RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DEFB116Q30KQ4 102 aa5.28□□□□□ -1.56
TRIM28-208ENST00000597172 Q6ZVQ6 151 aa5.28□□□□□ -1.56
TRIM28-208ENST00000597172 J3QR89 54 aa5.27□□□□□ -1.57
TRIM28-208ENST00000597172 SYNE2Q8WXH0 6885 aaKnown RBP5.26□□□□□ -1.57
TRIM28-208ENST00000597172 K7ERU9 68 aa5.25□□□□□ -1.57
TRIM28-208ENST00000597172 UBL5Q9BZL1 73 aa5.25□□□□□ -1.57
TRIM28-208ENST00000597172 IGKV4-1P06312 121 aa5.24□□□□□ -1.57
TRIM28-208ENST00000597172 CDIP1Q9H305 208 aa5.24□□□□□ -1.57
TRIM28-208ENST00000597172 J3KT08 172 aa5.22□□□□□ -1.57
TRIM28-208ENST00000597172 DSCR10P59022 87 aa5.22□□□□□ -1.57
TRIM28-208ENST00000597172 FP248Q71RG6 208 aaPredicted RBP5.22□□□□□ -1.57
TRIM28-208ENST00000597172 SIGMAR1Q99720 223 aa5.22□□□□□ -1.57
TRIM28-208ENST00000597172 SSPOA2VEC9 5147 aa5.21□□□□□ -1.57
TRIM28-208ENST00000597172 IGLV7-46A0A075B6I9 117 aa5.21□□□□□ -1.58
TRIM28-208ENST00000597172 BPY2O14599 106 aa5.21□□□□□ -1.58
TRIM28-208ENST00000597172 IGKV3D-7A0A0C4DH55 119 aa5.2□□□□□ -1.58
TRIM28-208ENST00000597172 A8MWP4 228 aa5.19□□□□□ -1.58
TRIM28-208ENST00000597172 NOTCH2NLQ7Z3S9 236 aa5.19□□□□□ -1.58
TRIM28-208ENST00000597172 LINC00643Q86TS7 51 aa5.19□□□□□ -1.58
TRIM28-208ENST00000597172 CXCL6P80162 114 aa5.18□□□□□ -1.58
TRIM28-208ENST00000597172 PRR15Q8IV56 129 aa5.18□□□□□ -1.58
TRIM28-208ENST00000597172 Q8N9L7 120 aa5.18□□□□□ -1.58
TRIM28-208ENST00000597172 FCGBPQ9Y6R7 5405 aaPredicted RBP5.18□□□□□ -1.58
TRIM28-208ENST00000597172 A0A1B0GVX0 72 aa5.17□□□□□ -1.58
TRIM28-208ENST00000597172 K7EQZ3 153 aa5.17□□□□□ -1.58
TRIM28-208ENST00000597172 KRTAP13-3Q3SY46 172 aa5.17□□□□□ -1.58
TRIM28-208ENST00000597172 IGHV6-1A0A0B4J1U7 121 aa5.16□□□□□ -1.58
TRIM28-208ENST00000597172 NDUFB1O75438 58 aa5.16□□□□□ -1.58
TRIM28-208ENST00000597172 MACF1Q9UPN3 7388 aaKnown RBP5.15□□□□□ -1.58
TRIM28-208ENST00000597172 C9orf92A6NGG3 77 aa5.15□□□□□ -1.59
TRIM28-208ENST00000597172 ATP5EP2Q5VTU8 51 aa5.15□□□□□ -1.59
TRIM28-208ENST00000597172 USH2AO75445 5202 aa5.15□□□□□ -1.59
TRIM28-208ENST00000597172 TPRXLQ17RH7 258 aa5.14□□□□□ -1.59
TRIM28-208ENST00000597172 MT-ATP8P03928 68 aa5.13□□□□□ -1.59
TRIM28-208ENST00000597172 LINC00313P59037 77 aa5.13□□□□□ -1.59
TRIM28-208ENST00000597172 C8orf17Q9NRJ1 99 aa5.13□□□□□ -1.59
TRIM28-208ENST00000597172 MMP24-AS1A0A0U1RRL7 71 aa5.12□□□□□ -1.59
TRIM28-208ENST00000597172 KRTAP16-1A8MUX0 517 aa5.12□□□□□ -1.59
TRIM28-208ENST00000597172 C8orf87E5RJ46 101 aa5.12□□□□□ -1.59
TRIM28-208ENST00000597172 LORP23490 312 aaPredicted RBP5.1□□□□□ -1.59
TRIM28-208ENST00000597172 XP32Q5T750 250 aa5.1□□□□□ -1.59
TRIM28-208ENST00000597172 A0A087WVE0 104 aa5.09□□□□□ -1.59
TRIM28-208ENST00000597172 HIST1H4AP62805 103 aaKnown RBP5.09□□□□□ -1.59
TRIM28-208ENST00000597172 hDV103S1A0JD37 113 aa5.08□□□□□ -1.6
TRIM28-208ENST00000597172 LCE2CQ5TA81 110 aa5.08□□□□□ -1.6
TRIM28-208ENST00000597172 HCG22E2RYF7 251 aa5.07□□□□□ -1.6
TRIM28-208ENST00000597172 KRTAP10-6P60371 365 aaPredicted RBP5.07□□□□□ -1.6
TRIM28-208ENST00000597172 WFDC13Q8IUB5 93 aa5.07□□□□□ -1.6
TRIM28-208ENST00000597172 TMEM254Q8TBM7 123 aa5.07□□□□□ -1.6
TRIM28-208ENST00000597172 C20orf166-AS1Q96NR2 134 aa5.07□□□□□ -1.6
TRIM28-208ENST00000597172 KRTAP4-1Q9BYQ7 146 aa5.07□□□□□ -1.6
TRIM28-208ENST00000597172 A8MUU9 505 aa5.06□□□□□ -1.6
TRIM28-208ENST00000597172 CASC2Q6XLA1 102 aa5.06□□□□□ -1.6
TRIM28-208ENST00000597172 IMUPQ9GZP8 106 aa5.06□□□□□ -1.6
TRIM28-208ENST00000597172 MT1HP80294 61 aa5.05□□□□□ -1.6
TRIM28-208ENST00000597172 Q8N9P0 234 aaPredicted RBP5.05□□□□□ -1.6
TRIM28-208ENST00000597172 MRPL34Q9BQ48 92 aaKnown RBP5.05□□□□□ -1.6
TRIM28-208ENST00000597172 Q75L30 129 aa5.04□□□□□ -1.6
TRIM28-208ENST00000597172 NEBP20929 6669 aa5.04□□□□□ -1.6
TRIM28-208ENST00000597172 RPL37P61927 97 aaKnown RBP5.03□□□□□ -1.6
TRIM28-208ENST00000597172 NDUFS5O43920 106 aa4.99□□□□□ -1.61
TRIM28-208ENST00000597172 Q5W150 140 aa4.98□□□□□ -1.61
TRIM28-208ENST00000597172 PCOTHQ58A44 107 aa4.97□□□□□ -1.61
TRIM28-208ENST00000597172 FAM236AA0A1B0GUQ0 79 aa4.96□□□□□ -1.62
TRIM28-208ENST00000597172 FAM236BA0A1B0GV22 79 aa4.96□□□□□ -1.62
TRIM28-208ENST00000597172 KRTAP19-2Q3LHN2 52 aa4.96□□□□□ -1.62
TRIM28-208ENST00000597172 ATP11AUNQ6ZP68 121 aa4.96□□□□□ -1.62
TRIM28-208ENST00000597172 ZCCHC13Q8WW36 166 aaKnown RBP4.96□□□□□ -1.62
TRIM28-208ENST00000597172 SEC61BP60468 96 aaKnown RBP4.95□□□□□ -1.62
TRIM28-208ENST00000597172 OCR1Q9BZK8 76 aa4.95□□□□□ -1.62
TRIM28-208ENST00000597172 M0R2T5 61 aa4.94□□□□□ -1.62
TRIM28-208ENST00000597172 TP53AIP1Q9HCN2 124 aa4.94□□□□□ -1.62
TRIM28-208ENST00000597172 SCGB1A1P11684 91 aa4.93□□□□□ -1.62
TRIM28-208ENST00000597172 UQCRQO14949 82 aa4.92□□□□□ -1.62
TRIM28-208ENST00000597172 KRTAP19-1Q8IUB9 90 aa4.91□□□□□ -1.62
TRIM28-208ENST00000597172 KRTAP6-3Q3LI67 103 aa4.9□□□□□ -1.63
TRIM28-208ENST00000597172 ATOX1O00244 68 aa4.89□□□□□ -1.63
TRIM28-208ENST00000597172 TRAV7A0A075B6U4 112 aa4.88□□□□□ -1.63
TRIM28-208ENST00000597172 FLGP20930 4061 aaPredicted RBP4.88□□□□□ -1.63
TRIM28-208ENST00000597172 TRAV22A0A0B4J277 110 aa4.87□□□□□ -1.63
TRIM28-208ENST00000597172 SPINK7P58062 85 aa4.87□□□□□ -1.63
TRIM28-208ENST00000597172 KRTAP20-1Q3LI63 56 aa4.87□□□□□ -1.63
TRIM28-208ENST00000597172 SMIM20Q8N5G0 67 aa4.87□□□□□ -1.63
TRIM28-208ENST00000597172 H0Y9P7 68 aa4.86□□□□□ -1.63
TRIM28-208ENST00000597172 C5orf47Q569G3 176 aa4.86□□□□□ -1.63
TRIM28-208ENST00000597172 IGKV2-30P06310 120 aa4.85□□□□□ -1.63
TRIM28-208ENST00000597172 IGKV2D-30A0A075B6S6 120 aa4.84□□□□□ -1.63
TRIM28-208ENST00000597172 SERP2Q8N6R1 65 aa4.84□□□□□ -1.63
TRIM28-208ENST00000597172 C1orf64Q8NEQ6 169 aa4.83□□□□□ -1.64
TRIM28-208ENST00000597172 LINC00208Q96KT6 92 aa4.83□□□□□ -1.64
TRIM28-208ENST00000597172 CYP4F30PQ9H0H9 118 aa4.83□□□□□ -1.64
TRIM28-208ENST00000597172 HRES1P13985 223 aa4.82□□□□□ -1.64
TRIM28-208ENST00000597172 MP68P56378 58 aa4.82□□□□□ -1.64
TRIM28-208ENST00000597172 C7orf65Q6ZTY9 151 aa4.81□□□□□ -1.64
TRIM28-208ENST00000597172 MUC12Q9UKN1 5478 aa4.81□□□□□ -1.64
TRIM28-208ENST00000597172 LOC101927531A0A1B0GV80 90 aa4.8□□□□□ -1.64
TRIM28-208ENST00000597172 H3BPC8 53 aa4.8□□□□□ -1.64
TRIM28-208ENST00000597172 COX7CP15954 63 aa4.79□□□□□ -1.64
TRIM28-208ENST00000597172 MPLKIPQ8TAP9 179 aa4.79□□□□□ -1.64
TRIM28-208ENST00000597172 KLKP1Q107X0 134 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms