RNA–Protein interactions for RNA: ENST00000234256.3

SLC1A4-201, Transcript of solute carrier family 1 member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SLC1A4, Length 4,561 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A4-201ENST00000234256 DNAH10Q8IVF4 4471 aa7.76□□□□□ -1.17
SLC1A4-201ENST00000234256 ALMS1Q8TCU4 4167 aa7.75□□□□□ -1.17
SLC1A4-201ENST00000234256 FAT1Q14517 4588 aa7.73□□□□□ -1.17
SLC1A4-201ENST00000234256 DNAH1Q9P2D7 4330 aa7.73□□□□□ -1.17
SLC1A4-201ENST00000234256 VPS13DQ5THJ4 4388 aa7.71□□□□□ -1.18
SLC1A4-201ENST00000234256 PRKDCP78527 4128 aaKnown RBP7.7□□□□□ -1.18
SLC1A4-201ENST00000234256 LORP23490 312 aaPredicted RBP7.66□□□□□ -1.18
SLC1A4-201ENST00000234256 DNAH17Q9UFH2 4485 aa7.64□□□□□ -1.19
SLC1A4-201ENST00000234256 DNAH8Q96JB1 4490 aa7.63□□□□□ -1.19
SLC1A4-201ENST00000234256 ANK2Q01484 3957 aa7.63□□□□□ -1.19
SLC1A4-201ENST00000234256 KRTAP15-1Q3LI76 137 aa7.62□□□□□ -1.19
SLC1A4-201ENST00000234256 STARD9Q9P2P6 4700 aa7.61□□□□□ -1.19
SLC1A4-201ENST00000234256 LYSTQ99698 3801 aa7.61□□□□□ -1.19
SLC1A4-201ENST00000234256 RYR1P21817 5038 aa7.52□□□□□ -1.21
SLC1A4-201ENST00000234256 MYCBP2O75592 4640 aa7.52□□□□□ -1.21
SLC1A4-201ENST00000234256 LRP1BQ9NZR2 4599 aa7.52□□□□□ -1.21
SLC1A4-201ENST00000234256 KMT2AQ03164 3969 aa7.49□□□□□ -1.21
SLC1A4-201ENST00000234256 DNAH3Q8TD57 4116 aa7.48□□□□□ -1.21
SLC1A4-201ENST00000234256 DYNC1H1Q14204 4646 aaKnown RBP7.48□□□□□ -1.21
SLC1A4-201ENST00000234256 KIAA1109Q2LD37 5005 aa7.44□□□□□ -1.22
SLC1A4-201ENST00000234256 DNAH2Q9P225 4427 aa7.41□□□□□ -1.22
SLC1A4-201ENST00000234256 KRTAP10-12P60413 245 aa7.37□□□□□ -1.23
SLC1A4-201ENST00000234256 KRTAP4-1Q9BYQ7 146 aa7.35□□□□□ -1.23
SLC1A4-201ENST00000234256 CMYA5Q8N3K9 4069 aa7.35□□□□□ -1.23
SLC1A4-201ENST00000234256 DYNC2H1Q8NCM8 4307 aaKnown RBP7.33□□□□□ -1.24
SLC1A4-201ENST00000234256 FAT3Q8TDW7 4589 aa7.32□□□□□ -1.24
SLC1A4-201ENST00000234256 SACSQ9NZJ4 4579 aa7.3□□□□□ -1.24
SLC1A4-201ENST00000234256 HYDINQ4G0P3 5121 aa7.29□□□□□ -1.24
SLC1A4-201ENST00000234256 LCE3AQ5TA76 89 aa7.28□□□□□ -1.24
SLC1A4-201ENST00000234256 KRTAP12-3P60328 96 aa7.26□□□□□ -1.25
SLC1A4-201ENST00000234256 VPS13BQ7Z7G8 4022 aa7.2□□□□□ -1.26
SLC1A4-201ENST00000234256 RYR3Q15413 4870 aa7.19□□□□□ -1.26
SLC1A4-201ENST00000234256 CRCT1Q9UGL9 99 aa7.19□□□□□ -1.26
SLC1A4-201ENST00000234256 FAT2Q9NYQ8 4349 aa7.19□□□□□ -1.26
SLC1A4-201ENST00000234256 DNAH7Q8WXX0 4024 aa7.18□□□□□ -1.26
SLC1A4-201ENST00000234256 LRP1Q07954 4544 aaKnown RBP7.16□□□□□ -1.26
SLC1A4-201ENST00000234256 APOBP04114 4563 aaKnown RBP7.15□□□□□ -1.26
SLC1A4-201ENST00000234256 DNAH6Q9C0G6 4158 aa7.12□□□□□ -1.27
SLC1A4-201ENST00000234256 FRAS1Q86XX4 4008 aa7.06□□□□□ -1.28
SLC1A4-201ENST00000234256 KRTAP23-1A1A580 65 aa7.03□□□□□ -1.28
SLC1A4-201ENST00000234256 HECTD4Q9Y4D8 3996 aa7.02□□□□□ -1.29
SLC1A4-201ENST00000234256 PKHD1P08F94 4074 aa7.02□□□□□ -1.29
SLC1A4-201ENST00000234256 KMT2CQ8NEZ4 4911 aaKnown RBP7.01□□□□□ -1.29
SLC1A4-201ENST00000234256 KRTAP17-1Q9BYP8 105 aa7□□□□□ -1.29
SLC1A4-201ENST00000234256 INE1O15225 51 aa6.96□□□□□ -1.29
SLC1A4-201ENST00000234256 RYR2Q92736 4967 aa6.96□□□□□ -1.3
SLC1A4-201ENST00000234256 MT1HP80294 61 aa6.93□□□□□ -1.3
SLC1A4-201ENST00000234256 LRP2P98164 4655 aa6.92□□□□□ -1.3
SLC1A4-201ENST00000234256 MT2AP02795 61 aa6.91□□□□□ -1.3
SLC1A4-201ENST00000234256 MT1FP04733 61 aa6.83□□□□□ -1.32
SLC1A4-201ENST00000234256 SPRR2GQ9BYE4 73 aa6.83□□□□□ -1.32
SLC1A4-201ENST00000234256 HERC2O95714 4834 aa6.81□□□□□ -1.32
SLC1A4-201ENST00000234256 PCLOQ9Y6V0 5065 aa6.74□□□□□ -1.33
SLC1A4-201ENST00000234256 KRTAP8-1Q8IUC2 63 aa6.69□□□□□ -1.34
SLC1A4-201ENST00000234256 PKD1P98161 4303 aa6.68□□□□□ -1.34
SLC1A4-201ENST00000234256 HSPG2P98160 4391 aa6.65□□□□□ -1.34
SLC1A4-201ENST00000234256 KRTAP10-5P60370 271 aa6.65□□□□□ -1.34
SLC1A4-201ENST00000234256 EPPK1P58107 5090 aaKnown RBP6.62□□□□□ -1.35
SLC1A4-201ENST00000234256 KRTAP19-1Q8IUB9 90 aa6.61□□□□□ -1.35
SLC1A4-201ENST00000234256 BIRC6Q9NR09 4857 aa6.56□□□□□ -1.36
SLC1A4-201ENST00000234256 KRTAP19-5Q3LI72 72 aa6.55□□□□□ -1.36
SLC1A4-201ENST00000234256 LPAP08519 4548 aa6.54□□□□□ -1.36
SLC1A4-201ENST00000234256 FSIP2Q5CZC0 6907 aa6.46□□□□□ -1.37
SLC1A4-201ENST00000234256 KRTAP10-7P60409 375 aaPredicted RBP6.45□□□□□ -1.38
SLC1A4-201ENST00000234256 SYNE1Q8NF91 8797 aaKnown RBP6.44□□□□□ -1.38
SLC1A4-201ENST00000234256 ABCA13Q86UQ4 5058 aa6.42□□□□□ -1.38
SLC1A4-201ENST00000234256 RNF213Q63HN8 5207 aa6.41□□□□□ -1.38
SLC1A4-201ENST00000234256 PKHD1L1Q86WI1 4243 aa6.37□□□□□ -1.39
SLC1A4-201ENST00000234256 LCE3CQ5T5A8 94 aa6.37□□□□□ -1.39
SLC1A4-201ENST00000234256 KRTAP19-8Q3LI54 63 aa6.36□□□□□ -1.39
SLC1A4-201ENST00000234256 MUC2Q02817 5179 aa6.36□□□□□ -1.39
SLC1A4-201ENST00000234256 HERC1Q15751 4861 aa6.34□□□□□ -1.4
SLC1A4-201ENST00000234256 MT1XP80297 61 aa6.32□□□□□ -1.4
SLC1A4-201ENST00000234256 SPRR2FQ96RM1 72 aa6.3□□□□□ -1.4
SLC1A4-201ENST00000234256 MT1BP07438 61 aa6.3□□□□□ -1.4
SLC1A4-201ENST00000234256 KRTAP9-8Q9BYQ0 159 aa6.29□□□□□ -1.4
SLC1A4-201ENST00000234256 LCE2CQ5TA81 110 aa6.29□□□□□ -1.4
SLC1A4-201ENST00000234256 TNXBP22105 4242 aa6.27□□□□□ -1.41
SLC1A4-201ENST00000234256 KRTAP4-8A0A0G2JLE6 195 aa6.22□□□□□ -1.41
SLC1A4-201ENST00000234256 KRTAP4-8Q9BYQ9 185 aa6.22□□□□□ -1.41
SLC1A4-201ENST00000234256 UBR4Q5T4S7 5183 aa6.19□□□□□ -1.42
SLC1A4-201ENST00000234256 KRTAP19-2Q3LHN2 52 aa6.19□□□□□ -1.42
SLC1A4-201ENST00000234256 FAT4Q6V0I7 4981 aa6.17□□□□□ -1.42
SLC1A4-201ENST00000234256 MUC17Q685J3 4493 aa6.09□□□□□ -1.43
SLC1A4-201ENST00000234256 KRTAP9-3Q9BYQ3 159 aa6.08□□□□□ -1.44
SLC1A4-201ENST00000234256 OBSCNQ5VST9 7968 aa6.08□□□□□ -1.44
SLC1A4-201ENST00000234256 SPRR5A0A1B0GTR4 108 aa6.04□□□□□ -1.44
SLC1A4-201ENST00000234256 MT1GP13640 62 aa5.96□□□□□ -1.46
SLC1A4-201ENST00000234256 KRTAP19-4Q3LI73 84 aa5.96□□□□□ -1.46
SLC1A4-201ENST00000234256 FLGP20930 4061 aaPredicted RBP5.93□□□□□ -1.46
SLC1A4-201ENST00000234256 KRTAP4-7Q9BYR0 210 aa5.92□□□□□ -1.46
SLC1A4-201ENST00000234256 LCE3BQ5TA77 95 aa5.91□□□□□ -1.46
SLC1A4-201ENST00000234256 LCE2BO14633 110 aa5.9□□□□□ -1.46
SLC1A4-201ENST00000234256 KRTAP12-4P60329 112 aa5.83□□□□□ -1.48
SLC1A4-201ENST00000234256 HMCN2Q8NDA2 5059 aa5.79□□□□□ -1.48
SLC1A4-201ENST00000234256 SPRR2EP22531 72 aa5.73□□□□□ -1.49
SLC1A4-201ENST00000234256 SPRR2BP35325 72 aa5.73□□□□□ -1.49
SLC1A4-201ENST00000234256 SPRR2AP35326 72 aa5.73□□□□□ -1.49
SLC1A4-201ENST00000234256 MT1LQ93083 61 aa5.66□□□□□ -1.5
SLC1A4-201ENST00000234256 USH2AO75445 5202 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms