RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 PMCHL1Q16048 86 aa-2.89□□□□□ -2.87
SCN1A-211ENST00000635893 C8orf59Q8N0T1 100 aaPredicted RBP-2.89□□□□□ -2.87
SCN1A-211ENST00000635893 ACBD7Q8N6N7 88 aa-2.89□□□□□ -2.87
SCN1A-211ENST00000635893 PDCD10Q9BUL8 212 aa-2.89□□□□□ -2.87
SCN1A-211ENST00000635893 ALKAL2Q6UX46 152 aa-2.9□□□□□ -2.87
SCN1A-211ENST00000635893 CACFD1Q9UGQ2 172 aa-2.9□□□□□ -2.87
SCN1A-211ENST00000635893 UACAQ9BZF9 1416 aa-2.91□□□□□ -2.87
SCN1A-211ENST00000635893 M0R2Z0 102 aa-2.91□□□□□ -2.88
SCN1A-211ENST00000635893 ANKRD26Q9UPS8 1709 aa-2.92□□□□□ -2.88
SCN1A-211ENST00000635893 CRIP1P50238 77 aa-2.92□□□□□ -2.88
SCN1A-211ENST00000635893 COPS9Q8WXC6 57 aa-2.92□□□□□ -2.88
SCN1A-211ENST00000635893 SPANXA1Q9NS26 97 aa-2.92□□□□□ -2.88
SCN1A-211ENST00000635893 FOCADQ5VW36 1801 aa-2.92□□□□□ -2.88
SCN1A-211ENST00000635893 CATR1Q13166 79 aa-2.93□□□□□ -2.88
SCN1A-211ENST00000635893 SMCO1Q147U7 214 aa-2.93□□□□□ -2.88
SCN1A-211ENST00000635893 HMGN3Q15651 99 aa-2.93□□□□□ -2.88
SCN1A-211ENST00000635893 FHAD1B1AJZ9 1412 aa-2.93□□□□□ -2.88
SCN1A-211ENST00000635893 ARFGEF2Q9Y6D5 1785 aa-2.94□□□□□ -2.88
SCN1A-211ENST00000635893 MYOM2P54296 1465 aa-2.94□□□□□ -2.88
SCN1A-211ENST00000635893 RAPGEF2Q9Y4G8 1499 aa-2.94□□□□□ -2.88
SCN1A-211ENST00000635893 MRPL33O75394 65 aaKnown RBP-2.94□□□□□ -2.88
SCN1A-211ENST00000635893 S100A8P05109 93 aa-2.94□□□□□ -2.88
SCN1A-211ENST00000635893 MYO5CQ9NQX4 1742 aa-2.94□□□□□ -2.88
SCN1A-211ENST00000635893 INO80Q9ULG1 1556 aaPredicted RBP-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 NRXN1Q9ULB1 1477 aa-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 NDUFA4O00483 81 aa-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 UQCRHP07919 91 aa-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 POLR2KP53803 58 aaKnown RBP-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 ETDBQ3ZM63 59 aa-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 DPH3P1Q9H4G8 78 aa-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 CCDC167Q9P0B6 97 aa-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 RNF17Q9BXT8 1623 aaKnown RBP-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 NHSQ6T4R5 1651 aa-2.95□□□□□ -2.88
SCN1A-211ENST00000635893 ATP5EP56381 51 aaPredicted RBP-2.96□□□□□ -2.88
SCN1A-211ENST00000635893 RPL13AP3Q6NVV1 102 aa-2.96□□□□□ -2.88
SCN1A-211ENST00000635893 KAAG1Q9UBP8 84 aa-2.96□□□□□ -2.88
SCN1A-211ENST00000635893 ROCK2O75116 1388 aaKnown RBP-2.97□□□□□ -2.88
SCN1A-211ENST00000635893 OOSP1A8MZH6 123 aa-2.97□□□□□ -2.88
SCN1A-211ENST00000635893 CYB5AP00167 134 aa-2.97□□□□□ -2.88
SCN1A-211ENST00000635893 CKS1BP61024 79 aa-2.97□□□□□ -2.88
SCN1A-211ENST00000635893 H3BQ15 152 aa-2.98□□□□□ -2.89
SCN1A-211ENST00000635893 APOC2P02655 101 aa-2.98□□□□□ -2.89
SCN1A-211ENST00000635893 IFI27P40305 119 aaPredicted RBP-2.98□□□□□ -2.89
SCN1A-211ENST00000635893 PLGLAQ15195 96 aa-2.98□□□□□ -2.89
SCN1A-211ENST00000635893 FAM107BQ9H098 131 aa-2.98□□□□□ -2.89
SCN1A-211ENST00000635893 UTRNP46939 3433 aa-2.99□□□□□ -2.89
SCN1A-211ENST00000635893 GNG14A0A1W2PPG7 69 aa-2.99□□□□□ -2.89
SCN1A-211ENST00000635893 MPC2O95563 127 aa-2.99□□□□□ -2.89
SCN1A-211ENST00000635893 HMGA1P17096 107 aaKnown RBP-2.99□□□□□ -2.89
SCN1A-211ENST00000635893 COPZ1P61923 177 aa-2.99□□□□□ -2.89
SCN1A-211ENST00000635893 ZNF720Q7Z2F6 126 aa-2.99□□□□□ -2.89
SCN1A-211ENST00000635893 CCDC88BA6NC98 1476 aa-3□□□□□ -2.89
SCN1A-211ENST00000635893 NDUFB1O75438 58 aa-3□□□□□ -2.89
SCN1A-211ENST00000635893 KRTDAPP60985 99 aa-3□□□□□ -2.89
SCN1A-211ENST00000635893 TSTD1Q8NFU3 115 aa-3□□□□□ -2.89
SCN1A-211ENST00000635893 ABRACLQ9P1F3 81 aa-3□□□□□ -2.89
SCN1A-211ENST00000635893 hADV29S1A0JD25 119 aa-3.01□□□□□ -2.89
SCN1A-211ENST00000635893 RPS25P62851 125 aaKnown RBP-3.01□□□□□ -2.89
SCN1A-211ENST00000635893 ARHGAP35Q9NRY4 1499 aa-3.02□□□□□ -2.89
SCN1A-211ENST00000635893 ARHGAP5Q13017 1502 aa-3.02□□□□□ -2.89
SCN1A-211ENST00000635893 FAM24AA6NFZ4 105 aa-3.02□□□□□ -2.89
SCN1A-211ENST00000635893 LINC00032P0C843 101 aa-3.02□□□□□ -2.89
SCN1A-211ENST00000635893 DR1Q01658 176 aa-3.02□□□□□ -2.89
SCN1A-211ENST00000635893 CCDC180Q9P1Z9 1646 aa-3.03□□□□□ -2.89
SCN1A-211ENST00000635893 LMO7Q8WWI1 1683 aa-3.03□□□□□ -2.89
SCN1A-211ENST00000635893 MEIG1Q5JSS6 88 aa-3.03□□□□□ -2.89
SCN1A-211ENST00000635893 KCNQ1DNQ9H478 68 aa-3.03□□□□□ -2.89
SCN1A-211ENST00000635893 PAIP2BQ9ULR5 123 aaKnown RBP-3.03□□□□□ -2.89
SCN1A-211ENST00000635893 UNC13AQ9UPW8 1703 aa-3.03□□□□□ -2.89
SCN1A-211ENST00000635893 HFM1A2PYH4 1435 aa-3.03□□□□□ -2.89
SCN1A-211ENST00000635893 C3P01024 1663 aa-3.04□□□□□ -2.9
SCN1A-211ENST00000635893 UMAD1C9J7I0 102 aa-3.04□□□□□ -2.9
SCN1A-211ENST00000635893 UBL5Q9BZL1 73 aa-3.04□□□□□ -2.9
SCN1A-211ENST00000635893 NAIPQ13075 1403 aa-3.04□□□□□ -2.9
SCN1A-211ENST00000635893 ATOX1O00244 68 aa-3.05□□□□□ -2.9
SCN1A-211ENST00000635893 PFDN5Q99471 154 aa-3.05□□□□□ -2.9
SCN1A-211ENST00000635893 KTN1Q86UP2 1357 aaKnown RBP-3.05□□□□□ -2.9
SCN1A-211ENST00000635893 RRBP1Q9P2E9 1410 aaKnown RBP-3.05□□□□□ -2.9
SCN1A-211ENST00000635893 EPRSP07814 1512 aaKnown RBP-3.05□□□□□ -2.9
SCN1A-211ENST00000635893 CLTCQ00610 1675 aaKnown RBP-3.05□□□□□ -2.9
SCN1A-211ENST00000635893 DEFB133Q30KQ1 61 aa-3.06□□□□□ -2.9
SCN1A-211ENST00000635893 TTC37Q6PGP7 1564 aa-3.06□□□□□ -2.9
SCN1A-211ENST00000635893 DPY30Q9C005 99 aa-3.06□□□□□ -2.9
SCN1A-211ENST00000635893 FANCAO15360 1455 aa-3.07□□□□□ -2.9
SCN1A-211ENST00000635893 LZICQ8WZA0 190 aa-3.07□□□□□ -2.9
SCN1A-211ENST00000635893 CFAP43Q8NDM7 1665 aa-3.08□□□□□ -2.9
SCN1A-211ENST00000635893 EIF2AK4Q9P2K8 1649 aaKnown RBP-3.08□□□□□ -2.9
SCN1A-211ENST00000635893 HMGN2P05204 90 aaKnown RBP-3.09□□□□□ -2.9
SCN1A-211ENST00000635893 SCRIBQ14160 1630 aa-3.09□□□□□ -2.9
SCN1A-211ENST00000635893 DIP2AQ14689 1571 aa-3.09□□□□□ -2.9
SCN1A-211ENST00000635893 URB2Q14146 1524 aaKnown RBP-3.09□□□□□ -2.9
SCN1A-211ENST00000635893 MROH1Q8NDA8 1641 aa-3.1□□□□□ -2.91
SCN1A-211ENST00000635893 ETDCA0A1B0GVM5 59 aa-3.1□□□□□ -2.91
SCN1A-211ENST00000635893 CD52P31358 61 aa-3.1□□□□□ -2.91
SCN1A-211ENST00000635893 ARPC4P59998 168 aa-3.1□□□□□ -2.91
SCN1A-211ENST00000635893 NREPQ16612 68 aa-3.1□□□□□ -2.91
SCN1A-211ENST00000635893 WFDC10BQ8IUB3 73 aa-3.1□□□□□ -2.91
SCN1A-211ENST00000635893 GLI2P10070 1586 aa-3.1□□□□□ -2.91
SCN1A-211ENST00000635893 SMIM27A0A1W2PRY6 76 aa-3.11□□□□□ -2.91
SCN1A-211ENST00000635893 RBP2P50120 134 aa-3.11□□□□□ -2.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms