RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.8□□□□□ -1.32
SHKBP1-213ENST00000597325 PRR4Q16378 134 aa6.8□□□□□ -1.32
SHKBP1-213ENST00000597325 SIGMAR1Q99720 223 aa6.8□□□□□ -1.32
SHKBP1-213ENST00000597325 J3KT08 172 aa6.79□□□□□ -1.32
SHKBP1-213ENST00000597325 IGKV4-1P06312 121 aa6.78□□□□□ -1.32
SHKBP1-213ENST00000597325 FP248Q71RG6 208 aaPredicted RBP6.78□□□□□ -1.32
SHKBP1-213ENST00000597325 Q96NJ1 140 aa6.78□□□□□ -1.32
SHKBP1-213ENST00000597325 LINC00472Q9H8W2 130 aa6.78□□□□□ -1.32
SHKBP1-213ENST00000597325 BPY2O14599 106 aa6.77□□□□□ -1.33
SHKBP1-213ENST00000597325 DEFB116Q30KQ4 102 aa6.77□□□□□ -1.33
SHKBP1-213ENST00000597325 ATP5EP2Q5VTU8 51 aa6.74□□□□□ -1.33
SHKBP1-213ENST00000597325 NDUFB1O75438 58 aa6.73□□□□□ -1.33
SHKBP1-213ENST00000597325 IGLV7-46A0A075B6I9 117 aa6.72□□□□□ -1.33
SHKBP1-213ENST00000597325 LINC00643Q86TS7 51 aa6.72□□□□□ -1.33
SHKBP1-213ENST00000597325 A8MWP4 228 aa6.71□□□□□ -1.34
SHKBP1-213ENST00000597325 CXCL6P80162 114 aa6.71□□□□□ -1.34
SHKBP1-213ENST00000597325 IGHV6-1A0A0B4J1U7 121 aa6.69□□□□□ -1.34
SHKBP1-213ENST00000597325 A0A1B0GVX0 72 aa6.69□□□□□ -1.34
SHKBP1-213ENST00000597325 CDIP1Q9H305 208 aa6.69□□□□□ -1.34
SHKBP1-213ENST00000597325 IGKV3D-7A0A0C4DH55 119 aa6.68□□□□□ -1.34
SHKBP1-213ENST00000597325 DSCR10P59022 87 aa6.68□□□□□ -1.34
SHKBP1-213ENST00000597325 K7EQZ3 153 aa6.67□□□□□ -1.34
SHKBP1-213ENST00000597325 PRR15Q8IV56 129 aa6.67□□□□□ -1.34
SHKBP1-213ENST00000597325 C8orf87E5RJ46 101 aa6.66□□□□□ -1.34
SHKBP1-213ENST00000597325 Q8N9L7 120 aa6.65□□□□□ -1.34
SHKBP1-213ENST00000597325 C9orf92A6NGG3 77 aa6.64□□□□□ -1.35
SHKBP1-213ENST00000597325 LINC00313P59037 77 aa6.64□□□□□ -1.35
SHKBP1-213ENST00000597325 TPRXLQ17RH7 258 aa6.64□□□□□ -1.35
SHKBP1-213ENST00000597325 HIST1H4AP62805 103 aaKnown RBP6.63□□□□□ -1.35
SHKBP1-213ENST00000597325 KRTAP13-3Q3SY46 172 aa6.62□□□□□ -1.35
SHKBP1-213ENST00000597325 C8orf17Q9NRJ1 99 aa6.62□□□□□ -1.35
SHKBP1-213ENST00000597325 MMP24-AS1A0A0U1RRL7 71 aa6.59□□□□□ -1.35
SHKBP1-213ENST00000597325 HCG22E2RYF7 251 aa6.58□□□□□ -1.36
SHKBP1-213ENST00000597325 MT-ATP8P03928 68 aa6.58□□□□□ -1.36
SHKBP1-213ENST00000597325 NOTCH2NLQ7Z3S9 236 aa6.58□□□□□ -1.36
SHKBP1-213ENST00000597325 hDV103S1A0JD37 113 aa6.57□□□□□ -1.36
SHKBP1-213ENST00000597325 CASC2Q6XLA1 102 aa6.57□□□□□ -1.36
SHKBP1-213ENST00000597325 WFDC13Q8IUB5 93 aa6.57□□□□□ -1.36
SHKBP1-213ENST00000597325 TMEM254Q8TBM7 123 aa6.56□□□□□ -1.36
SHKBP1-213ENST00000597325 XP32Q5T750 250 aa6.55□□□□□ -1.36
SHKBP1-213ENST00000597325 IMUPQ9GZP8 106 aa6.55□□□□□ -1.36
SHKBP1-213ENST00000597325 A0A087WVE0 104 aa6.54□□□□□ -1.36
SHKBP1-213ENST00000597325 MRPL34Q9BQ48 92 aaKnown RBP6.54□□□□□ -1.36
SHKBP1-213ENST00000597325 SSPOA2VEC9 5147 aa6.53□□□□□ -1.36
SHKBP1-213ENST00000597325 KRTAP16-1A8MUX0 517 aa6.53□□□□□ -1.36
SHKBP1-213ENST00000597325 KRTAP4-1Q9BYQ7 146 aa6.53□□□□□ -1.36
SHKBP1-213ENST00000597325 LCE2CQ5TA81 110 aa6.52□□□□□ -1.37
SHKBP1-213ENST00000597325 NDUFS5O43920 106 aa6.51□□□□□ -1.37
SHKBP1-213ENST00000597325 LORP23490 312 aaPredicted RBP6.5□□□□□ -1.37
SHKBP1-213ENST00000597325 Q75L30 129 aa6.5□□□□□ -1.37
SHKBP1-213ENST00000597325 C20orf166-AS1Q96NR2 134 aa6.5□□□□□ -1.37
SHKBP1-213ENST00000597325 USH2AO75445 5202 aa6.49□□□□□ -1.37
SHKBP1-213ENST00000597325 A8MUU9 505 aa6.49□□□□□ -1.37
SHKBP1-213ENST00000597325 RPL37P61927 97 aaKnown RBP6.49□□□□□ -1.37
SHKBP1-213ENST00000597325 Q8N9P0 234 aaPredicted RBP6.48□□□□□ -1.37
SHKBP1-213ENST00000597325 FCGBPQ9Y6R7 5405 aaPredicted RBP6.48□□□□□ -1.37
SHKBP1-213ENST00000597325 SCGB1A1P11684 91 aa6.46□□□□□ -1.38
SHKBP1-213ENST00000597325 FAM236AA0A1B0GUQ0 79 aa6.45□□□□□ -1.38
SHKBP1-213ENST00000597325 FAM236BA0A1B0GV22 79 aa6.45□□□□□ -1.38
SHKBP1-213ENST00000597325 SEC61BP60468 96 aaKnown RBP6.45□□□□□ -1.38
SHKBP1-213ENST00000597325 MT1HP80294 61 aa6.45□□□□□ -1.38
SHKBP1-213ENST00000597325 ATP11AUNQ6ZP68 121 aa6.45□□□□□ -1.38
SHKBP1-213ENST00000597325 KRTAP10-6P60371 365 aaPredicted RBP6.43□□□□□ -1.38
SHKBP1-213ENST00000597325 KRTAP19-2Q3LHN2 52 aa6.43□□□□□ -1.38
SHKBP1-213ENST00000597325 TP53AIP1Q9HCN2 124 aa6.43□□□□□ -1.38
SHKBP1-213ENST00000597325 ZCCHC13Q8WW36 166 aaKnown RBP6.41□□□□□ -1.38
SHKBP1-213ENST00000597325 FLGP20930 4061 aaPredicted RBP6.4□□□□□ -1.38
SHKBP1-213ENST00000597325 PCOTHQ58A44 107 aa6.4□□□□□ -1.38
SHKBP1-213ENST00000597325 SYNE2Q8WXH0 6885 aaKnown RBP6.4□□□□□ -1.39
SHKBP1-213ENST00000597325 MACF1Q9UPN3 7388 aaKnown RBP6.39□□□□□ -1.39
SHKBP1-213ENST00000597325 ATOX1O00244 68 aa6.38□□□□□ -1.39
SHKBP1-213ENST00000597325 UQCRQO14949 82 aa6.38□□□□□ -1.39
SHKBP1-213ENST00000597325 SMIM20Q8N5G0 67 aa6.37□□□□□ -1.39
SHKBP1-213ENST00000597325 OCR1Q9BZK8 76 aa6.36□□□□□ -1.39
SHKBP1-213ENST00000597325 TRAV22A0A0B4J277 110 aa6.35□□□□□ -1.39
SHKBP1-213ENST00000597325 Q5W150 140 aa6.33□□□□□ -1.4
SHKBP1-213ENST00000597325 H0Y9P7 68 aa6.32□□□□□ -1.4
SHKBP1-213ENST00000597325 TRAV7A0A075B6U4 112 aa6.31□□□□□ -1.4
SHKBP1-213ENST00000597325 MP68P56378 58 aa6.31□□□□□ -1.4
SHKBP1-213ENST00000597325 C5orf47Q569G3 176 aa6.29□□□□□ -1.4
SHKBP1-213ENST00000597325 IGKV2D-30A0A075B6S6 120 aa6.28□□□□□ -1.4
SHKBP1-213ENST00000597325 IGKV2-30P06310 120 aa6.28□□□□□ -1.4
SHKBP1-213ENST00000597325 C7orf65Q6ZTY9 151 aa6.28□□□□□ -1.4
SHKBP1-213ENST00000597325 SERP2Q8N6R1 65 aa6.27□□□□□ -1.41
SHKBP1-213ENST00000597325 LOC101927531A0A1B0GV80 90 aa6.26□□□□□ -1.41
SHKBP1-213ENST00000597325 SPINK7P58062 85 aa6.26□□□□□ -1.41
SHKBP1-213ENST00000597325 H3BPC8 53 aa6.25□□□□□ -1.41
SHKBP1-213ENST00000597325 ANAPC13Q9BS18 74 aa6.25□□□□□ -1.41
SHKBP1-213ENST00000597325 C1orf64Q8NEQ6 169 aa6.24□□□□□ -1.41
SHKBP1-213ENST00000597325 LINC00208Q96KT6 92 aa6.24□□□□□ -1.41
SHKBP1-213ENST00000597325 COX7CP15954 63 aa6.2□□□□□ -1.42
SHKBP1-213ENST00000597325 CYP4F30PQ9H0H9 118 aa6.19□□□□□ -1.42
SHKBP1-213ENST00000597325 KRTAP19-1Q8IUB9 90 aa6.18□□□□□ -1.42
SHKBP1-213ENST00000597325 C20orf197Q8N268 126 aa6.18□□□□□ -1.42
SHKBP1-213ENST00000597325 M0R2T5 61 aa6.17□□□□□ -1.42
SHKBP1-213ENST00000597325 HRES1P13985 223 aa6.16□□□□□ -1.42
SHKBP1-213ENST00000597325 RBM12B-AS1Q9P1G2 102 aa6.16□□□□□ -1.42
SHKBP1-213ENST00000597325 SNURFQ9Y675 71 aa6.15□□□□□ -1.42
SHKBP1-213ENST00000597325 FAM236DA0A1B0GTK5 79 aa6.13□□□□□ -1.43
SHKBP1-213ENST00000597325 FAM236CP0DP71 79 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms