RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 LCE2CQ5TA81 110 aa10.3□□□□□ -0.76
CLN3-260ENST00000637578 DEFB116Q30KQ4 102 aa10.28□□□□□ -0.76
CLN3-260ENST00000637578 SIGMAR1Q99720 223 aa10.27□□□□□ -0.76
CLN3-260ENST00000637578 IGKV4-1P06312 121 aa10.26□□□□□ -0.77
CLN3-260ENST00000637578 ETDBQ3ZM63 59 aa10.26□□□□□ -0.77
CLN3-260ENST00000637578 KRTAP9-2Q9BYQ4 174 aa10.26□□□□□ -0.77
CLN3-260ENST00000637578 NREPQ16612 68 aa10.19□□□□□ -0.78
CLN3-260ENST00000637578 J3KT08 172 aa10.17□□□□□ -0.78
CLN3-260ENST00000637578 Q75L30 129 aa10.17□□□□□ -0.78
CLN3-260ENST00000637578 DSCR10P59022 87 aa10.14□□□□□ -0.79
CLN3-260ENST00000637578 MT1HP80294 61 aa10.14□□□□□ -0.79
CLN3-260ENST00000637578 IGHV6-1A0A0B4J1U7 121 aa10.12□□□□□ -0.79
CLN3-260ENST00000637578 A0A1B0GVX0 72 aa10.11□□□□□ -0.79
CLN3-260ENST00000637578 Q6ZVQ6 151 aa10.11□□□□□ -0.79
CLN3-260ENST00000637578 NOTCH2NLQ7Z3S9 236 aa10.11□□□□□ -0.79
CLN3-260ENST00000637578 LINC00846Q9NV44 126 aa10.11□□□□□ -0.79
CLN3-260ENST00000637578 LINC00313P59037 77 aa10.09□□□□□ -0.79
CLN3-260ENST00000637578 A8MWP4 228 aa10.09□□□□□ -0.79
CLN3-260ENST00000637578 ATP11AUNQ6ZP68 121 aa10.09□□□□□ -0.79
CLN3-260ENST00000637578 C20orf166-AS1Q96NR2 134 aa10.08□□□□□ -0.8
CLN3-260ENST00000637578 NDUFB1O75438 58 aa10.07□□□□□ -0.8
CLN3-260ENST00000637578 IGKV3D-7A0A0C4DH55 119 aa10.06□□□□□ -0.8
CLN3-260ENST00000637578 UBL5Q9BZL1 73 aa10.06□□□□□ -0.8
CLN3-260ENST00000637578 BPY2O14599 106 aa10.05□□□□□ -0.8
CLN3-260ENST00000637578 A8MUU9 505 aa10.05□□□□□ -0.8
CLN3-260ENST00000637578 C8orf87E5RJ46 101 aa10.05□□□□□ -0.8
CLN3-260ENST00000637578 KRTAP16-1A8MUX0 517 aa10.04□□□□□ -0.8
CLN3-260ENST00000637578 PRR15Q8IV56 129 aa10.02□□□□□ -0.81
CLN3-260ENST00000637578 LCE2DQ5TA82 110 aaPredicted RBP10.01□□□□□ -0.81
CLN3-260ENST00000637578 K7EQZ3 153 aa10□□□□□ -0.81
CLN3-260ENST00000637578 C8orf17Q9NRJ1 99 aa10□□□□□ -0.81
CLN3-260ENST00000637578 FLGP20930 4061 aaPredicted RBP9.98□□□□□ -0.81
CLN3-260ENST00000637578 FAM240AA0A1B0GVK7 77 aa9.97□□□□□ -0.81
CLN3-260ENST00000637578 COX6B2Q6YFQ2 88 aa9.97□□□□□ -0.81
CLN3-260ENST00000637578 ACYP1P07311 99 aa9.97□□□□□ -0.81
CLN3-260ENST00000637578 Q8N9L7 120 aa9.96□□□□□ -0.82
CLN3-260ENST00000637578 LORP23490 312 aaPredicted RBP9.95□□□□□ -0.82
CLN3-260ENST00000637578 MMP24-AS1A0A0U1RRL7 71 aa9.93□□□□□ -0.82
CLN3-260ENST00000637578 KRTAP10-6P60371 365 aaPredicted RBP9.93□□□□□ -0.82
CLN3-260ENST00000637578 KRTAP9-6A0A140TA67 174 aa9.89□□□□□ -0.83
CLN3-260ENST00000637578 M0R2T5 61 aa9.88□□□□□ -0.83
CLN3-260ENST00000637578 CXCL6P80162 114 aa9.88□□□□□ -0.83
CLN3-260ENST00000637578 Q8N9P0 234 aaPredicted RBP9.87□□□□□ -0.83
CLN3-260ENST00000637578 hDV103S1A0JD37 113 aa9.86□□□□□ -0.83
CLN3-260ENST00000637578 TMEM254Q8TBM7 123 aa9.86□□□□□ -0.83
CLN3-260ENST00000637578 MRPL34Q9BQ48 92 aaKnown RBP9.84□□□□□ -0.83
CLN3-260ENST00000637578 WFDC13Q8IUB5 93 aa9.83□□□□□ -0.84
CLN3-260ENST00000637578 J3QR89 54 aa9.82□□□□□ -0.84
CLN3-260ENST00000637578 CASC2Q6XLA1 102 aa9.8□□□□□ -0.84
CLN3-260ENST00000637578 ATP5EP2Q5VTU8 51 aa9.8□□□□□ -0.84
CLN3-260ENST00000637578 HCG22E2RYF7 251 aa9.78□□□□□ -0.84
CLN3-260ENST00000637578 ZCCHC13Q8WW36 166 aaKnown RBP9.78□□□□□ -0.84
CLN3-260ENST00000637578 LINC00643Q86TS7 51 aa9.76□□□□□ -0.85
CLN3-260ENST00000637578 NDUFS5O43920 106 aa9.75□□□□□ -0.85
CLN3-260ENST00000637578 FSIP2Q5CZC0 6907 aa9.74□□□□□ -0.85
CLN3-260ENST00000637578 MPLKIPQ8TAP9 179 aa9.72□□□□□ -0.85
CLN3-260ENST00000637578 CRCT1Q9UGL9 99 aa9.71□□□□□ -0.86
CLN3-260ENST00000637578 HRES1P13985 223 aa9.7□□□□□ -0.86
CLN3-260ENST00000637578 HIST1H4AP62805 103 aaKnown RBP9.68□□□□□ -0.86
CLN3-260ENST00000637578 K7ERU9 68 aa9.67□□□□□ -0.86
CLN3-260ENST00000637578 Q5W150 140 aa9.63□□□□□ -0.87
CLN3-260ENST00000637578 KRTAP9-8Q9BYQ0 159 aa9.63□□□□□ -0.87
CLN3-260ENST00000637578 RBM12B-AS1Q9P1G2 102 aa9.63□□□□□ -0.87
CLN3-260ENST00000637578 A0A087WVE0 104 aa9.62□□□□□ -0.87
CLN3-260ENST00000637578 SPINK7P58062 85 aa9.61□□□□□ -0.87
CLN3-260ENST00000637578 FAM236DA0A1B0GTK5 79 aa9.59□□□□□ -0.87
CLN3-260ENST00000637578 FAM236CP0DP71 79 aa9.59□□□□□ -0.87
CLN3-260ENST00000637578 TP53AIP1Q9HCN2 124 aa9.55□□□□□ -0.88
CLN3-260ENST00000637578 IGKV2D-30A0A075B6S6 120 aa9.5□□□□□ -0.89
CLN3-260ENST00000637578 IGKV2-30P06310 120 aa9.5□□□□□ -0.89
CLN3-260ENST00000637578 MT-ATP8P03928 68 aa9.5□□□□□ -0.89
CLN3-260ENST00000637578 C7orf65Q6ZTY9 151 aa9.48□□□□□ -0.89
CLN3-260ENST00000637578 MT2AP02795 61 aa9.46□□□□□ -0.9
CLN3-260ENST00000637578 IMUPQ9GZP8 106 aa9.43□□□□□ -0.9
CLN3-260ENST00000637578 TRAV22A0A0B4J277 110 aa9.41□□□□□ -0.9
CLN3-260ENST00000637578 UQCRQO14949 82 aa9.41□□□□□ -0.9
CLN3-260ENST00000637578 MT1FP04733 61 aa9.38□□□□□ -0.91
CLN3-260ENST00000637578 OCR1Q9BZK8 76 aa9.38□□□□□ -0.91
CLN3-260ENST00000637578 USH2AO75445 5202 aa9.36□□□□□ -0.91
CLN3-260ENST00000637578 H0Y9P7 68 aa9.34□□□□□ -0.91
CLN3-260ENST00000637578 SCGB1A1P11684 91 aa9.34□□□□□ -0.91
CLN3-260ENST00000637578 KRTAP9-3Q9BYQ3 159 aa9.32□□□□□ -0.92
CLN3-260ENST00000637578 LOC101927531A0A1B0GV80 90 aa9.31□□□□□ -0.92
CLN3-260ENST00000637578 KRTAP10-10P60014 251 aa9.31□□□□□ -0.92
CLN3-260ENST00000637578 ATOX1O00244 68 aa9.3□□□□□ -0.92
CLN3-260ENST00000637578 C4orf26Q17RF5 130 aa9.3□□□□□ -0.92
CLN3-260ENST00000637578 CYP4F30PQ9H0H9 118 aa9.3□□□□□ -0.92
CLN3-260ENST00000637578 FAM236AA0A1B0GUQ0 79 aa9.29□□□□□ -0.92
CLN3-260ENST00000637578 FAM236BA0A1B0GV22 79 aa9.29□□□□□ -0.92
CLN3-260ENST00000637578 LCE2BO14633 110 aa9.26□□□□□ -0.93
CLN3-260ENST00000637578 SSPOA2VEC9 5147 aa9.25□□□□□ -0.93
CLN3-260ENST00000637578 MP68P56378 58 aa9.24□□□□□ -0.93
CLN3-260ENST00000637578 C1orf64Q8NEQ6 169 aa9.24□□□□□ -0.93
CLN3-260ENST00000637578 LINC00208Q96KT6 92 aa9.24□□□□□ -0.93
CLN3-260ENST00000637578 H1FX-AS1Q4G0G2 97 aa9.23□□□□□ -0.93
CLN3-260ENST00000637578 C5orf47Q569G3 176 aa9.23□□□□□ -0.93
CLN3-260ENST00000637578 SMIM20Q8N5G0 67 aa9.17□□□□□ -0.94
CLN3-260ENST00000637578 KRTAP3-1Q9BYR8 98 aa9.17□□□□□ -0.94
CLN3-260ENST00000637578 TRAV7A0A075B6U4 112 aa9.15□□□□□ -0.95
CLN3-260ENST00000637578 H3BPC8 53 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 362 ms