RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 Q75L30 129 aa8.96□□□□□ -0.97
CLN3-253ENST00000636977 MEGF8Q7Z7M0 2845 aa8.96□□□□□ -0.97
CLN3-253ENST00000636977 RTL8CO15255 209 aa8.96□□□□□ -0.98
CLN3-253ENST00000636977 CDC42SE1Q9NRR8 79 aa8.95□□□□□ -0.98
CLN3-253ENST00000636977 COA5Q86WW8 74 aa8.94□□□□□ -0.98
CLN3-253ENST00000636977 WWC2-AS2Q96NR7 200 aa8.93□□□□□ -0.98
CLN3-253ENST00000636977 LOC101927531A0A1B0GV80 90 aa8.92□□□□□ -0.98
CLN3-253ENST00000636977 LINC00483Q53H64 154 aa8.92□□□□□ -0.98
CLN3-253ENST00000636977 DNAH17Q9UFH2 4485 aa8.92□□□□□ -0.98
CLN3-253ENST00000636977 IGLV5-52A0A0A0MRZ9 124 aa8.91□□□□□ -0.98
CLN3-253ENST00000636977 SPINK7P58062 85 aa8.91□□□□□ -0.98
CLN3-253ENST00000636977 PCOTHQ58A44 107 aa8.9□□□□□ -0.98
CLN3-253ENST00000636977 ADM2Q7Z4H4 148 aa8.9□□□□□ -0.98
CLN3-253ENST00000636977 LINC00313P59037 77 aa8.89□□□□□ -0.99
CLN3-253ENST00000636977 A0A087X002 238 aa8.88□□□□□ -0.99
CLN3-253ENST00000636977 IGHV6-1A0A0B4J1U7 121 aa8.88□□□□□ -0.99
CLN3-253ENST00000636977 NOTCH2NLQ7Z3S9 236 aa8.88□□□□□ -0.99
CLN3-253ENST00000636977 Q6ZR54 194 aa8.88□□□□□ -0.99
CLN3-253ENST00000636977 C8orf17Q9NRJ1 99 aa8.86□□□□□ -0.99
CLN3-253ENST00000636977 PLAC8Q9NZF1 115 aa8.86□□□□□ -0.99
CLN3-253ENST00000636977 ZNF861PO60384 105 aa8.86□□□□□ -0.99
CLN3-253ENST00000636977 ASB16-AS1Q495Z4 193 aa8.85□□□□□ -0.99
CLN3-253ENST00000636977 DNAH6Q9C0G6 4158 aa8.85□□□□□ -0.99
CLN3-253ENST00000636977 H3BPC8 53 aa8.84□□□□□ -0.99
CLN3-253ENST00000636977 SPANXA2-OT1Q8N9U9 137 aa8.84□□□□□ -0.99
CLN3-253ENST00000636977 ZNF706Q9Y5V0 76 aaPredicted RBP8.83□□□□□ -1
CLN3-253ENST00000636977 A0A1B0GVX0 72 aa8.82□□□□□ -1
CLN3-253ENST00000636977 DNHD1Q96M86 4753 aa8.81□□□□□ -1
CLN3-253ENST00000636977 SPINK6Q6UWN8 80 aa8.8□□□□□ -1
CLN3-253ENST00000636977 ALMS1Q8TCU4 4167 aa8.8□□□□□ -1
CLN3-253ENST00000636977 C1orf134Q5TEV5 83 aa8.79□□□□□ -1
CLN3-253ENST00000636977 LINC01554Q52M75 96 aa8.78□□□□□ -1
CLN3-253ENST00000636977 CDK2AP2O75956 126 aa8.77□□□□□ -1.01
CLN3-253ENST00000636977 LY6G6CO95867 125 aa8.77□□□□□ -1.01
CLN3-253ENST00000636977 IGLV7-43P04211 117 aa8.77□□□□□ -1.01
CLN3-253ENST00000636977 CIRBP-AS1Q8TBR5 109 aa8.77□□□□□ -1.01
CLN3-253ENST00000636977 DNAH11Q96DT5 4516 aa8.76□□□□□ -1.01
CLN3-253ENST00000636977 MRPL34Q9BQ48 92 aaKnown RBP8.75□□□□□ -1.01
CLN3-253ENST00000636977 IGLV7-46A0A075B6I9 117 aa8.75□□□□□ -1.01
CLN3-253ENST00000636977 TP53AIP1Q9HCN2 124 aa8.75□□□□□ -1.01
CLN3-253ENST00000636977 KRTAP10-2P60368 255 aa8.74□□□□□ -1.01
CLN3-253ENST00000636977 LINC01558Q9Y6Z2 57 aa8.74□□□□□ -1.01
CLN3-253ENST00000636977 DNAH5Q8TE73 4624 aa8.73□□□□□ -1.01
CLN3-253ENST00000636977 Q5W150 140 aa8.71□□□□□ -1.01
CLN3-253ENST00000636977 PRR26Q8N8Z3 221 aa8.71□□□□□ -1.02
CLN3-253ENST00000636977 LRP1BQ9NZR2 4599 aa8.67□□□□□ -1.02
CLN3-253ENST00000636977 HYDINQ4G0P3 5121 aa8.65□□□□□ -1.02
CLN3-253ENST00000636977 HRES1P13985 223 aa8.64□□□□□ -1.03
CLN3-253ENST00000636977 KRTAP13-3Q3SY46 172 aa8.62□□□□□ -1.03
CLN3-253ENST00000636977 KRTAP13-2Q52LG2 175 aa8.62□□□□□ -1.03
CLN3-253ENST00000636977 PKD1P98161 4303 aa8.61□□□□□ -1.03
CLN3-253ENST00000636977 KRTAP10-1P60331 282 aa8.61□□□□□ -1.03
CLN3-253ENST00000636977 RETNLBQ9BQ08 111 aa8.61□□□□□ -1.03
CLN3-253ENST00000636977 SSBP3-AS1Q7Z2R9 100 aa8.59□□□□□ -1.03
CLN3-253ENST00000636977 FAT2Q9NYQ8 4349 aa8.57□□□□□ -1.04
CLN3-253ENST00000636977 CSAG1Q6PB30 78 aa8.57□□□□□ -1.04
CLN3-253ENST00000636977 PLA2G1BP04054 148 aaKnown RBP8.56□□□□□ -1.04
CLN3-253ENST00000636977 VPS13BQ7Z7G8 4022 aa8.54□□□□□ -1.04
CLN3-253ENST00000636977 Q6ZSA8 131 aa8.52□□□□□ -1.04
CLN3-253ENST00000636977 KRTAP1-4P0C5Y4 121 aa8.5□□□□□ -1.05
CLN3-253ENST00000636977 KRTAP16-1A8MUX0 517 aa8.45□□□□□ -1.06
CLN3-253ENST00000636977 A0A1B0GU69 56 aa8.44□□□□□ -1.06
CLN3-253ENST00000636977 PKHD1P08F94 4074 aa8.43□□□□□ -1.06
CLN3-253ENST00000636977 FAM229AH3BQW9 127 aa8.42□□□□□ -1.06
CLN3-253ENST00000636977 IGKV2-30P06310 120 aa8.4□□□□□ -1.06
CLN3-253ENST00000636977 ACYP2P14621 99 aa8.4□□□□□ -1.07
CLN3-253ENST00000636977 MIR22HGQ0VDD5 57 aa8.4□□□□□ -1.07
CLN3-253ENST00000636977 DMAC1Q96GE9 116 aa8.38□□□□□ -1.07
CLN3-253ENST00000636977 IGKV2D-30A0A075B6S6 120 aa8.37□□□□□ -1.07
CLN3-253ENST00000636977 TYMSOSQ8TAI1 123 aa8.36□□□□□ -1.07
CLN3-253ENST00000636977 FLG2Q5D862 2391 aaPredicted RBP8.33□□□□□ -1.08
CLN3-253ENST00000636977 SPATA8Q6RVD6 105 aa8.33□□□□□ -1.08
CLN3-253ENST00000636977 UQCR11O14957 56 aa8.31□□□□□ -1.08
CLN3-253ENST00000636977 SMR3BP02814 79 aaPredicted RBP8.3□□□□□ -1.08
CLN3-253ENST00000636977 SACSQ9NZJ4 4579 aa8.27□□□□□ -1.09
CLN3-253ENST00000636977 SPINK1P00995 79 aa8.26□□□□□ -1.09
CLN3-253ENST00000636977 FAT1Q14517 4588 aa8.24□□□□□ -1.09
CLN3-253ENST00000636977 DYNC1H1Q14204 4646 aaKnown RBP8.23□□□□□ -1.09
CLN3-253ENST00000636977 LINC00304Q8N9R0 145 aa8.22□□□□□ -1.09
CLN3-253ENST00000636977 Q8N1X5 172 aa8.2□□□□□ -1.1
CLN3-253ENST00000636977 ROMO1P60602 79 aa8.2□□□□□ -1.1
CLN3-253ENST00000636977 CRIPTQ9P021 101 aa8.19□□□□□ -1.1
CLN3-253ENST00000636977 C9orf92A6NGG3 77 aa8.18□□□□□ -1.1
CLN3-253ENST00000636977 KRTAP21-3Q3LHN1 58 aa8.16□□□□□ -1.1
CLN3-253ENST00000636977 APOBP04114 4563 aaKnown RBP8.12□□□□□ -1.11
CLN3-253ENST00000636977 KRTAP10-4P60372 401 aaPredicted RBP8.1□□□□□ -1.11
CLN3-253ENST00000636977 KRTAP25-1Q3LHN0 102 aa8.1□□□□□ -1.11
CLN3-253ENST00000636977 PKHD1L1Q86WI1 4243 aa8.09□□□□□ -1.12
CLN3-253ENST00000636977 RPS29P62273 56 aaKnown RBP8.07□□□□□ -1.12
CLN3-253ENST00000636977 A0A1B0GVY2 172 aa8.07□□□□□ -1.12
CLN3-253ENST00000636977 P0C880 135 aa8.03□□□□□ -1.12
CLN3-253ENST00000636977 A8MUU9 505 aa8.02□□□□□ -1.13
CLN3-253ENST00000636977 KRTAP3-1Q9BYR8 98 aa8.02□□□□□ -1.13
CLN3-253ENST00000636977 C20orf166-AS1Q96NR2 134 aa8.01□□□□□ -1.13
CLN3-253ENST00000636977 KMT2CQ8NEZ4 4911 aaKnown RBP7.98□□□□□ -1.13
CLN3-253ENST00000636977 RYR2Q92736 4967 aa7.97□□□□□ -1.13
CLN3-253ENST00000636977 LRP1Q07954 4544 aaKnown RBP7.96□□□□□ -1.14
CLN3-253ENST00000636977 A0A0A0MQY5 61 aa7.92□□□□□ -1.14
CLN3-253ENST00000636977 H0YAA0 97 aa7.91□□□□□ -1.14
CLN3-253ENST00000636977 DMBT1Q9UGM3 2413 aaPredicted RBP7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 159.1 ms