LI54 63 aa5.38□□□□□ -1.55
PRPF38A-201ENST00000257181 CUBNO60494 3623 aa5.38□□□□□ -1.55
PRPF38A-201ENST00000257181 KRTAP10-7P60409 375 aaPredicted RBP5.38□□□□□ -1.55
PRPF38A-201ENST00000257181 SACSQ9NZJ4 4579 aa5.36□□□□□ -1.55
PRPF38A-201ENST00000257181 BSNQ9UPA5 3926 aa5.36□□□□□ -1.55
PRPF38A-201ENST00000257181 SPRR2FQ96RM1 72 aa5.35□□□□□ -1.55
PRPF38A-201ENST00000257181 DNHD1Q96M86 4753 aa5.34□□□□□ -1.55
PRPF38A-201ENST00000257181 CRCT1Q9UGL9 99 aa5.33□□□□□ -1.56
PRPF38A-201ENST00000257181 RYR2Q92736 4967 aa5.32□□□□□ -1.56
PRPF38A-201ENST00000257181 COL7A1Q02388 2944 aa5.31□□□□□ -1.56
PRPF38A-201ENST00000257181 RYR1P21817 5038 aa5.31□□□□□ -1.56
PRPF38A-201ENST00000257181 APOBP04114 4563 aaKnown RBP5.3□□□□□ -1.56
PRPF38A-201ENST00000257181 WDFY3Q8IZQ1 3526 aa5.29□□□□□ -1.56
PRPF38A-201ENST00000257181 KRTAP10-5P60370 271 aa5.29□□□□□ -1.56
PRPF38A-201ENST00000257181 FAT1Q14517 4588 aa5.25□□□□□ -1.57
PRPF38A-201ENST00000257181 SPRR2EP22531 72 aa5.22□□□□□ -1.57
PRPF38A-201ENST00000257181 SPRR2BP35325 72 aa5.22□□□□□ -1.57
PRPF38A-201ENST00000257181 SPRR2AP35326 72 aa5.22□□□□□ -1.57
PRPF38A-201ENST00000257181 KRTAP17-1Q9BYP8 105 aa5.21□□□□□ -1.58
PRPF38A-201ENST00000257181 PKHD1L1Q86WI1 4243 aa5.2□□□□□ -1.58
PRPF38A-201ENST00000257181 LCE2DQ5TA82 110 aaPredicted RBP5.2□□□□□ -1.58
PRPF38A-201ENST00000257181 RYR3Q15413 4870 aa5.19□□□□□ -1.58
PRPF38A-201ENST00000257181 DNAH7Q8WXX0 4024 aa5.17□□□□□ -1.58
PRPF38A-201ENST00000257181 FAT3Q8TDW7 4589 aa5.17□□□□□ -1.58
PRPF38A-201ENST00000257181 ASPMQ8IZT6 3477 aa5.16□□□□□ -1.58
PRPF38A-201ENST00000257181 PRKDCP78527 4128 aaKnown RBP5.13□□□□□ -1.59
PRPF38A-201ENST00000257181 SRRM2Q9UQ35 2752 aaKnown RBP5.13□□□□□ -1.59
PRPF38A-201ENST00000257181 STARD9Q9P2P6 4700 aa5.12□□□□□ -1.59
PRPF38A-201ENST00000257181 SPRR2DP22532 72 aa5.12□□□□□ -1.59
PRPF38A-201ENST00000257181 CSMD1Q96PZ7 3565 aa5.11□□□□□ -1.59
PRPF38A-201ENST00000257181 LRP1Q07954 4544 aaKnown RBP5.1□□□□□ -1.59
PRPF38A-201ENST00000257181 LAMA5O15230 3695 aa5.09□□□□□ -1.59
PRPF38A-201ENST00000257181 ZFHX4Q86UP3 3567 aa5.09□□□□□ -1.6
PRPF38A-201ENST00000257181 KRTAP9-8Q9BYQ0 159 aa5.08□□□□□ -1.6
PRPF38A-201ENST00000257181 CMYA5Q8N3K9 4069 aa5.07□□□□□ -1.6
PRPF38A-201ENST00000257181 LCE2BO14633 110 aa5.07□□□□□ -1.6
PRPF38A-201ENST00000257181 PCLOQ9Y6V0 5065 aa5.05□□□□□ -1.6
PRPF38A-201ENST00000257181 KRTAP19-5Q3LI72 72 aa5.04□□□□□ -1.6
PRPF38A-201ENST00000257181 FRAS1Q86XX4 4008 aa5.04□□□□□ -1.6
PRPF38A-201ENST00000257181 KRTAP19-1Q8IUB9 90 aa5.04□□□□□ -1.6
PRPF38A-201ENST00000257181 KRTAP9-3Q9BYQ3 159 aa5.04□□□□□ -1.6
PRPF38A-201ENST00000257181 HERC2O95714 4834 aa5.04□□□□□ -1.6
PRPF38A-201ENST00000257181 SVEP1Q4LDE5 3571 aa5.01□□□□□ -1.61
PRPF38A-201ENST00000257181 LCE2CQ5TA81 110 aa5.01□□□□□ -1.61
PRPF38A-201ENST00000257181 SPENQ96T58 3664 aaKnown RBP5.01□□□□□ -1.61
PRPF38A-201ENST00000257181 SMG1Q96Q15 3661 aaKnown RBP5□□□□□ -1.61
PRPF38A-201ENST00000257181 CSMD2Q7Z408 3487 aa5□□□□□ -1.61
PRPF38A-201ENST00000257181 VPS13BQ7Z7G8 4022 aa4.99□□□□□ -1.61
PRPF38A-201ENST00000257181 LCE3CQ5T5A8 94 aa4.98□□□□□ -1.61
PRPF38A-201ENST00000257181 KRTAP9-2Q9BYQ4 174 aa4.97□□□□□ -1.61
PRPF38A-201ENST00000257181 MT1GP13640 62 aa4.97□□□□□ -1.61
PRPF38A-201ENST00000257181 DMDP11532 3685 aa4.95□□□□□ -1.62
PRPF38A-201ENST00000257181 KRTAP12-4P60329 112 aa4.95□□□□□ -1.62
PRPF38A-201ENST00000257181 MT1BP07438 61 aa4.95□□□□□ -1.62
PRPF38A-201ENST00000257181 KRTAP9-6A0A140TA67 174 aa4.95□□□□□ -1.62
PRPF38A-201ENST00000257181 KRTAP19-6Q3LI70 58 aa4.92□□□□□ -1.62
PRPF38A-201ENST00000257181 MT1XP80297 61 aa4.9□□□□□ -1.63
PRPF38A-201ENST00000257181 MUC17Q685J3 4493 aa4.89□□□□□ -1.63
PRPF38A-201ENST00000257181 KMT2CQ8NEZ4 4911 aaKnown RBP4.86□□□□□ -1.63
PRPF38A-201ENST00000257181 MUC3AQ02505 3323 aa4.86□□□□□ -1.63
PRPF38A-201ENST00000257181 PKD1P98161 4303 aa4.82□□□□□ -1.64
PRPF38A-201ENST00000257181 ZNF469Q96JG9 3925 aaPredicted RBP4.8□□□□□ -1.64
PRPF38A-201ENST00000257181 LCE2AQ5TA79 106 aaPredicted RBP4.79□□□□□ -1.64
PRPF38A-201ENST00000257181 KIAA1109Q2LD37 5005 aa4.78□□□□□ -1.64
PRPF38A-201ENST00000257181 HECTD4Q9Y4D8 3996 aa4.78□□□□□ -1.64
PRPF38A-201ENST00000257181 VPS13CQ709C8 3753 aa4.77□□□□□ -1.65
PRPF38A-201ENST00000257181 KRTAP19-2Q3LHN2 52 aa4.74□□□□□ -1.65
PRPF38A-201ENST00000257181 KMT2AQ03164 3969 aa4.73□□□□□ -1.65
PRPF38A-201ENST00000257181 KRTAP19-3Q7Z4W3 81 aa4.72□□□□□ -1.65
PRPF38A-201ENST00000257181 PKHD1P08F94 4074 aa4.7□□□□□ -1.66
PRPF38A-201ENST00000257181 KRTAP6-3Q3LI67 103 aa4.66□□□□□ -1.66
PRPF38A-201ENST00000257181 LRP2P98164 4655 aa4.61□□□□□ -1.67
PRPF38A-201ENST00000257181 KRTAP20-1Q3LI63 56 aa4.61□□□□□ -1.67
PRPF38A-201ENST00000257181 LCE1AQ5T7P2 110 aa4.57□□□□□ -1.68
PRPF38A-201ENST00000257181 MT1LQ93083 61 aa4.57□□□□□ -1.68
PRPF38A-201ENST00000257181 LCE3BQ5TA77 95 aa4.57□□□□□ -1.68
PRPF38A-201ENST00000257181 KRTAP9-7A8MTY7 169 aa4.53□□□□□ -1.68
PRPF38A-201ENST00000257181 MT1EP04732 61 aa4.52□□□□□ -1.69
PRPF38A-201ENST00000257181 KRTAP2-3P0C7H8 128 aa4.51□□□□□ -1.69
PRPF38A-201ENST00000257181 KRTAP2-4Q9BYR9 128 aa4.51□□□□□ -1.69
PRPF38A-201ENST00000257181 TNXBP22105 4242 aa4.5□□□□□ -1.69
PRPF38A-201ENST00000257181 ABCA13Q86UQ4 5058 aa4.46□□□□□ -1.7
PRPF38A-201ENST00000257181 KRTAP4-8A0A0G2JLE6 195 aa4.41□□□□□ -1.7
PRPF38A-201ENST00000257181 KRTAP4-8Q9BYQ9 185 aa4.41□□□□□ -1.7
PRPF38A-201ENST00000257181 MT3P25713 68 aa4.4□□□□□ -1.71
PRPF38A-201ENST00000257181 MT1MQ8N339 61 aa4.39□□□□□ -1.71
PRPF38A-201ENST00000257181 FLGP20930 4061 aaPredicted RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms