RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 SMIM29Q86T20 159 aa6.26□□□□□ -1.41
HIF3A-217ENST00000600236 PCOTHQ58A44 107 aa6.24□□□□□ -1.41
HIF3A-217ENST00000600236 Q5XG85 94 aa6.24□□□□□ -1.41
HIF3A-217ENST00000600236 UBL5Q9BZL1 73 aa6.23□□□□□ -1.41
HIF3A-217ENST00000600236 PCP4P48539 62 aa6.22□□□□□ -1.41
HIF3A-217ENST00000600236 F8WEM9 126 aa6.21□□□□□ -1.42
HIF3A-217ENST00000600236 Q6ZVQ6 151 aa6.2□□□□□ -1.42
HIF3A-217ENST00000600236 A0A1W2PNM2 257 aa6.19□□□□□ -1.42
HIF3A-217ENST00000600236 LCE2DQ5TA82 110 aaPredicted RBP6.19□□□□□ -1.42
HIF3A-217ENST00000600236 C1orf195Q5TG92 126 aa6.19□□□□□ -1.42
HIF3A-217ENST00000600236 CXCL6P80162 114 aa6.17□□□□□ -1.42
HIF3A-217ENST00000600236 IGFL1Q6UW32 110 aa6.17□□□□□ -1.42
HIF3A-217ENST00000600236 IGKV3D-7A0A0C4DH55 119 aa6.16□□□□□ -1.42
HIF3A-217ENST00000600236 RPL37P61927 97 aaKnown RBP6.16□□□□□ -1.42
HIF3A-217ENST00000600236 LCE2CQ5TA81 110 aa6.16□□□□□ -1.42
HIF3A-217ENST00000600236 A0A0G2JQZ4 141 aa6.15□□□□□ -1.42
HIF3A-217ENST00000600236 HIST1H4AP62805 103 aaKnown RBP6.15□□□□□ -1.42
HIF3A-217ENST00000600236 MT1HP80294 61 aa6.14□□□□□ -1.43
HIF3A-217ENST00000600236 KRTAP19-2Q3LHN2 52 aa6.13□□□□□ -1.43
HIF3A-217ENST00000600236 FAM236AA0A1B0GUQ0 79 aa6.12□□□□□ -1.43
HIF3A-217ENST00000600236 FAM236BA0A1B0GV22 79 aa6.12□□□□□ -1.43
HIF3A-217ENST00000600236 NREPQ16612 68 aa6.12□□□□□ -1.43
HIF3A-217ENST00000600236 COX6B2Q6YFQ2 88 aa6.11□□□□□ -1.43
HIF3A-217ENST00000600236 M0R2T5 61 aa6.09□□□□□ -1.43
HIF3A-217ENST00000600236 ANAPC13Q9BS18 74 aa6.09□□□□□ -1.43
HIF3A-217ENST00000600236 A0A087WVE0 104 aa6.08□□□□□ -1.44
HIF3A-217ENST00000600236 ATOX1O00244 68 aa6.07□□□□□ -1.44
HIF3A-217ENST00000600236 BPY2O14599 106 aa6.07□□□□□ -1.44
HIF3A-217ENST00000600236 CRCT1Q9UGL9 99 aa6.07□□□□□ -1.44
HIF3A-217ENST00000600236 A0A087WSZ3 146 aa6.06□□□□□ -1.44
HIF3A-217ENST00000600236 ATP11AUNQ6ZP68 121 aa6.06□□□□□ -1.44
HIF3A-217ENST00000600236 IGKV4-1P06312 121 aa6.05□□□□□ -1.44
HIF3A-217ENST00000600236 KRTAP10-6P60371 365 aaPredicted RBP6.04□□□□□ -1.44
HIF3A-217ENST00000600236 SS18L2Q9UHA2 77 aa6.04□□□□□ -1.44
HIF3A-217ENST00000600236 LORP23490 312 aaPredicted RBP6.03□□□□□ -1.44
HIF3A-217ENST00000600236 DSCR10P59022 87 aa6.03□□□□□ -1.44
HIF3A-217ENST00000600236 Q75L30 129 aa6.03□□□□□ -1.44
HIF3A-217ENST00000600236 LINC00472Q9H8W2 130 aa6.01□□□□□ -1.45
HIF3A-217ENST00000600236 J3KT08 172 aa5.99□□□□□ -1.45
HIF3A-217ENST00000600236 SMIM20Q8N5G0 67 aa5.99□□□□□ -1.45
HIF3A-217ENST00000600236 SERP2Q8N6R1 65 aa5.99□□□□□ -1.45
HIF3A-217ENST00000600236 Q8N9L7 120 aa5.99□□□□□ -1.45
HIF3A-217ENST00000600236 Q96NJ1 140 aa5.99□□□□□ -1.45
HIF3A-217ENST00000600236 COX7CP15954 63 aa5.98□□□□□ -1.45
HIF3A-217ENST00000600236 K7EQZ3 153 aa5.97□□□□□ -1.45
HIF3A-217ENST00000600236 UQCRQO14949 82 aa5.97□□□□□ -1.45
HIF3A-217ENST00000600236 TRAV7A0A075B6U4 112 aa5.96□□□□□ -1.46
HIF3A-217ENST00000600236 A8MWP4 228 aa5.96□□□□□ -1.46
HIF3A-217ENST00000600236 CCDC179H3BU77 68 aa5.95□□□□□ -1.46
HIF3A-217ENST00000600236 PRR15Q8IV56 129 aa5.94□□□□□ -1.46
HIF3A-217ENST00000600236 C20orf166-AS1Q96NR2 134 aa5.93□□□□□ -1.46
HIF3A-217ENST00000600236 HCG22E2RYF7 251 aa5.92□□□□□ -1.46
HIF3A-217ENST00000600236 FSIP2Q5CZC0 6907 aa5.91□□□□□ -1.46
HIF3A-217ENST00000600236 A8MUU9 505 aa5.91□□□□□ -1.46
HIF3A-217ENST00000600236 DEFB116Q30KQ4 102 aa5.91□□□□□ -1.46
HIF3A-217ENST00000600236 OCR1Q9BZK8 76 aa5.91□□□□□ -1.46
HIF3A-217ENST00000600236 NDUFB1O75438 58 aa5.89□□□□□ -1.47
HIF3A-217ENST00000600236 MMP24-AS1A0A0U1RRL7 71 aa5.87□□□□□ -1.47
HIF3A-217ENST00000600236 A0A1B0GVX0 72 aa5.87□□□□□ -1.47
HIF3A-217ENST00000600236 LINC00313P59037 77 aa5.85□□□□□ -1.47
HIF3A-217ENST00000600236 CASC2Q6XLA1 102 aa5.85□□□□□ -1.47
HIF3A-217ENST00000600236 KLKP1Q107X0 134 aa5.84□□□□□ -1.47
HIF3A-217ENST00000600236 C8orf17Q9NRJ1 99 aa5.84□□□□□ -1.47
HIF3A-217ENST00000600236 FAM236DA0A1B0GTK5 79 aa5.83□□□□□ -1.48
HIF3A-217ENST00000600236 FAM236CP0DP71 79 aa5.83□□□□□ -1.48
HIF3A-217ENST00000600236 WFDC13Q8IUB5 93 aa5.83□□□□□ -1.48
HIF3A-217ENST00000600236 FLGP20930 4061 aaPredicted RBP5.83□□□□□ -1.48
HIF3A-217ENST00000600236 C20orf197Q8N268 126 aa5.82□□□□□ -1.48
HIF3A-217ENST00000600236 hDV103S1A0JD37 113 aa5.81□□□□□ -1.48
HIF3A-217ENST00000600236 C8orf87E5RJ46 101 aa5.81□□□□□ -1.48
HIF3A-217ENST00000600236 TMEM254Q8TBM7 123 aa5.8□□□□□ -1.48
HIF3A-217ENST00000600236 CYSTM1Q9H1C7 97 aa5.8□□□□□ -1.48
HIF3A-217ENST00000600236 RBM12B-AS1Q9P1G2 102 aa5.8□□□□□ -1.48
HIF3A-217ENST00000600236 IGHV6-1A0A0B4J1U7 121 aa5.79□□□□□ -1.48
HIF3A-217ENST00000600236 NDUFC1O43677 76 aa5.79□□□□□ -1.48
HIF3A-217ENST00000600236 C5orf47Q569G3 176 aa5.79□□□□□ -1.48
HIF3A-217ENST00000600236 KRTAP16-1A8MUX0 517 aa5.78□□□□□ -1.48
HIF3A-217ENST00000600236 TMEM258P61165 79 aa5.78□□□□□ -1.48
HIF3A-217ENST00000600236 MRPL34Q9BQ48 92 aaKnown RBP5.77□□□□□ -1.49
HIF3A-217ENST00000600236 KRTAP9-8Q9BYQ0 159 aa5.77□□□□□ -1.49
HIF3A-217ENST00000600236 TP53AIP1Q9HCN2 124 aa5.77□□□□□ -1.49
HIF3A-217ENST00000600236 H3BPC8 53 aa5.76□□□□□ -1.49
HIF3A-217ENST00000600236 H7BZZ5 65 aa5.76□□□□□ -1.49
HIF3A-217ENST00000600236 ZCCHC13Q8WW36 166 aaKnown RBP5.76□□□□□ -1.49
HIF3A-217ENST00000600236 NOTCH2NLQ7Z3S9 236 aa5.75□□□□□ -1.49
HIF3A-217ENST00000600236 SNURFQ9Y675 71 aa5.75□□□□□ -1.49
HIF3A-217ENST00000600236 HRES1P13985 223 aa5.73□□□□□ -1.49
HIF3A-217ENST00000600236 MP68P56378 58 aa5.73□□□□□ -1.49
HIF3A-217ENST00000600236 TRAV22A0A0B4J277 110 aa5.72□□□□□ -1.49
HIF3A-217ENST00000600236 H0Y9P7 68 aa5.71□□□□□ -1.5
HIF3A-217ENST00000600236 MPLKIPQ8TAP9 179 aa5.71□□□□□ -1.5
HIF3A-217ENST00000600236 ATP5EP56381 51 aaPredicted RBP5.7□□□□□ -1.5
HIF3A-217ENST00000600236 Q8N9P0 234 aaPredicted RBP5.7□□□□□ -1.5
HIF3A-217ENST00000600236 MT2AP02795 61 aa5.68□□□□□ -1.5
HIF3A-217ENST00000600236 NDUFS5O43920 106 aa5.66□□□□□ -1.5
HIF3A-217ENST00000600236 LINC00208Q96KT6 92 aa5.66□□□□□ -1.5
HIF3A-217ENST00000600236 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.65□□□□□ -1.5
HIF3A-217ENST00000600236 KRTAP10-10P60014 251 aa5.65□□□□□ -1.5
HIF3A-217ENST00000600236 SPINK7P58062 85 aa5.64□□□□□ -1.51
HIF3A-217ENST00000600236 RPS28P62857 69 aaKnown RBP5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms