RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TENM1Q9UKZ4 2725 aa6□□□□□ -1.45
LIG3-216ENST00000593099 K7EQZ3 153 aa6□□□□□ -1.45
LIG3-216ENST00000593099 CYSTM1Q9H1C7 97 aa5.99□□□□□ -1.45
LIG3-216ENST00000593099 ASB16-AS1Q495Z4 193 aa5.99□□□□□ -1.45
LIG3-216ENST00000593099 SPRR1BP22528 89 aa5.98□□□□□ -1.45
LIG3-216ENST00000593099 LINC01558Q9Y6Z2 57 aa5.98□□□□□ -1.45
LIG3-216ENST00000593099 COX6B2Q6YFQ2 88 aa5.97□□□□□ -1.45
LIG3-216ENST00000593099 DMBT1Q9UGM3 2413 aaPredicted RBP5.97□□□□□ -1.45
LIG3-216ENST00000593099 SMG1Q96Q15 3661 aaKnown RBP5.96□□□□□ -1.45
LIG3-216ENST00000593099 ZFHX4Q86UP3 3567 aa5.95□□□□□ -1.46
LIG3-216ENST00000593099 NBPF19A0A087WUL8 3843 aa5.94□□□□□ -1.46
LIG3-216ENST00000593099 TENM2Q9NT68 2774 aa5.93□□□□□ -1.46
LIG3-216ENST00000593099 TENM3Q9P273 2699 aa5.92□□□□□ -1.46
LIG3-216ENST00000593099 NDUFAF8A1L188 74 aa5.92□□□□□ -1.46
LIG3-216ENST00000593099 CELSR1Q9NYQ6 3014 aa5.92□□□□□ -1.46
LIG3-216ENST00000593099 OCR1Q9BZK8 76 aa5.91□□□□□ -1.46
LIG3-216ENST00000593099 SPINK7P58062 85 aa5.9□□□□□ -1.47
LIG3-216ENST00000593099 KRTAP4-16G5E9R7 235 aaPredicted RBP5.89□□□□□ -1.47
LIG3-216ENST00000593099 ZFHX3Q15911 3703 aa5.89□□□□□ -1.47
LIG3-216ENST00000593099 LINC00483Q53H64 154 aa5.88□□□□□ -1.47
LIG3-216ENST00000593099 A6NN06 94 aa5.86□□□□□ -1.47
LIG3-216ENST00000593099 Q8N1X5 172 aa5.86□□□□□ -1.47
LIG3-216ENST00000593099 FBN1P35555 2871 aaKnown RBP5.86□□□□□ -1.47
LIG3-216ENST00000593099 Q6ZSA8 131 aa5.86□□□□□ -1.47
LIG3-216ENST00000593099 KRTAP11-1Q8IUC1 163 aa5.84□□□□□ -1.47
LIG3-216ENST00000593099 PKD1L1Q8TDX9 2849 aa5.83□□□□□ -1.48
LIG3-216ENST00000593099 KRTAP7-1Q8IUC3 87 aa5.83□□□□□ -1.48
LIG3-216ENST00000593099 A0A0D9SG42 100 aa5.83□□□□□ -1.48
LIG3-216ENST00000593099 VWFP04275 2813 aa5.83□□□□□ -1.48
LIG3-216ENST00000593099 A0A087X002 238 aa5.83□□□□□ -1.48
LIG3-216ENST00000593099 BSNQ9UPA5 3926 aa5.82□□□□□ -1.48
LIG3-216ENST00000593099 SPENQ96T58 3664 aaKnown RBP5.82□□□□□ -1.48
LIG3-216ENST00000593099 ROMO1P60602 79 aa5.81□□□□□ -1.48
LIG3-216ENST00000593099 A0A1B0GU33 70 aa5.79□□□□□ -1.48
LIG3-216ENST00000593099 ANK3Q12955 4377 aaKnown RBP5.78□□□□□ -1.48
LIG3-216ENST00000593099 LINC00472Q9H8W2 130 aa5.77□□□□□ -1.49
LIG3-216ENST00000593099 KRTAP13-1Q8IUC0 172 aa5.76□□□□□ -1.49
LIG3-216ENST00000593099 TGP01266 2768 aa5.76□□□□□ -1.49
LIG3-216ENST00000593099 CSMD1Q96PZ7 3565 aa5.75□□□□□ -1.49
LIG3-216ENST00000593099 KRTAP25-1Q3LHN0 102 aa5.74□□□□□ -1.49
LIG3-216ENST00000593099 MMP24-AS1A0A0U1RRL7 71 aa5.72□□□□□ -1.49
LIG3-216ENST00000593099 ZCCHC13Q8WW36 166 aaKnown RBP5.72□□□□□ -1.49
LIG3-216ENST00000593099 RPS29P62273 56 aaKnown RBP5.72□□□□□ -1.49
LIG3-216ENST00000593099 ADM2Q7Z4H4 148 aa5.71□□□□□ -1.49
LIG3-216ENST00000593099 KRTAP13-2Q52LG2 175 aa5.7□□□□□ -1.5
LIG3-216ENST00000593099 CSMD2Q7Z408 3487 aa5.69□□□□□ -1.5
LIG3-216ENST00000593099 C20orf166-AS1Q96NR2 134 aa5.68□□□□□ -1.5
LIG3-216ENST00000593099 M0R2T5 61 aa5.68□□□□□ -1.5
LIG3-216ENST00000593099 HRES1P13985 223 aa5.68□□□□□ -1.5
LIG3-216ENST00000593099 A0A1B0GVY2 172 aa5.67□□□□□ -1.5
LIG3-216ENST00000593099 FBN3Q75N90 2809 aa5.65□□□□□ -1.51
LIG3-216ENST00000593099 SPATA8Q6RVD6 105 aa5.61□□□□□ -1.51
LIG3-216ENST00000593099 Q5W150 140 aa5.59□□□□□ -1.51
LIG3-216ENST00000593099 A8MU10 97 aa5.59□□□□□ -1.51
LIG3-216ENST00000593099 KRTAP1-4P0C5Y4 121 aa5.59□□□□□ -1.52
LIG3-216ENST00000593099 RPL37P61927 97 aaKnown RBP5.58□□□□□ -1.52
LIG3-216ENST00000593099 TRRAPQ9Y4A5 3859 aa5.53□□□□□ -1.52
LIG3-216ENST00000593099 SVEP1Q4LDE5 3571 aa5.53□□□□□ -1.52
LIG3-216ENST00000593099 NOTCH2NLQ7Z3S9 236 aa5.51□□□□□ -1.53
LIG3-216ENST00000593099 A8MUU9 505 aa5.5□□□□□ -1.53
LIG3-216ENST00000593099 S4R3F8 94 aa5.5□□□□□ -1.53
LIG3-216ENST00000593099 KRTAP29-1A8MX34 341 aaPredicted RBP5.5□□□□□ -1.53
LIG3-216ENST00000593099 CUBNO60494 3623 aa5.48□□□□□ -1.53
LIG3-216ENST00000593099 PLAC4Q8WY50 150 aa5.48□□□□□ -1.53
LIG3-216ENST00000593099 H1FX-AS1Q4G0G2 97 aa5.46□□□□□ -1.53
LIG3-216ENST00000593099 KRTAP10-8P60410 259 aa5.42□□□□□ -1.54
LIG3-216ENST00000593099 VPS13CQ709C8 3753 aa5.4□□□□□ -1.55
LIG3-216ENST00000593099 TPRXLQ17RH7 258 aa5.4□□□□□ -1.55
LIG3-216ENST00000593099 XP32Q5T750 250 aa5.37□□□□□ -1.55
LIG3-216ENST00000593099 AKAP9Q99996 3911 aa5.36□□□□□ -1.55
LIG3-216ENST00000593099 MEGF8Q7Z7M0 2845 aa5.36□□□□□ -1.55
LIG3-216ENST00000593099 SRRM2Q9UQ35 2752 aaKnown RBP5.36□□□□□ -1.55
LIG3-216ENST00000593099 COL7A1Q02388 2944 aa5.33□□□□□ -1.56
LIG3-216ENST00000593099 ZNF469Q96JG9 3925 aaPredicted RBP5.33□□□□□ -1.56
LIG3-216ENST00000593099 R4GN34 69 aa5.32□□□□□ -1.56
LIG3-216ENST00000593099 KRTAP13-3Q3SY46 172 aa5.3□□□□□ -1.56
LIG3-216ENST00000593099 PP632Q6XCG6 107 aa5.29□□□□□ -1.56
LIG3-216ENST00000593099 HUWE1Q7Z6Z7 4374 aaKnown RBP5.28□□□□□ -1.56
LIG3-216ENST00000593099 DNHD1Q96M86 4753 aa5.24□□□□□ -1.57
LIG3-216ENST00000593099 M0QZ58 72 aa5.22□□□□□ -1.57
LIG3-216ENST00000593099 C10orf95Q9H7T3 257 aa5.21□□□□□ -1.58
LIG3-216ENST00000593099 DNAH9Q9NYC9 4486 aa5.19□□□□□ -1.58
LIG3-216ENST00000593099 P0C880 135 aa5.17□□□□□ -1.58
LIG3-216ENST00000593099 MT1HL1P0DM35 61 aa5.15□□□□□ -1.59
LIG3-216ENST00000593099 KRTAP4-5Q9BYR2 181 aa5.14□□□□□ -1.59
LIG3-216ENST00000593099 KRTAP10-4P60372 401 aaPredicted RBP5.12□□□□□ -1.59
LIG3-216ENST00000593099 ALMS1Q8TCU4 4167 aa5.12□□□□□ -1.59
LIG3-216ENST00000593099 KRTAP10-10P60014 251 aa4.99□□□□□ -1.61
LIG3-216ENST00000593099 PLECQ15149 4684 aaKnown RBP4.98□□□□□ -1.61
LIG3-216ENST00000593099 KRTAP23-1A1A580 65 aa4.96□□□□□ -1.61
LIG3-216ENST00000593099 ANK2Q01484 3957 aa4.96□□□□□ -1.62
LIG3-216ENST00000593099 DNAH5Q8TE73 4624 aa4.94□□□□□ -1.62
LIG3-216ENST00000593099 DNAH11Q96DT5 4516 aa4.93□□□□□ -1.62
LIG3-216ENST00000593099 PRKDCP78527 4128 aaKnown RBP4.92□□□□□ -1.62
LIG3-216ENST00000593099 VPS13DQ5THJ4 4388 aa4.9□□□□□ -1.62
LIG3-216ENST00000593099 H0YAA0 97 aa4.9□□□□□ -1.63
LIG3-216ENST00000593099 TNP1P09430 55 aa4.9□□□□□ -1.63
LIG3-216ENST00000593099 DNAH1Q9P2D7 4330 aa4.88□□□□□ -1.63
LIG3-216ENST00000593099 DNAH10Q8IVF4 4471 aa4.86□□□□□ -1.63
LIG3-216ENST00000593099 STARD9Q9P2P6 4700 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms