RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 UQCRHP07919 91 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 C3orf79P0CE67 100 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 LINC00158P58513 81 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 PPP3R1P63098 170 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 MUSTN1Q8IVN3 82 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 TSC22D3Q99576 134 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 NALCNQ8IZF0 1738 aa-1.64□□□□□ -2.67
SCN1A-208ENST00000625916 NFAT5O94916 1531 aa-1.65□□□□□ -2.67
SCN1A-208ENST00000625916 KIF21BO75037 1637 aa-1.65□□□□□ -2.67
SCN1A-208ENST00000625916 DOT1LQ8TEK3 1739 aa-1.65□□□□□ -2.67
SCN1A-208ENST00000625916 NDUFC1O43677 76 aa-1.65□□□□□ -2.67
SCN1A-208ENST00000625916 LEPROTL1O95214 131 aa-1.65□□□□□ -2.67
SCN1A-208ENST00000625916 RPL38P63173 70 aaKnown RBP-1.65□□□□□ -2.67
SCN1A-208ENST00000625916 TFF3Q07654 80 aa-1.65□□□□□ -2.67
SCN1A-208ENST00000625916 EIF2AK4Q9P2K8 1649 aaKnown RBP-1.66□□□□□ -2.67
SCN1A-208ENST00000625916 NRKQ7Z2Y5 1582 aa-1.66□□□□□ -2.68
SCN1A-208ENST00000625916 ATP7BP35670 1465 aa-1.66□□□□□ -2.68
SCN1A-208ENST00000625916 GNG4P50150 75 aa-1.66□□□□□ -2.68
SCN1A-208ENST00000625916 TDRG1Q3Y452 100 aa-1.66□□□□□ -2.68
SCN1A-208ENST00000625916 LINC01556Q5JQF7 62 aa-1.66□□□□□ -2.68
SCN1A-208ENST00000625916 ALKAL2Q6UX46 152 aa-1.66□□□□□ -2.68
SCN1A-208ENST00000625916 ABCA3Q99758 1704 aa-1.66□□□□□ -2.68
SCN1A-208ENST00000625916 THOC2Q8NI27 1593 aaKnown RBP-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 LRRC9Q6ZRR7 1453 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 GNGT2O14610 69 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 MPC2O95563 127 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 HTN1P15515 57 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 FAM107BQ9H098 131 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 TIMM8BQ9Y5J9 83 aaPredicted RBP-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 TOGARAM1Q9Y4F4 1720 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 CCDC180Q9P1Z9 1646 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 NEXMIFQ5QGS0 1516 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 ABCC2Q92887 1545 aa-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 RGPD3A6NKT7 1758 aaPredicted RBP-1.67□□□□□ -2.68
SCN1A-208ENST00000625916 S100A1P23297 94 aa-1.68□□□□□ -2.68
SCN1A-208ENST00000625916 S100PP25815 95 aa-1.68□□□□□ -2.68
SCN1A-208ENST00000625916 HMGN3Q15651 99 aa-1.68□□□□□ -2.68
SCN1A-208ENST00000625916 DEFB106AQ8N104 65 aa-1.68□□□□□ -2.68
SCN1A-208ENST00000625916 RGPD4Q7Z3J3 1758 aa-1.68□□□□□ -2.68
SCN1A-208ENST00000625916 MYH4Q9Y623 1939 aa-1.69□□□□□ -2.68
SCN1A-208ENST00000625916 CORTO00230 105 aa-1.69□□□□□ -2.68
SCN1A-208ENST00000625916 DEFB130BP0DP73 79 aa-1.69□□□□□ -2.68
SCN1A-208ENST00000625916 DEFB130AP0DP74 79 aa-1.69□□□□□ -2.68
SCN1A-208ENST00000625916 ETDBQ3ZM63 59 aa-1.69□□□□□ -2.68
SCN1A-208ENST00000625916 GAFA1Q96PS6 74 aa-1.69□□□□□ -2.68
SCN1A-208ENST00000625916 TIAM1Q13009 1591 aa-1.69□□□□□ -2.68
SCN1A-208ENST00000625916 LY75O60449 1722 aa-1.69□□□□□ -2.68
SCN1A-208ENST00000625916 DEFB131BA0A096LNP1 70 aa-1.7□□□□□ -2.68
SCN1A-208ENST00000625916 M0QY20 66 aa-1.7□□□□□ -2.68
SCN1A-208ENST00000625916 SFTA3P0C7M3 94 aa-1.7□□□□□ -2.68
SCN1A-208ENST00000625916 SUPT6HQ7KZ85 1726 aaKnown RBP-1.7□□□□□ -2.68
SCN1A-208ENST00000625916 PZPP20742 1482 aa-1.7□□□□□ -2.68
SCN1A-208ENST00000625916 RGPD1P0DJD0 1748 aa-1.71□□□□□ -2.68
SCN1A-208ENST00000625916 ANKRD36CQ5JPF3 1778 aa-1.71□□□□□ -2.68
SCN1A-208ENST00000625916 ZNF720Q7Z2F6 126 aa-1.71□□□□□ -2.68
SCN1A-208ENST00000625916 SERP2Q8N6R1 65 aa-1.71□□□□□ -2.68
SCN1A-208ENST00000625916 PLIN4Q96Q06 1357 aa-1.72□□□□□ -2.68
SCN1A-208ENST00000625916 IQCF6A8MYZ5 107 aa-1.72□□□□□ -2.68
SCN1A-208ENST00000625916 RPL13AP3Q6NVV1 102 aa-1.72□□□□□ -2.68
SCN1A-208ENST00000625916 PMCHL2Q9BQD1 86 aa-1.72□□□□□ -2.68
SCN1A-208ENST00000625916 NOP10Q9NPE3 64 aaKnown RBP-1.72□□□□□ -2.68
SCN1A-208ENST00000625916 KIF1AQ12756 1690 aa-1.72□□□□□ -2.68
SCN1A-208ENST00000625916 WIZO95785 1651 aa-1.73□□□□□ -2.69
SCN1A-208ENST00000625916 DLEU1O43261 78 aa-1.73□□□□□ -2.69
SCN1A-208ENST00000625916 GTF2H5Q6ZYL4 71 aa-1.73□□□□□ -2.69
SCN1A-208ENST00000625916 RRBP1Q9P2E9 1410 aaKnown RBP-1.74□□□□□ -2.69
SCN1A-208ENST00000625916 A0A1B0GV90 55 aa-1.74□□□□□ -2.69
SCN1A-208ENST00000625916 TMEM203Q969S6 136 aa-1.74□□□□□ -2.69
SCN1A-208ENST00000625916 ITSN1Q15811 1721 aa-1.74□□□□□ -2.69
SCN1A-208ENST00000625916 A0A1B0GUT8 65 aa-1.75□□□□□ -2.69
SCN1A-208ENST00000625916 H3BSH0 61 aa-1.75□□□□□ -2.69
SCN1A-208ENST00000625916 ATOX1O00244 68 aa-1.75□□□□□ -2.69
SCN1A-208ENST00000625916 ACYP1P07311 99 aa-1.75□□□□□ -2.69
SCN1A-208ENST00000625916 RPS27P42677 84 aaKnown RBP-1.75□□□□□ -2.69
SCN1A-208ENST00000625916 MRPS10P82664 201 aaKnown RBP-1.75□□□□□ -2.69
SCN1A-208ENST00000625916 GNG8Q9UK08 70 aa-1.75□□□□□ -2.69
SCN1A-208ENST00000625916 ANKRD36BQ8N2N9 1353 aa-1.75□□□□□ -2.69
SCN1A-208ENST00000625916 HMGN1P05114 100 aa-1.76□□□□□ -2.69
SCN1A-208ENST00000625916 IFI6P09912 130 aa-1.76□□□□□ -2.69
SCN1A-208ENST00000625916 S100A12P80511 92 aa-1.76□□□□□ -2.69
SCN1A-208ENST00000625916 RHPN1-AS1Q9BWJ2 59 aa-1.76□□□□□ -2.69
SCN1A-208ENST00000625916 DIP2AQ14689 1571 aa-1.76□□□□□ -2.69
SCN1A-208ENST00000625916 DEPDC5O75140 1603 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 NESP48681 1621 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 RICTORQ6R327 1708 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 A0A096LNI7 61 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 UQCRHLA0A096LP55 91 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 TRAV21A0A0B4J279 112 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 IAPPP10997 89 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 COL5A1-AS1Q5SY13 56 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 DEFB124Q8NES8 71 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 ABCC3O15438 1527 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 LMTK2Q8IWU2 1503 aa-1.77□□□□□ -2.69
SCN1A-208ENST00000625916 STATHP02808 62 aa-1.78□□□□□ -2.69
SCN1A-208ENST00000625916 HTN3P15516 51 aa-1.78□□□□□ -2.69
SCN1A-208ENST00000625916 FAUP35544 74 aaKnown RBP-1.78□□□□□ -2.69
SCN1A-208ENST00000625916 ALS2Q96Q42 1657 aa-1.78□□□□□ -2.69
SCN1A-208ENST00000625916 UNC13AQ9UPW8 1703 aa-1.79□□□□□ -2.7
SCN1A-208ENST00000625916 NWD1Q149M9 1564 aa-1.79□□□□□ -2.7
SCN1A-208ENST00000625916 PLGLAQ15195 96 aa-1.79□□□□□ -2.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms