RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 ANK3Q12955 4377 aaKnown RBP2.01□□□□□ -2.09
CHD9-201ENST00000219084 SVEP1Q4LDE5 3571 aa2.01□□□□□ -2.09
CHD9-201ENST00000219084 HUWE1Q7Z6Z7 4374 aaKnown RBP2□□□□□ -2.09
CHD9-201ENST00000219084 CUBNO60494 3623 aa1.98□□□□□ -2.09
CHD9-201ENST00000219084 KRTAP10-12P60413 245 aa1.98□□□□□ -2.09
CHD9-201ENST00000219084 DNAH1Q9P2D7 4330 aa1.97□□□□□ -2.09
CHD9-201ENST00000219084 ZNF469Q96JG9 3925 aaPredicted RBP1.97□□□□□ -2.09
CHD9-201ENST00000219084 ANK2Q01484 3957 aa1.96□□□□□ -2.1
CHD9-201ENST00000219084 KRTAP10-4P60372 401 aaPredicted RBP1.96□□□□□ -2.1
CHD9-201ENST00000219084 MT1HL1P0DM35 61 aa1.95□□□□□ -2.1
CHD9-201ENST00000219084 FRAS1Q86XX4 4008 aa1.92□□□□□ -2.1
CHD9-201ENST00000219084 KRTAP12-3P60328 96 aa1.92□□□□□ -2.1
CHD9-201ENST00000219084 PRKDCP78527 4128 aaKnown RBP1.91□□□□□ -2.1
CHD9-201ENST00000219084 MT3P25713 68 aa1.9□□□□□ -2.1
CHD9-201ENST00000219084 DNAH2Q9P225 4427 aa1.9□□□□□ -2.11
CHD9-201ENST00000219084 FLGP20930 4061 aaPredicted RBP1.89□□□□□ -2.11
CHD9-201ENST00000219084 CSMD2Q7Z408 3487 aa1.89□□□□□ -2.11
CHD9-201ENST00000219084 CSMD3Q7Z407 3707 aa1.89□□□□□ -2.11
CHD9-201ENST00000219084 VPS13BQ7Z7G8 4022 aa1.89□□□□□ -2.11
CHD9-201ENST00000219084 KMT2AQ03164 3969 aa1.85□□□□□ -2.11
CHD9-201ENST00000219084 DYNC2H1Q8NCM8 4307 aaKnown RBP1.84□□□□□ -2.11
CHD9-201ENST00000219084 LCE3AQ5TA76 89 aa1.84□□□□□ -2.11
CHD9-201ENST00000219084 SPRR2GQ9BYE4 73 aa1.82□□□□□ -2.12
CHD9-201ENST00000219084 DNAH9Q9NYC9 4486 aa1.8□□□□□ -2.12
CHD9-201ENST00000219084 DNAH10Q8IVF4 4471 aa1.8□□□□□ -2.12
CHD9-201ENST00000219084 VPS13DQ5THJ4 4388 aa1.8□□□□□ -2.12
CHD9-201ENST00000219084 PKHD1P08F94 4074 aa1.79□□□□□ -2.12
CHD9-201ENST00000219084 DNAH11Q96DT5 4516 aa1.79□□□□□ -2.12
CHD9-201ENST00000219084 FAT2Q9NYQ8 4349 aa1.78□□□□□ -2.12
CHD9-201ENST00000219084 LORP23490 312 aaPredicted RBP1.74□□□□□ -2.13
CHD9-201ENST00000219084 KRTAP8-1Q8IUC2 63 aa1.74□□□□□ -2.13
CHD9-201ENST00000219084 PCLOQ9Y6V0 5065 aa1.73□□□□□ -2.13
CHD9-201ENST00000219084 PKHD1L1Q86WI1 4243 aa1.73□□□□□ -2.13
CHD9-201ENST00000219084 DNAH17Q9UFH2 4485 aa1.73□□□□□ -2.13
CHD9-201ENST00000219084 LCE3CQ5T5A8 94 aa1.72□□□□□ -2.13
CHD9-201ENST00000219084 DNAH8Q96JB1 4490 aa1.72□□□□□ -2.13
CHD9-201ENST00000219084 KRTAP4-5Q9BYR2 181 aa1.71□□□□□ -2.14
CHD9-201ENST00000219084 MT1HP80294 61 aa1.7□□□□□ -2.14
CHD9-201ENST00000219084 DYNC1H1Q14204 4646 aaKnown RBP1.7□□□□□ -2.14
CHD9-201ENST00000219084 STARD9Q9P2P6 4700 aa1.7□□□□□ -2.14
CHD9-201ENST00000219084 KRTAP10-5P60370 271 aa1.68□□□□□ -2.14
CHD9-201ENST00000219084 PLECQ15149 4684 aaKnown RBP1.68□□□□□ -2.14
CHD9-201ENST00000219084 KRTAP10-7P60409 375 aaPredicted RBP1.67□□□□□ -2.14
CHD9-201ENST00000219084 MT2AP02795 61 aa1.67□□□□□ -2.14
CHD9-201ENST00000219084 CRCT1Q9UGL9 99 aa1.67□□□□□ -2.14
CHD9-201ENST00000219084 KRTAP19-8Q3LI54 63 aa1.66□□□□□ -2.14
CHD9-201ENST00000219084 KRTAP4-1Q9BYQ7 146 aa1.65□□□□□ -2.14
CHD9-201ENST00000219084 KRTAP19-5Q3LI72 72 aa1.65□□□□□ -2.15
CHD9-201ENST00000219084 DNAH5Q8TE73 4624 aa1.64□□□□□ -2.15
CHD9-201ENST00000219084 PKD1P98161 4303 aa1.62□□□□□ -2.15
CHD9-201ENST00000219084 MT1FP04733 61 aa1.62□□□□□ -2.15
CHD9-201ENST00000219084 TNXBP22105 4242 aa1.61□□□□□ -2.15
CHD9-201ENST00000219084 SACSQ9NZJ4 4579 aa1.58□□□□□ -2.16
CHD9-201ENST00000219084 LRP1BQ9NZR2 4599 aa1.58□□□□□ -2.16
CHD9-201ENST00000219084 HSPG2P98160 4391 aa1.58□□□□□ -2.16
CHD9-201ENST00000219084 KRTAP19-1Q8IUB9 90 aa1.58□□□□□ -2.16
CHD9-201ENST00000219084 LRP1Q07954 4544 aaKnown RBP1.57□□□□□ -2.16
CHD9-201ENST00000219084 MT1XP80297 61 aa1.57□□□□□ -2.16
CHD9-201ENST00000219084 APOBP04114 4563 aaKnown RBP1.56□□□□□ -2.16
CHD9-201ENST00000219084 SPRR2FQ96RM1 72 aa1.56□□□□□ -2.16
CHD9-201ENST00000219084 LCE2CQ5TA81 110 aa1.55□□□□□ -2.16
CHD9-201ENST00000219084 SPRR2EP22531 72 aa1.53□□□□□ -2.16
CHD9-201ENST00000219084 SPRR2BP35325 72 aa1.53□□□□□ -2.16
CHD9-201ENST00000219084 SPRR2AP35326 72 aa1.53□□□□□ -2.16
CHD9-201ENST00000219084 FAT1Q14517 4588 aa1.53□□□□□ -2.16
CHD9-201ENST00000219084 MT1GP13640 62 aa1.52□□□□□ -2.17
CHD9-201ENST00000219084 KRTAP2-2Q9BYT5 123 aa1.52□□□□□ -2.17
CHD9-201ENST00000219084 SPRR2DP22532 72 aa1.51□□□□□ -2.17
CHD9-201ENST00000219084 MYCBP2O75592 4640 aa1.51□□□□□ -2.17
CHD9-201ENST00000219084 KRTAP9-8Q9BYQ0 159 aa1.5□□□□□ -2.17
CHD9-201ENST00000219084 MT1BP07438 61 aa1.5□□□□□ -2.17
CHD9-201ENST00000219084 KRTAP12-4P60329 112 aa1.5□□□□□ -2.17
CHD9-201ENST00000219084 MT1LQ93083 61 aa1.5□□□□□ -2.17
CHD9-201ENST00000219084 LCE2BO14633 110 aa1.49□□□□□ -2.17
CHD9-201ENST00000219084 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
CHD9-201ENST00000219084 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
CHD9-201ENST00000219084 KRTAP2-1Q9BYU5 128 aa1.49□□□□□ -2.17
CHD9-201ENST00000219084 KRTAP9-3Q9BYQ3 159 aa1.48□□□□□ -2.17
CHD9-201ENST00000219084 KRTAP9-6A0A140TA67 174 aa1.47□□□□□ -2.17
CHD9-201ENST00000219084 MT1EP04732 61 aa1.47□□□□□ -2.17
CHD9-201ENST00000219084 LCE3DQ9BYE3 92 aa1.47□□□□□ -2.17
CHD9-201ENST00000219084 FAT3Q8TDW7 4589 aa1.46□□□□□ -2.18
CHD9-201ENST00000219084 DNHD1Q96M86 4753 aa1.46□□□□□ -2.18
CHD9-201ENST00000219084 LCE3EQ5T5B0 92 aa1.46□□□□□ -2.18
CHD9-201ENST00000219084 LCE3BQ5TA77 95 aa1.46□□□□□ -2.18
CHD9-201ENST00000219084 KRTAP9-2Q9BYQ4 174 aa1.46□□□□□ -2.18
CHD9-201ENST00000219084 KRTAP5-2Q701N4 177 aa1.45□□□□□ -2.18
CHD9-201ENST00000219084 HYDINQ4G0P3 5121 aa1.44□□□□□ -2.18
CHD9-201ENST00000219084 KRTAP19-3Q7Z4W3 81 aa1.44□□□□□ -2.18
CHD9-201ENST00000219084 MUC17Q685J3 4493 aa1.44□□□□□ -2.18
CHD9-201ENST00000219084 BIRC6Q9NR09 4857 aa1.41□□□□□ -2.18
CHD9-201ENST00000219084 KRTAP19-2Q3LHN2 52 aa1.41□□□□□ -2.18
CHD9-201ENST00000219084 KMT2CQ8NEZ4 4911 aaKnown RBP1.41□□□□□ -2.18
CHD9-201ENST00000219084 KRTAP20-1Q3LI63 56 aa1.41□□□□□ -2.18
CHD9-201ENST00000219084 LCE2DQ5TA82 110 aaPredicted RBP1.39□□□□□ -2.19
CHD9-201ENST00000219084 KIAA1109Q2LD37 5005 aa1.39□□□□□ -2.19
CHD9-201ENST00000219084 RYR2Q92736 4967 aa1.38□□□□□ -2.19
CHD9-201ENST00000219084 MT1MQ8N339 61 aa1.38□□□□□ -2.19
CHD9-201ENST00000219084 RYR3Q15413 4870 aa1.38□□□□□ -2.19
CHD9-201ENST00000219084 KRTAP19-6Q3LI70 58 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms