RNA–Protein interactions for RNA: ENST00000253925.11

PPFIA1-201, Transcript of PTPRF interacting protein alpha 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PPFIA1, Length 5,234 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPFIA1-201ENST00000253925 VPS13DQ5THJ4 4388 aa8.86□□□□□ -0.99
PPFIA1-201ENST00000253925 DNAH11Q96DT5 4516 aa8.84□□□□□ -0.99
PPFIA1-201ENST00000253925 DNAH5Q8TE73 4624 aa8.84□□□□□ -0.99
PPFIA1-201ENST00000253925 DNAH17Q9UFH2 4485 aa8.84□□□□□ -0.99
PPFIA1-201ENST00000253925 STARD9Q9P2P6 4700 aa8.65□□□□□ -1.02
PPFIA1-201ENST00000253925 KRTAP4-5Q9BYR2 181 aa8.64□□□□□ -1.03
PPFIA1-201ENST00000253925 DNAH3Q8TD57 4116 aa8.6□□□□□ -1.03
PPFIA1-201ENST00000253925 DNAH8Q96JB1 4490 aa8.59□□□□□ -1.03
PPFIA1-201ENST00000253925 DNAH2Q9P225 4427 aa8.58□□□□□ -1.04
PPFIA1-201ENST00000253925 INE1O15225 51 aa8.56□□□□□ -1.04
PPFIA1-201ENST00000253925 DNHD1Q96M86 4753 aa8.53□□□□□ -1.04
PPFIA1-201ENST00000253925 LRP1BQ9NZR2 4599 aa8.51□□□□□ -1.05
PPFIA1-201ENST00000253925 DYNC1H1Q14204 4646 aaKnown RBP8.5□□□□□ -1.05
PPFIA1-201ENST00000253925 LORP23490 312 aaPredicted RBP8.46□□□□□ -1.06
PPFIA1-201ENST00000253925 FAT1Q14517 4588 aa8.45□□□□□ -1.06
PPFIA1-201ENST00000253925 DYNC2H1Q8NCM8 4307 aaKnown RBP8.43□□□□□ -1.06
PPFIA1-201ENST00000253925 PRKDCP78527 4128 aaKnown RBP8.41□□□□□ -1.06
PPFIA1-201ENST00000253925 ANK2Q01484 3957 aa8.39□□□□□ -1.07
PPFIA1-201ENST00000253925 SACSQ9NZJ4 4579 aa8.38□□□□□ -1.07
PPFIA1-201ENST00000253925 KRTAP23-1A1A580 65 aa8.37□□□□□ -1.07
PPFIA1-201ENST00000253925 KMT2AQ03164 3969 aa8.33□□□□□ -1.08
PPFIA1-201ENST00000253925 FAT2Q9NYQ8 4349 aa8.26□□□□□ -1.09
PPFIA1-201ENST00000253925 CMYA5Q8N3K9 4069 aa8.22□□□□□ -1.09
PPFIA1-201ENST00000253925 VPS13BQ7Z7G8 4022 aa8.21□□□□□ -1.09
PPFIA1-201ENST00000253925 KRTAP10-12P60413 245 aa8.21□□□□□ -1.1
PPFIA1-201ENST00000253925 KRTAP4-1Q9BYQ7 146 aa8.2□□□□□ -1.1
PPFIA1-201ENST00000253925 LCE3AQ5TA76 89 aa8.09□□□□□ -1.11
PPFIA1-201ENST00000253925 HECTD4Q9Y4D8 3996 aa8.09□□□□□ -1.11
PPFIA1-201ENST00000253925 FRAS1Q86XX4 4008 aa8.09□□□□□ -1.11
PPFIA1-201ENST00000253925 RYR1P21817 5038 aa8.08□□□□□ -1.12
PPFIA1-201ENST00000253925 APOBP04114 4563 aaKnown RBP8.07□□□□□ -1.12
PPFIA1-201ENST00000253925 KRTAP12-3P60328 96 aa8.07□□□□□ -1.12
PPFIA1-201ENST00000253925 LYSTQ99698 3801 aa8.06□□□□□ -1.12
PPFIA1-201ENST00000253925 DNAH6Q9C0G6 4158 aa8.04□□□□□ -1.12
PPFIA1-201ENST00000253925 DNAH7Q8WXX0 4024 aa8□□□□□ -1.13
PPFIA1-201ENST00000253925 MYCBP2O75592 4640 aa7.96□□□□□ -1.14
PPFIA1-201ENST00000253925 KIAA1109Q2LD37 5005 aa7.87□□□□□ -1.15
PPFIA1-201ENST00000253925 SPRR2GQ9BYE4 73 aa7.87□□□□□ -1.15
PPFIA1-201ENST00000253925 LRP1Q07954 4544 aaKnown RBP7.83□□□□□ -1.16
PPFIA1-201ENST00000253925 KRTAP17-1Q9BYP8 105 aa7.82□□□□□ -1.16
PPFIA1-201ENST00000253925 MT1HP80294 61 aa7.8□□□□□ -1.16
PPFIA1-201ENST00000253925 FAT3Q8TDW7 4589 aa7.78□□□□□ -1.16
PPFIA1-201ENST00000253925 RYR3Q15413 4870 aa7.77□□□□□ -1.17
PPFIA1-201ENST00000253925 MT2AP02795 61 aa7.75□□□□□ -1.17
PPFIA1-201ENST00000253925 RYR2Q92736 4967 aa7.72□□□□□ -1.17
PPFIA1-201ENST00000253925 HYDINQ4G0P3 5121 aa7.69□□□□□ -1.18
PPFIA1-201ENST00000253925 CRCT1Q9UGL9 99 aa7.65□□□□□ -1.18
PPFIA1-201ENST00000253925 MT1FP04733 61 aa7.63□□□□□ -1.19
PPFIA1-201ENST00000253925 PKHD1P08F94 4074 aa7.58□□□□□ -1.2
PPFIA1-201ENST00000253925 KRTAP8-1Q8IUC2 63 aa7.51□□□□□ -1.21
PPFIA1-201ENST00000253925 PKD1P98161 4303 aa7.51□□□□□ -1.21
PPFIA1-201ENST00000253925 LRP2P98164 4655 aa7.49□□□□□ -1.21
PPFIA1-201ENST00000253925 KRTAP19-1Q8IUB9 90 aa7.48□□□□□ -1.21
PPFIA1-201ENST00000253925 HSPG2P98160 4391 aa7.45□□□□□ -1.22
PPFIA1-201ENST00000253925 KRTAP19-8Q3LI54 63 aa7.38□□□□□ -1.23
PPFIA1-201ENST00000253925 KRTAP10-5P60370 271 aa7.37□□□□□ -1.23
PPFIA1-201ENST00000253925 PKHD1L1Q86WI1 4243 aa7.32□□□□□ -1.24
PPFIA1-201ENST00000253925 HERC2O95714 4834 aa7.32□□□□□ -1.24
PPFIA1-201ENST00000253925 KRTAP19-5Q3LI72 72 aa7.28□□□□□ -1.24
PPFIA1-201ENST00000253925 KMT2CQ8NEZ4 4911 aaKnown RBP7.24□□□□□ -1.25
PPFIA1-201ENST00000253925 LCE3CQ5T5A8 94 aa7.21□□□□□ -1.25
PPFIA1-201ENST00000253925 LCE2CQ5TA81 110 aa7.2□□□□□ -1.26
PPFIA1-201ENST00000253925 TNXBP22105 4242 aa7.2□□□□□ -1.26
PPFIA1-201ENST00000253925 SPRR5A0A1B0GTR4 108 aa7.18□□□□□ -1.26
PPFIA1-201ENST00000253925 MT1XP80297 61 aa7.17□□□□□ -1.26
PPFIA1-201ENST00000253925 KRTAP10-7P60409 375 aaPredicted RBP7.16□□□□□ -1.26
PPFIA1-201ENST00000253925 KRTAP9-8Q9BYQ0 159 aa7.15□□□□□ -1.26
PPFIA1-201ENST00000253925 KRTAP19-2Q3LHN2 52 aa7.15□□□□□ -1.26
PPFIA1-201ENST00000253925 MT1BP07438 61 aa7.14□□□□□ -1.27
PPFIA1-201ENST00000253925 LPAP08519 4548 aa7.13□□□□□ -1.27
PPFIA1-201ENST00000253925 KRTAP19-4Q3LI73 84 aa7.12□□□□□ -1.27
PPFIA1-201ENST00000253925 BIRC6Q9NR09 4857 aa7.03□□□□□ -1.28
PPFIA1-201ENST00000253925 HERC1Q15751 4861 aa7.02□□□□□ -1.29
PPFIA1-201ENST00000253925 MUC17Q685J3 4493 aa6.98□□□□□ -1.29
PPFIA1-201ENST00000253925 KRTAP9-3Q9BYQ3 159 aa6.94□□□□□ -1.3
PPFIA1-201ENST00000253925 FLGP20930 4061 aaPredicted RBP6.89□□□□□ -1.31
PPFIA1-201ENST00000253925 PCLOQ9Y6V0 5065 aa6.86□□□□□ -1.31
PPFIA1-201ENST00000253925 SPRR2FQ96RM1 72 aa6.77□□□□□ -1.33
PPFIA1-201ENST00000253925 EPPK1P58107 5090 aaKnown RBP6.76□□□□□ -1.33
PPFIA1-201ENST00000253925 ABCA13Q86UQ4 5058 aa6.76□□□□□ -1.33
PPFIA1-201ENST00000253925 KRTAP4-8A0A0G2JLE6 195 aa6.73□□□□□ -1.33
PPFIA1-201ENST00000253925 KRTAP4-8Q9BYQ9 185 aa6.73□□□□□ -1.33
PPFIA1-201ENST00000253925 LCE2BO14633 110 aa6.59□□□□□ -1.35
PPFIA1-201ENST00000253925 KRTAP12-4P60329 112 aa6.59□□□□□ -1.35
PPFIA1-201ENST00000253925 MT1GP13640 62 aa6.49□□□□□ -1.37
PPFIA1-201ENST00000253925 MT1LQ93083 61 aa6.42□□□□□ -1.38
PPFIA1-201ENST00000253925 FAT4Q6V0I7 4981 aa6.41□□□□□ -1.38
PPFIA1-201ENST00000253925 HMCN2Q8NDA2 5059 aa6.41□□□□□ -1.38
PPFIA1-201ENST00000253925 LCE3BQ5TA77 95 aa6.39□□□□□ -1.39
PPFIA1-201ENST00000253925 RNF213Q63HN8 5207 aa6.39□□□□□ -1.39
PPFIA1-201ENST00000253925 MT1EP04732 61 aa6.38□□□□□ -1.39
PPFIA1-201ENST00000253925 KRTAP4-7Q9BYR0 210 aa6.38□□□□□ -1.39
PPFIA1-201ENST00000253925 UBR4Q5T4S7 5183 aa6.3□□□□□ -1.4
PPFIA1-201ENST00000253925 KRTAP19-3Q7Z4W3 81 aa6.29□□□□□ -1.4
PPFIA1-201ENST00000253925 SPRR2EP22531 72 aa6.22□□□□□ -1.41
PPFIA1-201ENST00000253925 SPRR2BP35325 72 aa6.22□□□□□ -1.41
PPFIA1-201ENST00000253925 SPRR2AP35326 72 aa6.22□□□□□ -1.41
PPFIA1-201ENST00000253925 MUC2Q02817 5179 aa6.19□□□□□ -1.42
PPFIA1-201ENST00000253925 LCE2AQ5TA79 106 aaPredicted RBP6.16□□□□□ -1.42
PPFIA1-201ENST00000253925 KRTAP19-7Q3SYF9 63 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms