RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RPL37P61927 97 aaKnown RBP6.66□□□□□ -1.34
SS18-225ENST00000585121 Q6ZQT0 140 aa6.66□□□□□ -1.34
SS18-225ENST00000585121 A0A1B0GV72 72 aa6.65□□□□□ -1.35
SS18-225ENST00000585121 A0A1B0GW54 56 aa6.64□□□□□ -1.35
SS18-225ENST00000585121 Q6Q795 121 aa6.64□□□□□ -1.35
SS18-225ENST00000585121 KRTAP9-2Q9BYQ4 174 aa6.63□□□□□ -1.35
SS18-225ENST00000585121 VPS25Q9BRG1 176 aa6.6□□□□□ -1.35
SS18-225ENST00000585121 A0A087WSZ3 146 aa6.6□□□□□ -1.35
SS18-225ENST00000585121 ATP11AUNQ6ZP68 121 aa6.59□□□□□ -1.35
SS18-225ENST00000585121 Q75L30 129 aa6.57□□□□□ -1.36
SS18-225ENST00000585121 LINC00846Q9NV44 126 aa6.57□□□□□ -1.36
SS18-225ENST00000585121 A0A1W2PNM2 257 aa6.56□□□□□ -1.36
SS18-225ENST00000585121 LCE2CQ5TA81 110 aa6.56□□□□□ -1.36
SS18-225ENST00000585121 Q96NJ1 140 aa6.56□□□□□ -1.36
SS18-225ENST00000585121 COX6B2Q6YFQ2 88 aa6.55□□□□□ -1.36
SS18-225ENST00000585121 LINC00643Q86TS7 51 aa6.55□□□□□ -1.36
SS18-225ENST00000585121 UBL5Q9BZL1 73 aa6.55□□□□□ -1.36
SS18-225ENST00000585121 KRTAP19-2Q3LHN2 52 aa6.55□□□□□ -1.36
SS18-225ENST00000585121 SIGMAR1Q99720 223 aa6.54□□□□□ -1.36
SS18-225ENST00000585121 MT1HP80294 61 aa6.51□□□□□ -1.37
SS18-225ENST00000585121 NREPQ16612 68 aa6.5□□□□□ -1.37
SS18-225ENST00000585121 Q6ZVQ6 151 aa6.5□□□□□ -1.37
SS18-225ENST00000585121 M0R2T5 61 aa6.49□□□□□ -1.37
SS18-225ENST00000585121 IGKV4-1P06312 121 aa6.49□□□□□ -1.37
SS18-225ENST00000585121 ATP5EP2Q5VTU8 51 aa6.49□□□□□ -1.37
SS18-225ENST00000585121 C20orf166-AS1Q96NR2 134 aa6.49□□□□□ -1.37
SS18-225ENST00000585121 DSCR10P59022 87 aa6.48□□□□□ -1.37
SS18-225ENST00000585121 IMUPQ9GZP8 106 aa6.48□□□□□ -1.37
SS18-225ENST00000585121 FLGP20930 4061 aaPredicted RBP6.47□□□□□ -1.37
SS18-225ENST00000585121 A8MUU9 505 aa6.47□□□□□ -1.37
SS18-225ENST00000585121 MT-ATP8P03928 68 aa6.47□□□□□ -1.37
SS18-225ENST00000585121 LINC00313P59037 77 aa6.47□□□□□ -1.37
SS18-225ENST00000585121 CXCL6P80162 114 aa6.45□□□□□ -1.38
SS18-225ENST00000585121 DEFB116Q30KQ4 102 aa6.43□□□□□ -1.38
SS18-225ENST00000585121 LINC00472Q9H8W2 130 aa6.43□□□□□ -1.38
SS18-225ENST00000585121 IGKV3D-7A0A0C4DH55 119 aa6.42□□□□□ -1.38
SS18-225ENST00000585121 BPY2O14599 106 aa6.42□□□□□ -1.38
SS18-225ENST00000585121 KRTAP9-6A0A140TA67 174 aa6.41□□□□□ -1.38
SS18-225ENST00000585121 IGHV6-1A0A0B4J1U7 121 aa6.4□□□□□ -1.38
SS18-225ENST00000585121 KRTAP10-6P60371 365 aaPredicted RBP6.4□□□□□ -1.38
SS18-225ENST00000585121 J3KT08 172 aa6.39□□□□□ -1.39
SS18-225ENST00000585121 SCGB1A1P11684 91 aa6.39□□□□□ -1.39
SS18-225ENST00000585121 LORP23490 312 aaPredicted RBP6.38□□□□□ -1.39
SS18-225ENST00000585121 C8orf87E5RJ46 101 aa6.37□□□□□ -1.39
SS18-225ENST00000585121 KRTAP16-1A8MUX0 517 aa6.36□□□□□ -1.39
SS18-225ENST00000585121 HIST1H4AP62805 103 aaKnown RBP6.36□□□□□ -1.39
SS18-225ENST00000585121 A0A1B0GVX0 72 aa6.35□□□□□ -1.39
SS18-225ENST00000585121 NOTCH2NLQ7Z3S9 236 aa6.35□□□□□ -1.39
SS18-225ENST00000585121 NDUFB1O75438 58 aa6.34□□□□□ -1.39
SS18-225ENST00000585121 FAM236DA0A1B0GTK5 79 aa6.32□□□□□ -1.4
SS18-225ENST00000585121 A8MWP4 228 aa6.32□□□□□ -1.4
SS18-225ENST00000585121 FAM236CP0DP71 79 aa6.32□□□□□ -1.4
SS18-225ENST00000585121 A0A087WVE0 104 aa6.3□□□□□ -1.4
SS18-225ENST00000585121 RBM12B-AS1Q9P1G2 102 aa6.3□□□□□ -1.4
SS18-225ENST00000585121 K7EQZ3 153 aa6.3□□□□□ -1.4
SS18-225ENST00000585121 PRR15Q8IV56 129 aa6.3□□□□□ -1.4
SS18-225ENST00000585121 Q8N9L7 120 aa6.3□□□□□ -1.4
SS18-225ENST00000585121 FSIP2Q5CZC0 6907 aa6.29□□□□□ -1.4
SS18-225ENST00000585121 FAM236AA0A1B0GUQ0 79 aa6.29□□□□□ -1.4
SS18-225ENST00000585121 FAM236BA0A1B0GV22 79 aa6.29□□□□□ -1.4
SS18-225ENST00000585121 CRCT1Q9UGL9 99 aa6.28□□□□□ -1.4
SS18-225ENST00000585121 ZCCHC13Q8WW36 166 aaKnown RBP6.25□□□□□ -1.41
SS18-225ENST00000585121 ATOX1O00244 68 aa6.25□□□□□ -1.41
SS18-225ENST00000585121 HCG22E2RYF7 251 aa6.24□□□□□ -1.41
SS18-225ENST00000585121 HRES1P13985 223 aa6.24□□□□□ -1.41
SS18-225ENST00000585121 C8orf17Q9NRJ1 99 aa6.24□□□□□ -1.41
SS18-225ENST00000585121 SMIM20Q8N5G0 67 aa6.22□□□□□ -1.41
SS18-225ENST00000585121 Q8N9P0 234 aaPredicted RBP6.22□□□□□ -1.41
SS18-225ENST00000585121 MPLKIPQ8TAP9 179 aa6.21□□□□□ -1.42
SS18-225ENST00000585121 ANAPC13Q9BS18 74 aa6.2□□□□□ -1.42
SS18-225ENST00000585121 MMP24-AS1A0A0U1RRL7 71 aa6.2□□□□□ -1.42
SS18-225ENST00000585121 PCP4P48539 62 aa6.2□□□□□ -1.42
SS18-225ENST00000585121 SPINK7P58062 85 aa6.2□□□□□ -1.42
SS18-225ENST00000585121 CASC2Q6XLA1 102 aa6.2□□□□□ -1.42
SS18-225ENST00000585121 hDV103S1A0JD37 113 aa6.18□□□□□ -1.42
SS18-225ENST00000585121 WFDC13Q8IUB5 93 aa6.18□□□□□ -1.42
SS18-225ENST00000585121 TRAV7A0A075B6U4 112 aa6.16□□□□□ -1.42
SS18-225ENST00000585121 SERP2Q8N6R1 65 aa6.16□□□□□ -1.42
SS18-225ENST00000585121 TMEM254Q8TBM7 123 aa6.16□□□□□ -1.42
SS18-225ENST00000585121 KRTAP9-8Q9BYQ0 159 aa6.15□□□□□ -1.42
SS18-225ENST00000585121 OCR1Q9BZK8 76 aa6.15□□□□□ -1.42
SS18-225ENST00000585121 MRPL34Q9BQ48 92 aaKnown RBP6.15□□□□□ -1.43
SS18-225ENST00000585121 COX7CP15954 63 aa6.14□□□□□ -1.43
SS18-225ENST00000585121 UQCRQO14949 82 aa6.12□□□□□ -1.43
SS18-225ENST00000585121 NDUFS5O43920 106 aa6.12□□□□□ -1.43
SS18-225ENST00000585121 TP53AIP1Q9HCN2 124 aa6.12□□□□□ -1.43
SS18-225ENST00000585121 KRTAP4-8Q9BYQ9 185 aa6.1□□□□□ -1.43
SS18-225ENST00000585121 C5orf47Q569G3 176 aa6.09□□□□□ -1.43
SS18-225ENST00000585121 MT2AP02795 61 aa6.08□□□□□ -1.44
SS18-225ENST00000585121 KRTAP10-10P60014 251 aa6.06□□□□□ -1.44
SS18-225ENST00000585121 USH2AO75445 5202 aa6.05□□□□□ -1.44
SS18-225ENST00000585121 CCDC179H3BU77 68 aa6.04□□□□□ -1.44
SS18-225ENST00000585121 H3BPC8 53 aa6.03□□□□□ -1.44
SS18-225ENST00000585121 MP68P56378 58 aa6.03□□□□□ -1.44
SS18-225ENST00000585121 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.02□□□□□ -1.45
SS18-225ENST00000585121 MT1FP04733 61 aa6.02□□□□□ -1.45
SS18-225ENST00000585121 KLKP1Q107X0 134 aa6.02□□□□□ -1.45
SS18-225ENST00000585121 C20orf197Q8N268 126 aa6.02□□□□□ -1.45
SS18-225ENST00000585121 IGKV2D-30A0A075B6S6 120 aa6.01□□□□□ -1.45
SS18-225ENST00000585121 TRAV22A0A0B4J277 110 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms