RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 WWC2-AS2Q96NR7 200 aa7.11□□□□□ -1.27
TPM3-223ENST00000611659 APLNQ9ULZ1 77 aa7.11□□□□□ -1.27
TPM3-223ENST00000611659 DNAH7Q8WXX0 4024 aa7.1□□□□□ -1.27
TPM3-223ENST00000611659 LINC00483Q53H64 154 aa7.09□□□□□ -1.27
TPM3-223ENST00000611659 ZNF706Q9Y5V0 76 aaPredicted RBP7.09□□□□□ -1.27
TPM3-223ENST00000611659 SPACA4Q8TDM5 124 aa7.08□□□□□ -1.28
TPM3-223ENST00000611659 PSORS1C2Q9UIG4 136 aa7.08□□□□□ -1.28
TPM3-223ENST00000611659 NBDYA0A0U1RRE5 68 aa7.07□□□□□ -1.28
TPM3-223ENST00000611659 RETNLBQ9BQ08 111 aa7.07□□□□□ -1.28
TPM3-223ENST00000611659 ACYP2P14621 99 aa7.07□□□□□ -1.28
TPM3-223ENST00000611659 CIRBP-AS1Q8TBR5 109 aa7.05□□□□□ -1.28
TPM3-223ENST00000611659 PRAC1Q96KF2 57 aa7.05□□□□□ -1.28
TPM3-223ENST00000611659 LINC00313P59037 77 aa7.04□□□□□ -1.28
TPM3-223ENST00000611659 IGLV5-52A0A0A0MRZ9 124 aa7.03□□□□□ -1.28
TPM3-223ENST00000611659 Q6ZRN7 208 aaPredicted RBP7.02□□□□□ -1.29
TPM3-223ENST00000611659 PLECQ15149 4684 aaKnown RBP7.02□□□□□ -1.29
TPM3-223ENST00000611659 ZNF861PO60384 105 aa7.02□□□□□ -1.29
TPM3-223ENST00000611659 A0A1B0GU69 56 aa7.01□□□□□ -1.29
TPM3-223ENST00000611659 FRAS1Q86XX4 4008 aa7.01□□□□□ -1.29
TPM3-223ENST00000611659 ADM2Q7Z4H4 148 aa7.01□□□□□ -1.29
TPM3-223ENST00000611659 KRTAP13-3Q3SY46 172 aa7□□□□□ -1.29
TPM3-223ENST00000611659 RTL8CO15255 209 aa6.98□□□□□ -1.29
TPM3-223ENST00000611659 A0A087WTM6 91 aa6.97□□□□□ -1.29
TPM3-223ENST00000611659 DMAC1Q96GE9 116 aa6.96□□□□□ -1.29
TPM3-223ENST00000611659 TGP01266 2768 aa6.95□□□□□ -1.3
TPM3-223ENST00000611659 DNAH8Q96JB1 4490 aa6.92□□□□□ -1.3
TPM3-223ENST00000611659 C8orf87E5RJ46 101 aa6.92□□□□□ -1.3
TPM3-223ENST00000611659 FAM229AH3BQW9 127 aa6.92□□□□□ -1.3
TPM3-223ENST00000611659 MIR22HGQ0VDD5 57 aa6.91□□□□□ -1.3
TPM3-223ENST00000611659 NUPR2A6NF83 97 aa6.9□□□□□ -1.3
TPM3-223ENST00000611659 IGLV7-43P04211 117 aa6.9□□□□□ -1.3
TPM3-223ENST00000611659 STARD9Q9P2P6 4700 aa6.89□□□□□ -1.31
TPM3-223ENST00000611659 IGKV2D-30A0A075B6S6 120 aa6.89□□□□□ -1.31
TPM3-223ENST00000611659 IGKV2-30P06310 120 aa6.89□□□□□ -1.31
TPM3-223ENST00000611659 UQCR11O14957 56 aa6.89□□□□□ -1.31
TPM3-223ENST00000611659 PLA2G1BP04054 148 aaKnown RBP6.89□□□□□ -1.31
TPM3-223ENST00000611659 SPATA8Q6RVD6 105 aa6.89□□□□□ -1.31
TPM3-223ENST00000611659 ALMS1Q8TCU4 4167 aa6.87□□□□□ -1.31
TPM3-223ENST00000611659 KMT2AQ03164 3969 aa6.86□□□□□ -1.31
TPM3-223ENST00000611659 SSBP3-AS1Q7Z2R9 100 aa6.85□□□□□ -1.31
TPM3-223ENST00000611659 LINC01554Q52M75 96 aa6.85□□□□□ -1.31
TPM3-223ENST00000611659 SPINK1P00995 79 aa6.83□□□□□ -1.32
TPM3-223ENST00000611659 HECTD4Q9Y4D8 3996 aa6.82□□□□□ -1.32
TPM3-223ENST00000611659 FBN3Q75N90 2809 aa6.82□□□□□ -1.32
TPM3-223ENST00000611659 PRKDCP78527 4128 aaKnown RBP6.81□□□□□ -1.32
TPM3-223ENST00000611659 MEGF8Q7Z7M0 2845 aa6.81□□□□□ -1.32
TPM3-223ENST00000611659 DYNC2H1Q8NCM8 4307 aaKnown RBP6.8□□□□□ -1.32
TPM3-223ENST00000611659 DNAH17Q9UFH2 4485 aa6.8□□□□□ -1.32
TPM3-223ENST00000611659 CSAG1Q6PB30 78 aa6.79□□□□□ -1.32
TPM3-223ENST00000611659 DNAH2Q9P225 4427 aa6.78□□□□□ -1.32
TPM3-223ENST00000611659 LY6G6CO95867 125 aa6.77□□□□□ -1.33
TPM3-223ENST00000611659 KRTAP13-2Q52LG2 175 aa6.76□□□□□ -1.33
TPM3-223ENST00000611659 VPS13DQ5THJ4 4388 aa6.76□□□□□ -1.33
TPM3-223ENST00000611659 KRTAP16-1A8MUX0 517 aa6.76□□□□□ -1.33
TPM3-223ENST00000611659 C1orf134Q5TEV5 83 aa6.75□□□□□ -1.33
TPM3-223ENST00000611659 Q8N1X5 172 aa6.75□□□□□ -1.33
TPM3-223ENST00000611659 C4orf48Q5BLP8 95 aa6.73□□□□□ -1.33
TPM3-223ENST00000611659 DNAH6Q9C0G6 4158 aa6.7□□□□□ -1.34
TPM3-223ENST00000611659 DNHD1Q96M86 4753 aa6.69□□□□□ -1.34
TPM3-223ENST00000611659 KRTAP10-2P60368 255 aa6.69□□□□□ -1.34
TPM3-223ENST00000611659 DNAH11Q96DT5 4516 aa6.68□□□□□ -1.34
TPM3-223ENST00000611659 LCE2DQ5TA82 110 aaPredicted RBP6.64□□□□□ -1.35
TPM3-223ENST00000611659 H3BS24 57 aa6.63□□□□□ -1.35
TPM3-223ENST00000611659 TYMSOSQ8TAI1 123 aa6.61□□□□□ -1.35
TPM3-223ENST00000611659 KRTAP1-4P0C5Y4 121 aa6.6□□□□□ -1.35
TPM3-223ENST00000611659 Q6ZSA8 131 aa6.6□□□□□ -1.35
TPM3-223ENST00000611659 LRP1BQ9NZR2 4599 aa6.6□□□□□ -1.35
TPM3-223ENST00000611659 H0YAA0 97 aa6.59□□□□□ -1.35
TPM3-223ENST00000611659 KRTAP10-1P60331 282 aa6.58□□□□□ -1.36
TPM3-223ENST00000611659 DNAH5Q8TE73 4624 aa6.58□□□□□ -1.36
TPM3-223ENST00000611659 A8MUU9 505 aa6.55□□□□□ -1.36
TPM3-223ENST00000611659 A0A1B0GU33 70 aa6.54□□□□□ -1.36
TPM3-223ENST00000611659 LINC00304Q8N9R0 145 aa6.54□□□□□ -1.36
TPM3-223ENST00000611659 HYDINQ4G0P3 5121 aa6.53□□□□□ -1.36
TPM3-223ENST00000611659 FLG2Q5D862 2391 aaPredicted RBP6.53□□□□□ -1.36
TPM3-223ENST00000611659 C9orf92A6NGG3 77 aa6.53□□□□□ -1.36
TPM3-223ENST00000611659 KRTAP25-1Q3LHN0 102 aa6.51□□□□□ -1.37
TPM3-223ENST00000611659 CRIPTQ9P021 101 aa6.51□□□□□ -1.37
TPM3-223ENST00000611659 VPS13BQ7Z7G8 4022 aa6.48□□□□□ -1.37
TPM3-223ENST00000611659 H1FX-AS1Q4G0G2 97 aa6.47□□□□□ -1.37
TPM3-223ENST00000611659 KRTAP3-1Q9BYR8 98 aa6.45□□□□□ -1.38
TPM3-223ENST00000611659 SMR3BP02814 79 aaPredicted RBP6.45□□□□□ -1.38
TPM3-223ENST00000611659 FAT2Q9NYQ8 4349 aa6.43□□□□□ -1.38
TPM3-223ENST00000611659 K7ERS5 55 aa6.42□□□□□ -1.38
TPM3-223ENST00000611659 ROMO1P60602 79 aa6.42□□□□□ -1.38
TPM3-223ENST00000611659 PKD1P98161 4303 aa6.41□□□□□ -1.38
TPM3-223ENST00000611659 PKHD1P08F94 4074 aa6.38□□□□□ -1.39
TPM3-223ENST00000611659 COX6B2Q6YFQ2 88 aa6.37□□□□□ -1.39
TPM3-223ENST00000611659 C20orf166-AS1Q96NR2 134 aa6.37□□□□□ -1.39
TPM3-223ENST00000611659 RPS29P62273 56 aaKnown RBP6.34□□□□□ -1.4
TPM3-223ENST00000611659 FAT1Q14517 4588 aa6.33□□□□□ -1.4
TPM3-223ENST00000611659 A0A0D9SG42 100 aa6.3□□□□□ -1.4
TPM3-223ENST00000611659 KRTAP3-3Q9BYR6 98 aa6.3□□□□□ -1.4
TPM3-223ENST00000611659 KRTAP3-2Q9BYR7 98 aa6.3□□□□□ -1.4
TPM3-223ENST00000611659 DMBT1Q9UGM3 2413 aaPredicted RBP6.29□□□□□ -1.4
TPM3-223ENST00000611659 DYNC1H1Q14204 4646 aaKnown RBP6.25□□□□□ -1.41
TPM3-223ENST00000611659 RPL37P61927 97 aaKnown RBP6.24□□□□□ -1.41
TPM3-223ENST00000611659 P0C880 135 aa6.24□□□□□ -1.41
TPM3-223ENST00000611659 SPINT4Q6UDR6 99 aa6.22□□□□□ -1.41
TPM3-223ENST00000611659 SACSQ9NZJ4 4579 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms