RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 LOC110117498A0A087WWA1 95 aa3.09□□□□□ -1.91
LIG3-210ENST00000588109 TRBV7-4A0A0J9YYF1 115 aa3.09□□□□□ -1.91
LIG3-210ENST00000588109 CCKP06307 115 aa3.09□□□□□ -1.91
LIG3-210ENST00000588109 KRTAP2-2Q9BYT5 123 aa3.09□□□□□ -1.91
LIG3-210ENST00000588109 FAM240AA0A1B0GVK7 77 aa3.08□□□□□ -1.92
LIG3-210ENST00000588109 KRTAP10-8P60410 259 aa3.08□□□□□ -1.92
LIG3-210ENST00000588109 SPAG11AQ6PDA7 123 aa3.08□□□□□ -1.92
LIG3-210ENST00000588109 Q6ZQT0 140 aa3.08□□□□□ -1.92
LIG3-210ENST00000588109 FAT3Q8TDW7 4589 aa3.08□□□□□ -1.92
LIG3-210ENST00000588109 FLG2Q5D862 2391 aaPredicted RBP3.08□□□□□ -1.92
LIG3-210ENST00000588109 LRP1Q07954 4544 aaKnown RBP3.07□□□□□ -1.92
LIG3-210ENST00000588109 TRBV7-7A0A0K0K1E9 115 aa3.07□□□□□ -1.92
LIG3-210ENST00000588109 A0A1W2PNM2 257 aa3.07□□□□□ -1.92
LIG3-210ENST00000588109 SPINK1P00995 79 aa3.07□□□□□ -1.92
LIG3-210ENST00000588109 LIMD2Q9BT23 127 aa3.07□□□□□ -1.92
LIG3-210ENST00000588109 A0A087WSZ3 146 aa3.06□□□□□ -1.92
LIG3-210ENST00000588109 Q6Q795 121 aa3.06□□□□□ -1.92
LIG3-210ENST00000588109 TNXBP22105 4242 aa3.06□□□□□ -1.92
LIG3-210ENST00000588109 MYCBP2O75592 4640 aa3.05□□□□□ -1.92
LIG3-210ENST00000588109 A0A1B0GW54 56 aa3.05□□□□□ -1.92
LIG3-210ENST00000588109 J3QR89 54 aa3.05□□□□□ -1.92
LIG3-210ENST00000588109 MT1HL1P0DM35 61 aa3.05□□□□□ -1.92
LIG3-210ENST00000588109 SIGMAR1Q99720 223 aa3.05□□□□□ -1.92
LIG3-210ENST00000588109 SS18L2Q9UHA2 77 aa3.05□□□□□ -1.92
LIG3-210ENST00000588109 SCGB1A1P11684 91 aa3.04□□□□□ -1.92
LIG3-210ENST00000588109 RPS29P62273 56 aaKnown RBP3.04□□□□□ -1.92
LIG3-210ENST00000588109 C1orf195Q5TG92 126 aa3.04□□□□□ -1.92
LIG3-210ENST00000588109 SMIM20Q8N5G0 67 aa3.04□□□□□ -1.92
LIG3-210ENST00000588109 ABCA13Q86UQ4 5058 aa3.04□□□□□ -1.92
LIG3-210ENST00000588109 ACYP1P07311 99 aa3.03□□□□□ -1.92
LIG3-210ENST00000588109 NREPQ16612 68 aa3.03□□□□□ -1.92
LIG3-210ENST00000588109 PRO0628Q9UI54 55 aa3.03□□□□□ -1.92
LIG3-210ENST00000588109 K7ERU9 68 aa3.02□□□□□ -1.93
LIG3-210ENST00000588109 Q5XG85 94 aa3.02□□□□□ -1.93
LIG3-210ENST00000588109 RETNLBQ9BQ08 111 aa3.02□□□□□ -1.93
LIG3-210ENST00000588109 UBL5Q9BZL1 73 aa3.02□□□□□ -1.93
LIG3-210ENST00000588109 LINC00846Q9NV44 126 aa3.02□□□□□ -1.93
LIG3-210ENST00000588109 DEFB116Q30KQ4 102 aa3.01□□□□□ -1.93
LIG3-210ENST00000588109 ASB16-AS1Q495Z4 193 aa3.01□□□□□ -1.93
LIG3-210ENST00000588109 IGKV4-1P06312 121 aa3□□□□□ -1.93
LIG3-210ENST00000588109 J3KT08 172 aa2.99□□□□□ -1.93
LIG3-210ENST00000588109 BPY2O14599 106 aa2.99□□□□□ -1.93
LIG3-210ENST00000588109 PRR4Q16378 134 aa2.99□□□□□ -1.93
LIG3-210ENST00000588109 LINC00472Q9H8W2 130 aa2.99□□□□□ -1.93
LIG3-210ENST00000588109 DMBT1Q9UGM3 2413 aaPredicted RBP2.99□□□□□ -1.93
LIG3-210ENST00000588109 NDUFB1O75438 58 aa2.98□□□□□ -1.93
LIG3-210ENST00000588109 FP248Q71RG6 208 aaPredicted RBP2.98□□□□□ -1.93
LIG3-210ENST00000588109 Q96NJ1 140 aa2.98□□□□□ -1.93
LIG3-210ENST00000588109 PCLOQ9Y6V0 5065 aa2.98□□□□□ -1.93
LIG3-210ENST00000588109 IGLV7-46A0A075B6I9 117 aa2.97□□□□□ -1.93
LIG3-210ENST00000588109 IGHV6-1A0A0B4J1U7 121 aa2.96□□□□□ -1.94
LIG3-210ENST00000588109 IGKV3D-7A0A0C4DH55 119 aa2.96□□□□□ -1.94
LIG3-210ENST00000588109 A8MWP4 228 aa2.96□□□□□ -1.94
LIG3-210ENST00000588109 CXCL6P80162 114 aa2.96□□□□□ -1.94
LIG3-210ENST00000588109 ATP5EP2Q5VTU8 51 aa2.96□□□□□ -1.94
LIG3-210ENST00000588109 LINC00643Q86TS7 51 aa2.96□□□□□ -1.94
LIG3-210ENST00000588109 PRAC1Q96KF2 57 aa2.96□□□□□ -1.94
LIG3-210ENST00000588109 A0A1B0GVX0 72 aa2.95□□□□□ -1.94
LIG3-210ENST00000588109 K7EQZ3 153 aa2.95□□□□□ -1.94
LIG3-210ENST00000588109 DSCR10P59022 87 aa2.95□□□□□ -1.94
LIG3-210ENST00000588109 HIST1H4AP62805 103 aaKnown RBP2.95□□□□□ -1.94
LIG3-210ENST00000588109 Q8N9L7 120 aa2.95□□□□□ -1.94
LIG3-210ENST00000588109 A0A0U1RQV1 116 aa2.94□□□□□ -1.94
LIG3-210ENST00000588109 C9orf92A6NGG3 77 aa2.94□□□□□ -1.94
LIG3-210ENST00000588109 KRTAP10-6P60371 365 aaPredicted RBP2.94□□□□□ -1.94
LIG3-210ENST00000588109 PMAIP1Q13794 54 aa2.94□□□□□ -1.94
LIG3-210ENST00000588109 PRR15Q8IV56 129 aa2.94□□□□□ -1.94
LIG3-210ENST00000588109 C8orf87E5RJ46 101 aa2.93□□□□□ -1.94
LIG3-210ENST00000588109 NDUFS5O43920 106 aa2.93□□□□□ -1.94
LIG3-210ENST00000588109 LINC00313P59037 77 aa2.93□□□□□ -1.94
LIG3-210ENST00000588109 KRTAP10-7P60409 375 aaPredicted RBP2.92□□□□□ -1.94
LIG3-210ENST00000588109 C8orf17Q9NRJ1 99 aa2.92□□□□□ -1.94
LIG3-210ENST00000588109 SMIM26A0A096LP01 95 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 FAM236DA0A1B0GTK5 79 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 HCG22E2RYF7 251 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 MT-ATP8P03928 68 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 FAM236CP0DP71 79 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 TPRXLQ17RH7 258 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 KRTAP13-3Q3SY46 172 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 CASC2Q6XLA1 102 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 NOTCH2NLQ7Z3S9 236 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 WFDC13Q8IUB5 93 aa2.91□□□□□ -1.94
LIG3-210ENST00000588109 MMP24-AS1A0A0U1RRL7 71 aa2.9□□□□□ -1.95
LIG3-210ENST00000588109 hDV103S1A0JD37 113 aa2.9□□□□□ -1.95
LIG3-210ENST00000588109 OCR1Q9BZK8 76 aa2.9□□□□□ -1.95
LIG3-210ENST00000588109 A0A087WVE0 104 aa2.89□□□□□ -1.95
LIG3-210ENST00000588109 TMEM254Q8TBM7 123 aa2.89□□□□□ -1.95
LIG3-210ENST00000588109 MRPL34Q9BQ48 92 aaKnown RBP2.89□□□□□ -1.95
LIG3-210ENST00000588109 IMUPQ9GZP8 106 aa2.89□□□□□ -1.95
LIG3-210ENST00000588109 RBM12B-AS1Q9P1G2 102 aa2.89□□□□□ -1.95
LIG3-210ENST00000588109 HERC1Q15751 4861 aa2.88□□□□□ -1.95
LIG3-210ENST00000588109 LPAP08519 4548 aa2.88□□□□□ -1.95
LIG3-210ENST00000588109 KRTAP16-1A8MUX0 517 aa2.87□□□□□ -1.95
LIG3-210ENST00000588109 PSPHP1O15172 72 aa2.87□□□□□ -1.95
LIG3-210ENST00000588109 A8MUU9 505 aa2.86□□□□□ -1.95
LIG3-210ENST00000588109 RPL37P61927 97 aaKnown RBP2.86□□□□□ -1.95
LIG3-210ENST00000588109 ATP11AUNQ6ZP68 121 aa2.86□□□□□ -1.95
LIG3-210ENST00000588109 C20orf166-AS1Q96NR2 134 aa2.86□□□□□ -1.95
LIG3-210ENST00000588109 FAM236AA0A1B0GUQ0 79 aa2.85□□□□□ -1.95
LIG3-210ENST00000588109 FAM236BA0A1B0GV22 79 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms