RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 hADV29S1A0JD25 119 aa3.37□□□□□ -1.87
CUX1-220ENST00000607092 JMJD7-PLA2G4BH0Y9G9 81 aa3.37□□□□□ -1.87
CUX1-220ENST00000607092 COX7BP24311 80 aa3.37□□□□□ -1.87
CUX1-220ENST00000607092 KRTAP15-1Q3LI76 137 aa3.37□□□□□ -1.87
CUX1-220ENST00000607092 C6orf99Q4VX62 202 aa3.37□□□□□ -1.87
CUX1-220ENST00000607092 HRCT1Q6UXD1 115 aa3.37□□□□□ -1.87
CUX1-220ENST00000607092 ST20-AS1Q8NBB2 130 aa3.37□□□□□ -1.87
CUX1-220ENST00000607092 SIGMAR1Q99720 223 aa3.37□□□□□ -1.87
CUX1-220ENST00000607092 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.36□□□□□ -1.87
CUX1-220ENST00000607092 OBSCN-AS1Q96MR7 158 aa3.36□□□□□ -1.87
CUX1-220ENST00000607092 PDE6GP18545 87 aa3.35□□□□□ -1.87
CUX1-220ENST00000607092 ELOF1P60002 83 aaKnown RBP3.35□□□□□ -1.87
CUX1-220ENST00000607092 C1orf195Q5TG92 126 aa3.35□□□□□ -1.87
CUX1-220ENST00000607092 USH2AO75445 5202 aa3.35□□□□□ -1.87
CUX1-220ENST00000607092 F8WEM9 126 aa3.34□□□□□ -1.87
CUX1-220ENST00000607092 ATP11AUNQ6ZP68 121 aa3.34□□□□□ -1.87
CUX1-220ENST00000607092 SMIM29Q86T20 159 aa3.34□□□□□ -1.87
CUX1-220ENST00000607092 SSPOA2VEC9 5147 aa3.33□□□□□ -1.88
CUX1-220ENST00000607092 SCGB1A1P11684 91 aa3.33□□□□□ -1.88
CUX1-220ENST00000607092 DEFB105AQ8NG35 78 aa3.33□□□□□ -1.88
CUX1-220ENST00000607092 IGLV5-48A0A075B6I7 105 aa3.32□□□□□ -1.88
CUX1-220ENST00000607092 RBM3P98179 157 aaKnown RBP3.32□□□□□ -1.88
CUX1-220ENST00000607092 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.31□□□□□ -1.88
CUX1-220ENST00000607092 CCKP06307 115 aa3.31□□□□□ -1.88
CUX1-220ENST00000607092 Q6JHZ5 121 aa3.31□□□□□ -1.88
CUX1-220ENST00000607092 Q6Q795 121 aa3.31□□□□□ -1.88
CUX1-220ENST00000607092 Q6ZQY7 126 aa3.31□□□□□ -1.88
CUX1-220ENST00000607092 LINC00643Q86TS7 51 aa3.31□□□□□ -1.88
CUX1-220ENST00000607092 LOC110117498A0A087WWA1 95 aa3.3□□□□□ -1.88
CUX1-220ENST00000607092 A0A1B0GW54 56 aa3.3□□□□□ -1.88
CUX1-220ENST00000607092 IMUPQ9GZP8 106 aa3.3□□□□□ -1.88
CUX1-220ENST00000607092 SYNE2Q8WXH0 6885 aaKnown RBP3.3□□□□□ -1.88
CUX1-220ENST00000607092 FCGBPQ9Y6R7 5405 aaPredicted RBP3.29□□□□□ -1.88
CUX1-220ENST00000607092 NDUFV3P56181 108 aaKnown RBP3.29□□□□□ -1.88
CUX1-220ENST00000607092 DSCR8Q96T75 97 aa3.29□□□□□ -1.88
CUX1-220ENST00000607092 KRTAP9-4Q9BYQ2 154 aa3.29□□□□□ -1.88
CUX1-220ENST00000607092 LINC00846Q9NV44 126 aa3.29□□□□□ -1.88
CUX1-220ENST00000607092 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.88
CUX1-220ENST00000607092 C14orf132Q9NPU4 83 aa3.28□□□□□ -1.88
CUX1-220ENST00000607092 SS18L2Q9UHA2 77 aa3.28□□□□□ -1.88
CUX1-220ENST00000607092 TRBV7-4A0A0J9YYF1 115 aa3.27□□□□□ -1.89
CUX1-220ENST00000607092 MT-ATP8P03928 68 aa3.27□□□□□ -1.89
CUX1-220ENST00000607092 Q6ZQT0 140 aa3.27□□□□□ -1.89
CUX1-220ENST00000607092 TRBV7-7A0A0K0K1E9 115 aa3.26□□□□□ -1.89
CUX1-220ENST00000607092 LCE3BQ5TA77 95 aa3.26□□□□□ -1.89
CUX1-220ENST00000607092 ATP5EP2Q5VTU8 51 aa3.25□□□□□ -1.89
CUX1-220ENST00000607092 UBL5Q9BZL1 73 aa3.25□□□□□ -1.89
CUX1-220ENST00000607092 MACF1Q9UPN3 7388 aaKnown RBP3.24□□□□□ -1.89
CUX1-220ENST00000607092 Q96NJ1 140 aa3.23□□□□□ -1.89
CUX1-220ENST00000607092 KRTAP9-3Q9BYQ3 159 aa3.23□□□□□ -1.89
CUX1-220ENST00000607092 FAM236DA0A1B0GTK5 79 aa3.22□□□□□ -1.89
CUX1-220ENST00000607092 FAM236CP0DP71 79 aa3.22□□□□□ -1.89
CUX1-220ENST00000607092 CXCL6P80162 114 aa3.22□□□□□ -1.89
CUX1-220ENST00000607092 IGFL1Q6UW32 110 aa3.22□□□□□ -1.89
CUX1-220ENST00000607092 C20orf166-AS1Q96NR2 134 aa3.22□□□□□ -1.89
CUX1-220ENST00000607092 KRTAP9-8Q9BYQ0 159 aa3.22□□□□□ -1.89
CUX1-220ENST00000607092 RBM12B-AS1Q9P1G2 102 aa3.22□□□□□ -1.89
CUX1-220ENST00000607092 A0A0G2JQZ4 141 aa3.21□□□□□ -1.9
CUX1-220ENST00000607092 A8MUU9 505 aa3.21□□□□□ -1.9
CUX1-220ENST00000607092 A0A1B0GV72 72 aa3.2□□□□□ -1.9
CUX1-220ENST00000607092 NREPQ16612 68 aa3.2□□□□□ -1.9
CUX1-220ENST00000607092 Q6ZVQ6 151 aa3.2□□□□□ -1.9
CUX1-220ENST00000607092 IGKV3D-7A0A0C4DH55 119 aa3.18□□□□□ -1.9
CUX1-220ENST00000607092 A0A1W2PNM2 257 aa3.18□□□□□ -1.9
CUX1-220ENST00000607092 HIST1H4AP62805 103 aaKnown RBP3.18□□□□□ -1.9
CUX1-220ENST00000607092 ANAPC13Q9BS18 74 aa3.18□□□□□ -1.9
CUX1-220ENST00000607092 ATOX1O00244 68 aa3.17□□□□□ -1.9
CUX1-220ENST00000607092 MT2AP02795 61 aa3.17□□□□□ -1.9
CUX1-220ENST00000607092 KRTAP10-10P60014 251 aa3.17□□□□□ -1.9
CUX1-220ENST00000607092 BPY2O14599 106 aa3.16□□□□□ -1.9
CUX1-220ENST00000607092 SMIM20Q8N5G0 67 aa3.16□□□□□ -1.9
CUX1-220ENST00000607092 FAM236AA0A1B0GUQ0 79 aa3.15□□□□□ -1.91
CUX1-220ENST00000607092 FAM236BA0A1B0GV22 79 aa3.15□□□□□ -1.91
CUX1-220ENST00000607092 IGKV2-30P06310 120 aa3.15□□□□□ -1.91
CUX1-220ENST00000607092 LINC00313P59037 77 aa3.15□□□□□ -1.91
CUX1-220ENST00000607092 A0A087WSZ3 146 aa3.14□□□□□ -1.91
CUX1-220ENST00000607092 J3KT08 172 aa3.13□□□□□ -1.91
CUX1-220ENST00000607092 UQCRQO14949 82 aa3.13□□□□□ -1.91
CUX1-220ENST00000607092 COX7CP15954 63 aa3.13□□□□□ -1.91
CUX1-220ENST00000607092 SERP2Q8N6R1 65 aa3.13□□□□□ -1.91
CUX1-220ENST00000607092 MT1FP04733 61 aa3.12□□□□□ -1.91
CUX1-220ENST00000607092 DSCR10P59022 87 aa3.12□□□□□ -1.91
CUX1-220ENST00000607092 NEBP20929 6669 aa3.12□□□□□ -1.91
CUX1-220ENST00000607092 TRAV7A0A075B6U4 112 aa3.11□□□□□ -1.91
CUX1-220ENST00000607092 A0A087WVE0 104 aa3.11□□□□□ -1.91
CUX1-220ENST00000607092 A8MWP4 228 aa3.11□□□□□ -1.91
CUX1-220ENST00000607092 IGKV4-1P06312 121 aa3.11□□□□□ -1.91
CUX1-220ENST00000607092 LINC00472Q9H8W2 130 aa3.11□□□□□ -1.91
CUX1-220ENST00000607092 HRES1P13985 223 aa3.1□□□□□ -1.91
CUX1-220ENST00000607092 KRTAP19-6Q3LI70 58 aa3.1□□□□□ -1.91
CUX1-220ENST00000607092 C8orf87E5RJ46 101 aa3.09□□□□□ -1.91
CUX1-220ENST00000607092 NDUFB1O75438 58 aa3.09□□□□□ -1.91
CUX1-220ENST00000607092 LCE5AQ5TCM9 118 aa3.09□□□□□ -1.91
CUX1-220ENST00000607092 KRTAP16-1A8MUX0 517 aa3.08□□□□□ -1.92
CUX1-220ENST00000607092 CCDC179H3BU77 68 aa3.08□□□□□ -1.92
CUX1-220ENST00000607092 KRTAP6-3Q3LI67 103 aa3.08□□□□□ -1.92
CUX1-220ENST00000607092 NOTCH2NLQ7Z3S9 236 aa3.08□□□□□ -1.92
CUX1-220ENST00000607092 PRR15Q8IV56 129 aa3.08□□□□□ -1.92
CUX1-220ENST00000607092 PRAC1Q96KF2 57 aa3.07□□□□□ -1.92
CUX1-220ENST00000607092 IGHV6-1A0A0B4J1U7 121 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms