RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 Q5XG85 94 aa5.7□□□□□ -1.5
SMCHD1-212ENST00000585229 LINC00304Q8N9R0 145 aa5.7□□□□□ -1.5
SMCHD1-212ENST00000585229 J3QR89 54 aa5.68□□□□□ -1.5
SMCHD1-212ENST00000585229 SPINK1P00995 79 aa5.68□□□□□ -1.5
SMCHD1-212ENST00000585229 VPS25Q9BRG1 176 aa5.68□□□□□ -1.5
SMCHD1-212ENST00000585229 ACYP1P07311 99 aa5.67□□□□□ -1.5
SMCHD1-212ENST00000585229 ASB16-AS1Q495Z4 193 aa5.67□□□□□ -1.5
SMCHD1-212ENST00000585229 A0A087WSZ3 146 aa5.66□□□□□ -1.5
SMCHD1-212ENST00000585229 HRCT1Q6UXD1 115 aa5.66□□□□□ -1.5
SMCHD1-212ENST00000585229 K7ERU9 68 aa5.65□□□□□ -1.5
SMCHD1-212ENST00000585229 LIMD2Q9BT23 127 aa5.65□□□□□ -1.5
SMCHD1-212ENST00000585229 LINC00846Q9NV44 126 aa5.65□□□□□ -1.5
SMCHD1-212ENST00000585229 SS18L2Q9UHA2 77 aa5.65□□□□□ -1.5
SMCHD1-212ENST00000585229 PCLOQ9Y6V0 5065 aa5.65□□□□□ -1.51
SMCHD1-212ENST00000585229 KRTAP5-3Q6L8H2 238 aa5.62□□□□□ -1.51
SMCHD1-212ENST00000585229 Q96NJ1 140 aa5.62□□□□□ -1.51
SMCHD1-212ENST00000585229 A0A0A0MQY5 61 aa5.61□□□□□ -1.51
SMCHD1-212ENST00000585229 Q6ZVQ6 151 aa5.61□□□□□ -1.51
SMCHD1-212ENST00000585229 UBL5Q9BZL1 73 aa5.61□□□□□ -1.51
SMCHD1-212ENST00000585229 LINC00472Q9H8W2 130 aa5.61□□□□□ -1.51
SMCHD1-212ENST00000585229 DMBT1Q9UGM3 2413 aaPredicted RBP5.6□□□□□ -1.51
SMCHD1-212ENST00000585229 NREPQ16612 68 aa5.6□□□□□ -1.51
SMCHD1-212ENST00000585229 C1orf195Q5TG92 126 aa5.59□□□□□ -1.51
SMCHD1-212ENST00000585229 J3KT08 172 aa5.56□□□□□ -1.52
SMCHD1-212ENST00000585229 LINC00643Q86TS7 51 aa5.56□□□□□ -1.52
SMCHD1-212ENST00000585229 ATP5EP2Q5VTU8 51 aa5.55□□□□□ -1.52
SMCHD1-212ENST00000585229 BPY2O14599 106 aa5.54□□□□□ -1.52
SMCHD1-212ENST00000585229 CXCL6P80162 114 aa5.54□□□□□ -1.52
SMCHD1-212ENST00000585229 SIGMAR1Q99720 223 aa5.54□□□□□ -1.52
SMCHD1-212ENST00000585229 DSCR10P59022 87 aa5.53□□□□□ -1.52
SMCHD1-212ENST00000585229 FP248Q71RG6 208 aaPredicted RBP5.53□□□□□ -1.52
SMCHD1-212ENST00000585229 MPLKIPQ8TAP9 179 aa5.53□□□□□ -1.52
SMCHD1-212ENST00000585229 IGKV4-1P06312 121 aa5.52□□□□□ -1.53
SMCHD1-212ENST00000585229 DEFB116Q30KQ4 102 aa5.52□□□□□ -1.53
SMCHD1-212ENST00000585229 A8MWP4 228 aa5.51□□□□□ -1.53
SMCHD1-212ENST00000585229 IGKV3D-7A0A0C4DH55 119 aa5.5□□□□□ -1.53
SMCHD1-212ENST00000585229 RETNLBQ9BQ08 111 aa5.5□□□□□ -1.53
SMCHD1-212ENST00000585229 A0A1B0GVX0 72 aa5.48□□□□□ -1.53
SMCHD1-212ENST00000585229 K7EQZ3 153 aa5.48□□□□□ -1.53
SMCHD1-212ENST00000585229 PRR15Q8IV56 129 aa5.48□□□□□ -1.53
SMCHD1-212ENST00000585229 HERC1Q15751 4861 aa5.48□□□□□ -1.53
SMCHD1-212ENST00000585229 NDUFB1O75438 58 aa5.47□□□□□ -1.53
SMCHD1-212ENST00000585229 MT-ATP8P03928 68 aa5.47□□□□□ -1.53
SMCHD1-212ENST00000585229 C8orf87E5RJ46 101 aa5.46□□□□□ -1.54
SMCHD1-212ENST00000585229 IMUPQ9GZP8 106 aa5.46□□□□□ -1.54
SMCHD1-212ENST00000585229 Q8N9L7 120 aa5.45□□□□□ -1.54
SMCHD1-212ENST00000585229 IGLV7-46A0A075B6I9 117 aa5.44□□□□□ -1.54
SMCHD1-212ENST00000585229 MMP24-AS1A0A0U1RRL7 71 aa5.44□□□□□ -1.54
SMCHD1-212ENST00000585229 C8orf17Q9NRJ1 99 aa5.44□□□□□ -1.54
SMCHD1-212ENST00000585229 HMCN2Q8NDA2 5059 aa5.44□□□□□ -1.54
SMCHD1-212ENST00000585229 IGHV6-1A0A0B4J1U7 121 aa5.43□□□□□ -1.54
SMCHD1-212ENST00000585229 PRR4Q16378 134 aa5.42□□□□□ -1.54
SMCHD1-212ENST00000585229 TPRXLQ17RH7 258 aa5.42□□□□□ -1.54
SMCHD1-212ENST00000585229 KRTAP13-3Q3SY46 172 aa5.42□□□□□ -1.54
SMCHD1-212ENST00000585229 NOTCH2NLQ7Z3S9 236 aa5.42□□□□□ -1.54
SMCHD1-212ENST00000585229 KRTAP16-1A8MUX0 517 aa5.41□□□□□ -1.54
SMCHD1-212ENST00000585229 HIST1H4AP62805 103 aaKnown RBP5.41□□□□□ -1.54
SMCHD1-212ENST00000585229 HCG22E2RYF7 251 aa5.4□□□□□ -1.54
SMCHD1-212ENST00000585229 LINC00313P59037 77 aa5.4□□□□□ -1.54
SMCHD1-212ENST00000585229 A0A087WVE0 104 aa5.39□□□□□ -1.55
SMCHD1-212ENST00000585229 TMEM254Q8TBM7 123 aa5.39□□□□□ -1.55
SMCHD1-212ENST00000585229 hDV103S1A0JD37 113 aa5.38□□□□□ -1.55
SMCHD1-212ENST00000585229 KRTAP9-8Q9BYQ0 159 aa5.38□□□□□ -1.55
SMCHD1-212ENST00000585229 C9orf92A6NGG3 77 aa5.37□□□□□ -1.55
SMCHD1-212ENST00000585229 CASC2Q6XLA1 102 aa5.37□□□□□ -1.55
SMCHD1-212ENST00000585229 Q8N9P0 234 aaPredicted RBP5.37□□□□□ -1.55
SMCHD1-212ENST00000585229 WFDC13Q8IUB5 93 aa5.36□□□□□ -1.55
SMCHD1-212ENST00000585229 C20orf166-AS1Q96NR2 134 aa5.36□□□□□ -1.55
SMCHD1-212ENST00000585229 MRPL34Q9BQ48 92 aaKnown RBP5.36□□□□□ -1.55
SMCHD1-212ENST00000585229 LPAP08519 4548 aa5.36□□□□□ -1.55
SMCHD1-212ENST00000585229 LRP2P98164 4655 aa5.35□□□□□ -1.55
SMCHD1-212ENST00000585229 A8MUU9 505 aa5.35□□□□□ -1.55
SMCHD1-212ENST00000585229 Q75L30 129 aa5.33□□□□□ -1.56
SMCHD1-212ENST00000585229 FAM236AA0A1B0GUQ0 79 aa5.32□□□□□ -1.56
SMCHD1-212ENST00000585229 FAM236BA0A1B0GV22 79 aa5.32□□□□□ -1.56
SMCHD1-212ENST00000585229 MUC17Q685J3 4493 aa5.31□□□□□ -1.56
SMCHD1-212ENST00000585229 IGKV2-30P06310 120 aa5.31□□□□□ -1.56
SMCHD1-212ENST00000585229 RPL37P61927 97 aaKnown RBP5.3□□□□□ -1.56
SMCHD1-212ENST00000585229 SCGB1A1P11684 91 aa5.28□□□□□ -1.56
SMCHD1-212ENST00000585229 OCR1Q9BZK8 76 aa5.28□□□□□ -1.56
SMCHD1-212ENST00000585229 TP53AIP1Q9HCN2 124 aa5.28□□□□□ -1.56
SMCHD1-212ENST00000585229 ATOX1O00244 68 aa5.26□□□□□ -1.57
SMCHD1-212ENST00000585229 LCE1AQ5T7P2 110 aa5.26□□□□□ -1.57
SMCHD1-212ENST00000585229 UQCRQO14949 82 aa5.25□□□□□ -1.57
SMCHD1-212ENST00000585229 NDUFS5O43920 106 aa5.25□□□□□ -1.57
SMCHD1-212ENST00000585229 SMIM20Q8N5G0 67 aa5.25□□□□□ -1.57
SMCHD1-212ENST00000585229 ZCCHC13Q8WW36 166 aaKnown RBP5.25□□□□□ -1.57
SMCHD1-212ENST00000585229 TRAV7A0A075B6U4 112 aa5.23□□□□□ -1.57
SMCHD1-212ENST00000585229 Q5W150 140 aa5.23□□□□□ -1.57
SMCHD1-212ENST00000585229 TRAV22A0A0B4J277 110 aa5.21□□□□□ -1.58
SMCHD1-212ENST00000585229 SEC61BP60468 96 aaKnown RBP5.21□□□□□ -1.58
SMCHD1-212ENST00000585229 ATP11AUNQ6ZP68 121 aa5.21□□□□□ -1.58
SMCHD1-212ENST00000585229 PCOTHQ58A44 107 aa5.19□□□□□ -1.58
SMCHD1-212ENST00000585229 SERP2Q8N6R1 65 aa5.19□□□□□ -1.58
SMCHD1-212ENST00000585229 C5orf47Q569G3 176 aa5.18□□□□□ -1.58
SMCHD1-212ENST00000585229 H0Y9P7 68 aa5.17□□□□□ -1.58
SMCHD1-212ENST00000585229 H3BPC8 53 aa5.17□□□□□ -1.58
SMCHD1-212ENST00000585229 COX7CP15954 63 aa5.15□□□□□ -1.59
SMCHD1-212ENST00000585229 ANAPC13Q9BS18 74 aa5.15□□□□□ -1.59
SMCHD1-212ENST00000585229 LOC101927531A0A1B0GV80 90 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms