RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 ACACBO00763 2458 aa-1.23□□□□□ -2.61
SMCHD1-209ENST00000583441 KDM5DQ9BY66 1539 aa-1.23□□□□□ -2.61
SMCHD1-209ENST00000583441 KCNQ1DNQ9H478 68 aa-1.23□□□□□ -2.61
SMCHD1-209ENST00000583441 HFM1A2PYH4 1435 aa-1.23□□□□□ -2.61
SMCHD1-209ENST00000583441 MED14O60244 1454 aa-1.24□□□□□ -2.61
SMCHD1-209ENST00000583441 PLCH1Q4KWH8 1693 aa-1.24□□□□□ -2.61
SMCHD1-209ENST00000583441 RB1CC1Q8TDY2 1594 aa-1.25□□□□□ -2.61
SMCHD1-209ENST00000583441 DNAH11Q96DT5 4516 aa-1.25□□□□□ -2.61
SMCHD1-209ENST00000583441 MT1HP80294 61 aa-1.25□□□□□ -2.61
SMCHD1-209ENST00000583441 DEFB110Q30KQ9 67 aa-1.25□□□□□ -2.61
SMCHD1-209ENST00000583441 BVES-AS1Q5T3Y7 98 aa-1.25□□□□□ -2.61
SMCHD1-209ENST00000583441 RALGAPBQ86X10 1494 aa-1.25□□□□□ -2.61
SMCHD1-209ENST00000583441 CFAP43Q8NDM7 1665 aa-1.26□□□□□ -2.61
SMCHD1-209ENST00000583441 TRIOO75962 3097 aa-1.26□□□□□ -2.61
SMCHD1-209ENST00000583441 ARHGAP35Q9NRY4 1499 aa-1.26□□□□□ -2.61
SMCHD1-209ENST00000583441 DCAF1Q9Y4B6 1507 aa-1.26□□□□□ -2.61
SMCHD1-209ENST00000583441 RELNP78509 3460 aa-1.27□□□□□ -2.61
SMCHD1-209ENST00000583441 ITSN1Q15811 1721 aa-1.28□□□□□ -2.61
SMCHD1-209ENST00000583441 ERVK-7P63135 1459 aa-1.28□□□□□ -2.61
SMCHD1-209ENST00000583441 CCDC18Q5T9S5 1454 aa-1.28□□□□□ -2.61
SMCHD1-209ENST00000583441 FRYQ5TBA9 3013 aa-1.29□□□□□ -2.62
SMCHD1-209ENST00000583441 RICTORQ6R327 1708 aa-1.29□□□□□ -2.62
SMCHD1-209ENST00000583441 KIAA0586Q9BVV6 1533 aa-1.3□□□□□ -2.62
SMCHD1-209ENST00000583441 CRIP1P50238 77 aa-1.3□□□□□ -2.62
SMCHD1-209ENST00000583441 DEFB1P60022 68 aa-1.3□□□□□ -2.62
SMCHD1-209ENST00000583441 C18orf32Q8TCD1 76 aa-1.3□□□□□ -2.62
SMCHD1-209ENST00000583441 TIMM8BQ9Y5J9 83 aaPredicted RBP-1.3□□□□□ -2.62
SMCHD1-209ENST00000583441 TLN2Q9Y4G6 2542 aa-1.3□□□□□ -2.62
SMCHD1-209ENST00000583441 C5orf42Q9H799 3197 aa-1.31□□□□□ -2.62
SMCHD1-209ENST00000583441 DNAH1Q9P2D7 4330 aa-1.31□□□□□ -2.62
SMCHD1-209ENST00000583441 RANBP2P49792 3224 aaKnown RBP-1.31□□□□□ -2.62
SMCHD1-209ENST00000583441 CD163L1Q9NR16 1453 aa-1.31□□□□□ -2.62
SMCHD1-209ENST00000583441 ZC3H13Q5T200 1668 aaKnown RBP-1.32□□□□□ -2.62
SMCHD1-209ENST00000583441 ITPR1Q14643 2758 aa-1.32□□□□□ -2.62
SMCHD1-209ENST00000583441 CFAP74Q9C0B2 1584 aa-1.32□□□□□ -2.62
SMCHD1-209ENST00000583441 WT1-ASQ06250 92 aa-1.32□□□□□ -2.62
SMCHD1-209ENST00000583441 ANKARQ7Z5J8 1434 aa-1.33□□□□□ -2.62
SMCHD1-209ENST00000583441 KRTAP20-1Q3LI63 56 aa-1.34□□□□□ -2.62
SMCHD1-209ENST00000583441 SMARCA2P51531 1590 aa-1.34□□□□□ -2.62
SMCHD1-209ENST00000583441 ETDCA0A1B0GVM5 59 aa-1.35□□□□□ -2.63
SMCHD1-209ENST00000583441 ENHOQ6UWT2 76 aa-1.35□□□□□ -2.63
SMCHD1-209ENST00000583441 RNF17Q9BXT8 1623 aaKnown RBP-1.36□□□□□ -2.63
SMCHD1-209ENST00000583441 KRTAP19-5Q3LI72 72 aa-1.36□□□□□ -2.63
SMCHD1-209ENST00000583441 INO80Q9ULG1 1556 aaPredicted RBP-1.36□□□□□ -2.63
SMCHD1-209ENST00000583441 SACSQ9NZJ4 4579 aa-1.37□□□□□ -2.63
SMCHD1-209ENST00000583441 TJP1Q07157 1748 aa-1.37□□□□□ -2.63
SMCHD1-209ENST00000583441 CEP295Q9C0D2 2601 aa-1.37□□□□□ -2.63
SMCHD1-209ENST00000583441 ITPR2Q14571 2701 aa-1.38□□□□□ -2.63
SMCHD1-209ENST00000583441 LMTK2Q8IWU2 1503 aa-1.38□□□□□ -2.63
SMCHD1-209ENST00000583441 MINOS1Q5TGZ0 78 aa-1.38□□□□□ -2.63
SMCHD1-209ENST00000583441 EIF2AK4Q9P2K8 1649 aaKnown RBP-1.38□□□□□ -2.63
SMCHD1-209ENST00000583441 CMYA5Q8N3K9 4069 aa-1.38□□□□□ -2.63
SMCHD1-209ENST00000583441 MYO9AB2RTY4 2548 aa-1.38□□□□□ -2.63
SMCHD1-209ENST00000583441 RPS27P42677 84 aaKnown RBP-1.39□□□□□ -2.63
SMCHD1-209ENST00000583441 RPS27LQ71UM5 84 aaKnown RBP-1.39□□□□□ -2.63
SMCHD1-209ENST00000583441 CHD7Q9P2D1 2997 aa-1.39□□□□□ -2.63
SMCHD1-209ENST00000583441 DYNC1H1Q14204 4646 aaKnown RBP-1.39□□□□□ -2.63
SMCHD1-209ENST00000583441 SRCAPQ6ZRS2 3230 aa-1.4□□□□□ -2.63
SMCHD1-209ENST00000583441 BPTFQ12830 3046 aa-1.4□□□□□ -2.63
SMCHD1-209ENST00000583441 MMP24-AS1A0A0U1RRL7 71 aa-1.4□□□□□ -2.63
SMCHD1-209ENST00000583441 H3BVH4 76 aa-1.4□□□□□ -2.63
SMCHD1-209ENST00000583441 ITSN2Q9NZM3 1697 aa-1.41□□□□□ -2.63
SMCHD1-209ENST00000583441 IGLV5-48A0A075B6I7 105 aa-1.41□□□□□ -2.64
SMCHD1-209ENST00000583441 MT1XP80297 61 aa-1.41□□□□□ -2.64
SMCHD1-209ENST00000583441 SPTAN1Q13813 2472 aaKnown RBP-1.41□□□□□ -2.64
SMCHD1-209ENST00000583441 LRBAP50851 2863 aa-1.42□□□□□ -2.64
SMCHD1-209ENST00000583441 H3BUA1 57 aa-1.42□□□□□ -2.64
SMCHD1-209ENST00000583441 MT1HL1P0DM35 61 aa-1.42□□□□□ -2.64
SMCHD1-209ENST00000583441 DEFB114Q30KQ6 69 aa-1.42□□□□□ -2.64
SMCHD1-209ENST00000583441 ANKRD36CQ5JPF3 1778 aa-1.42□□□□□ -2.64
SMCHD1-209ENST00000583441 DNAH7Q8WXX0 4024 aa-1.42□□□□□ -2.64
SMCHD1-209ENST00000583441 TOGARAM1Q9Y4F4 1720 aa-1.43□□□□□ -2.64
SMCHD1-209ENST00000583441 RRBP1Q9P2E9 1410 aaKnown RBP-1.43□□□□□ -2.64
SMCHD1-209ENST00000583441 NRAPQ86VF7 1730 aa-1.43□□□□□ -2.64
SMCHD1-209ENST00000583441 DNAH8Q96JB1 4490 aa-1.45□□□□□ -2.64
SMCHD1-209ENST00000583441 PARP4Q9UKK3 1724 aaKnown RBP-1.45□□□□□ -2.64
SMCHD1-209ENST00000583441 TNP1P09430 55 aa-1.45□□□□□ -2.64
SMCHD1-209ENST00000583441 C6orf48Q9UBA6 75 aa-1.46□□□□□ -2.64
SMCHD1-209ENST00000583441 KIF1AQ12756 1690 aa-1.46□□□□□ -2.64
SMCHD1-209ENST00000583441 CFAP46Q8IYW2 2715 aa-1.47□□□□□ -2.64
SMCHD1-209ENST00000583441 CLPSL2Q6UWE3 100 aa-1.47□□□□□ -2.64
SMCHD1-209ENST00000583441 NOP10Q9NPE3 64 aaKnown RBP-1.47□□□□□ -2.64
SMCHD1-209ENST00000583441 ATXN8Q156A1 80 aa-1.48□□□□□ -2.65
SMCHD1-209ENST00000583441 NHSQ6T4R5 1651 aa-1.48□□□□□ -2.65
SMCHD1-209ENST00000583441 LRRIQ1Q96JM4 1722 aa-1.49□□□□□ -2.65
SMCHD1-209ENST00000583441 ABCA8O94911 1581 aa-1.49□□□□□ -2.65
SMCHD1-209ENST00000583441 SMR3BP02814 79 aaPredicted RBP-1.49□□□□□ -2.65
SMCHD1-209ENST00000583441 KRTAP19-6Q3LI70 58 aa-1.5□□□□□ -2.65
SMCHD1-209ENST00000583441 FCER1GP30273 86 aa-1.51□□□□□ -2.65
SMCHD1-209ENST00000583441 EYSQ5T1H1 3165 aa-1.52□□□□□ -2.65
SMCHD1-209ENST00000583441 DIP2AQ14689 1571 aa-1.52□□□□□ -2.65
SMCHD1-209ENST00000583441 CDC42BPAQ5VT25 1732 aa-1.52□□□□□ -2.65
SMCHD1-209ENST00000583441 CSMD1Q96PZ7 3565 aa-1.53□□□□□ -2.65
SMCHD1-209ENST00000583441 ABCC6O95255 1503 aa-1.53□□□□□ -2.65
SMCHD1-209ENST00000583441 MT1EP04732 61 aa-1.53□□□□□ -2.65
SMCHD1-209ENST00000583441 DYNC2H1Q8NCM8 4307 aaKnown RBP-1.53□□□□□ -2.65
SMCHD1-209ENST00000583441 DNMBPQ6XZF7 1577 aa-1.55□□□□□ -2.66
SMCHD1-209ENST00000583441 SPTBN5Q9NRC6 3674 aaKnown RBP-1.55□□□□□ -2.66
SMCHD1-209ENST00000583441 SMG1Q96Q15 3661 aaKnown RBP-1.56□□□□□ -2.66
SMCHD1-209ENST00000583441 ADGRG4Q8IZF6 3080 aa-1.56□□□□□ -2.66
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms