RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 A0A1B0GVX0 72 aa11□□□□□ -0.65
UPF1-210ENST00000600689 TP53AIP1Q9HCN2 124 aa11□□□□□ -0.65
UPF1-210ENST00000600689 CDC42SE1Q9NRR8 79 aa11□□□□□ -0.65
UPF1-210ENST00000600689 VPS13DQ5THJ4 4388 aa10.99□□□□□ -0.65
UPF1-210ENST00000600689 MRPL34Q9BQ48 92 aaKnown RBP10.98□□□□□ -0.65
UPF1-210ENST00000600689 NUPR2A6NF83 97 aa10.98□□□□□ -0.65
UPF1-210ENST00000600689 HECTD4Q9Y4D8 3996 aa10.97□□□□□ -0.65
UPF1-210ENST00000600689 Q6ZRN7 208 aaPredicted RBP10.97□□□□□ -0.65
UPF1-210ENST00000600689 LINC01558Q9Y6Z2 57 aa10.97□□□□□ -0.65
UPF1-210ENST00000600689 A6NN06 94 aa10.97□□□□□ -0.65
UPF1-210ENST00000600689 TGP01266 2768 aa10.96□□□□□ -0.66
UPF1-210ENST00000600689 DNAH2Q9P225 4427 aa10.96□□□□□ -0.66
UPF1-210ENST00000600689 KRTAP13-1Q8IUC0 172 aa10.95□□□□□ -0.66
UPF1-210ENST00000600689 Q5W150 140 aa10.95□□□□□ -0.66
UPF1-210ENST00000600689 Q6ZR54 194 aa10.94□□□□□ -0.66
UPF1-210ENST00000600689 CIRBP-AS1Q8TBR5 109 aa10.9□□□□□ -0.66
UPF1-210ENST00000600689 PSORS1C2Q9UIG4 136 aa10.9□□□□□ -0.66
UPF1-210ENST00000600689 FRAS1Q86XX4 4008 aa10.9□□□□□ -0.66
UPF1-210ENST00000600689 ASB16-AS1Q495Z4 193 aa10.89□□□□□ -0.67
UPF1-210ENST00000600689 WWC2-AS2Q96NR7 200 aa10.89□□□□□ -0.67
UPF1-210ENST00000600689 PRAC1Q96KF2 57 aa10.87□□□□□ -0.67
UPF1-210ENST00000600689 FBN3Q75N90 2809 aa10.87□□□□□ -0.67
UPF1-210ENST00000600689 SPACA4Q8TDM5 124 aa10.84□□□□□ -0.67
UPF1-210ENST00000600689 C7orf65Q6ZTY9 151 aa10.84□□□□□ -0.67
UPF1-210ENST00000600689 PLAC8Q9NZF1 115 aa10.84□□□□□ -0.67
UPF1-210ENST00000600689 A0A087WTM6 91 aa10.81□□□□□ -0.68
UPF1-210ENST00000600689 ADM2Q7Z4H4 148 aa10.8□□□□□ -0.68
UPF1-210ENST00000600689 ZNF706Q9Y5V0 76 aaPredicted RBP10.78□□□□□ -0.68
UPF1-210ENST00000600689 LINC00483Q53H64 154 aa10.77□□□□□ -0.68
UPF1-210ENST00000600689 DNAH8Q96JB1 4490 aa10.77□□□□□ -0.69
UPF1-210ENST00000600689 IGLV5-52A0A0A0MRZ9 124 aa10.76□□□□□ -0.69
UPF1-210ENST00000600689 DNAH6Q9C0G6 4158 aa10.76□□□□□ -0.69
UPF1-210ENST00000600689 RTL8CO15255 209 aa10.75□□□□□ -0.69
UPF1-210ENST00000600689 ZNF861PO60384 105 aa10.75□□□□□ -0.69
UPF1-210ENST00000600689 DNAH17Q9UFH2 4485 aa10.75□□□□□ -0.69
UPF1-210ENST00000600689 ACYP2P14621 99 aa10.74□□□□□ -0.69
UPF1-210ENST00000600689 LINC00313P59037 77 aa10.73□□□□□ -0.69
UPF1-210ENST00000600689 A0A1B0GU69 56 aa10.69□□□□□ -0.7
UPF1-210ENST00000600689 LY6G6CO95867 125 aa10.69□□□□□ -0.7
UPF1-210ENST00000600689 HYDINQ4G0P3 5121 aa10.67□□□□□ -0.7
UPF1-210ENST00000600689 IGKV2D-30A0A075B6S6 120 aa10.64□□□□□ -0.71
UPF1-210ENST00000600689 IGKV2-30P06310 120 aa10.64□□□□□ -0.71
UPF1-210ENST00000600689 KRTAP13-3Q3SY46 172 aa10.64□□□□□ -0.71
UPF1-210ENST00000600689 C1orf134Q5TEV5 83 aa10.64□□□□□ -0.71
UPF1-210ENST00000600689 DNAH5Q8TE73 4624 aa10.62□□□□□ -0.71
UPF1-210ENST00000600689 SPINK1P00995 79 aa10.61□□□□□ -0.71
UPF1-210ENST00000600689 C4orf48Q5BLP8 95 aa10.61□□□□□ -0.71
UPF1-210ENST00000600689 DNAH11Q96DT5 4516 aa10.6□□□□□ -0.71
UPF1-210ENST00000600689 IGLV7-43P04211 117 aa10.59□□□□□ -0.71
UPF1-210ENST00000600689 ALMS1Q8TCU4 4167 aa10.58□□□□□ -0.72
UPF1-210ENST00000600689 DMAC1Q96GE9 116 aa10.58□□□□□ -0.72
UPF1-210ENST00000600689 KRTAP21-3Q3LHN1 58 aa10.56□□□□□ -0.72
UPF1-210ENST00000600689 KRTAP10-2P60368 255 aa10.54□□□□□ -0.72
UPF1-210ENST00000600689 MIR22HGQ0VDD5 57 aa10.53□□□□□ -0.72
UPF1-210ENST00000600689 FAM229AH3BQW9 127 aa10.52□□□□□ -0.72
UPF1-210ENST00000600689 PKD1P98161 4303 aa10.51□□□□□ -0.73
UPF1-210ENST00000600689 C8orf87E5RJ46 101 aa10.51□□□□□ -0.73
UPF1-210ENST00000600689 FAT2Q9NYQ8 4349 aa10.49□□□□□ -0.73
UPF1-210ENST00000600689 UQCR11O14957 56 aa10.46□□□□□ -0.73
UPF1-210ENST00000600689 LRP1BQ9NZR2 4599 aa10.45□□□□□ -0.74
UPF1-210ENST00000600689 Q8N1X5 172 aa10.44□□□□□ -0.74
UPF1-210ENST00000600689 SPATA8Q6RVD6 105 aa10.43□□□□□ -0.74
UPF1-210ENST00000600689 SSBP3-AS1Q7Z2R9 100 aa10.43□□□□□ -0.74
UPF1-210ENST00000600689 KRTAP13-2Q52LG2 175 aa10.42□□□□□ -0.74
UPF1-210ENST00000600689 PLA2G1BP04054 148 aaKnown RBP10.39□□□□□ -0.75
UPF1-210ENST00000600689 CSAG1Q6PB30 78 aa10.38□□□□□ -0.75
UPF1-210ENST00000600689 LINC01554Q52M75 96 aa10.38□□□□□ -0.75
UPF1-210ENST00000600689 KRTAP10-1P60331 282 aa10.37□□□□□ -0.75
UPF1-210ENST00000600689 VPS13BQ7Z7G8 4022 aa10.36□□□□□ -0.75
UPF1-210ENST00000600689 PKHD1P08F94 4074 aa10.35□□□□□ -0.75
UPF1-210ENST00000600689 KRTAP16-1A8MUX0 517 aa10.32□□□□□ -0.76
UPF1-210ENST00000600689 FLG2Q5D862 2391 aaPredicted RBP10.31□□□□□ -0.76
UPF1-210ENST00000600689 Q6ZSA8 131 aa10.27□□□□□ -0.76
UPF1-210ENST00000600689 SACSQ9NZJ4 4579 aa10.26□□□□□ -0.77
UPF1-210ENST00000600689 H3BS24 57 aa10.21□□□□□ -0.78
UPF1-210ENST00000600689 TYMSOSQ8TAI1 123 aa10.18□□□□□ -0.78
UPF1-210ENST00000600689 C9orf92A6NGG3 77 aa10.15□□□□□ -0.78
UPF1-210ENST00000600689 CRIPTQ9P021 101 aa10.15□□□□□ -0.79
UPF1-210ENST00000600689 KRTAP1-4P0C5Y4 121 aa10.14□□□□□ -0.79
UPF1-210ENST00000600689 H0YAA0 97 aa10.08□□□□□ -0.8
UPF1-210ENST00000600689 DYNC1H1Q14204 4646 aaKnown RBP10.08□□□□□ -0.8
UPF1-210ENST00000600689 SMR3BP02814 79 aaPredicted RBP10.04□□□□□ -0.8
UPF1-210ENST00000600689 DMBT1Q9UGM3 2413 aaPredicted RBP10.04□□□□□ -0.8
UPF1-210ENST00000600689 FAT1Q14517 4588 aa10.03□□□□□ -0.8
UPF1-210ENST00000600689 KMT2CQ8NEZ4 4911 aaKnown RBP10.02□□□□□ -0.81
UPF1-210ENST00000600689 A0A1B0GU33 70 aa9.99□□□□□ -0.81
UPF1-210ENST00000600689 LINC00304Q8N9R0 145 aa9.98□□□□□ -0.81
UPF1-210ENST00000600689 RYR2Q92736 4967 aa9.95□□□□□ -0.82
UPF1-210ENST00000600689 APOBP04114 4563 aaKnown RBP9.95□□□□□ -0.82
UPF1-210ENST00000600689 A8MUU9 505 aa9.95□□□□□ -0.82
UPF1-210ENST00000600689 KRTAP3-1Q9BYR8 98 aa9.91□□□□□ -0.82
UPF1-210ENST00000600689 A0A1B0GVY2 172 aa9.88□□□□□ -0.83
UPF1-210ENST00000600689 KRTAP25-1Q3LHN0 102 aa9.88□□□□□ -0.83
UPF1-210ENST00000600689 H1FX-AS1Q4G0G2 97 aa9.88□□□□□ -0.83
UPF1-210ENST00000600689 KRTAP10-4P60372 401 aaPredicted RBP9.79□□□□□ -0.84
UPF1-210ENST00000600689 A0A0D9SG42 100 aa9.78□□□□□ -0.84
UPF1-210ENST00000600689 PKHD1L1Q86WI1 4243 aa9.76□□□□□ -0.85
UPF1-210ENST00000600689 COX6B2Q6YFQ2 88 aa9.75□□□□□ -0.85
UPF1-210ENST00000600689 K7ERS5 55 aa9.74□□□□□ -0.85
UPF1-210ENST00000600689 ROMO1P60602 79 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 154.8 ms