RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 A0A087WTM6 91 aa7.27□□□□□ -1.25
SHMT1-208ENST00000582352 A0A087X002 238 aa7.27□□□□□ -1.25
SHMT1-208ENST00000582352 ZNF861PO60384 105 aa7.27□□□□□ -1.25
SHMT1-208ENST00000582352 HRES1P13985 223 aa7.27□□□□□ -1.25
SHMT1-208ENST00000582352 NOTCH2NLQ7Z3S9 236 aa7.27□□□□□ -1.25
SHMT1-208ENST00000582352 RTL8CO15255 209 aa7.26□□□□□ -1.25
SHMT1-208ENST00000582352 ATP11AUNQ6ZP68 121 aa7.26□□□□□ -1.25
SHMT1-208ENST00000582352 SPINK6Q6UWN8 80 aa7.25□□□□□ -1.25
SHMT1-208ENST00000582352 CDC42SE1Q9NRR8 79 aa7.25□□□□□ -1.25
SHMT1-208ENST00000582352 PLAC8Q9NZF1 115 aa7.24□□□□□ -1.25
SHMT1-208ENST00000582352 KTN1-AS1Q86SY8 53 aa7.22□□□□□ -1.25
SHMT1-208ENST00000582352 FRAS1Q86XX4 4008 aa7.21□□□□□ -1.26
SHMT1-208ENST00000582352 CIRBP-AS1Q8TBR5 109 aa7.2□□□□□ -1.26
SHMT1-208ENST00000582352 HECTD4Q9Y4D8 3996 aa7.19□□□□□ -1.26
SHMT1-208ENST00000582352 Q5W150 140 aa7.19□□□□□ -1.26
SHMT1-208ENST00000582352 DNAH8Q96JB1 4490 aa7.17□□□□□ -1.26
SHMT1-208ENST00000582352 SPINK7P58062 85 aa7.17□□□□□ -1.26
SHMT1-208ENST00000582352 KRTAP13-3Q3SY46 172 aa7.17□□□□□ -1.26
SHMT1-208ENST00000582352 A6NN06 94 aa7.16□□□□□ -1.26
SHMT1-208ENST00000582352 IGLV7-43P04211 117 aa7.16□□□□□ -1.26
SHMT1-208ENST00000582352 STARD9Q9P2P6 4700 aa7.16□□□□□ -1.26
SHMT1-208ENST00000582352 PRR26Q8N8Z3 221 aa7.15□□□□□ -1.26
SHMT1-208ENST00000582352 C8orf87E5RJ46 101 aa7.15□□□□□ -1.26
SHMT1-208ENST00000582352 ACYP2P14621 99 aa7.14□□□□□ -1.27
SHMT1-208ENST00000582352 VPS13DQ5THJ4 4388 aa7.14□□□□□ -1.27
SHMT1-208ENST00000582352 SSBP3-AS1Q7Z2R9 100 aa7.11□□□□□ -1.27
SHMT1-208ENST00000582352 DMAC1Q96GE9 116 aa7.09□□□□□ -1.27
SHMT1-208ENST00000582352 FAM229AH3BQW9 127 aa7.09□□□□□ -1.27
SHMT1-208ENST00000582352 LINC00313P59037 77 aa7.08□□□□□ -1.28
SHMT1-208ENST00000582352 DNAH17Q9UFH2 4485 aa7.08□□□□□ -1.28
SHMT1-208ENST00000582352 C1orf134Q5TEV5 83 aa7.08□□□□□ -1.28
SHMT1-208ENST00000582352 C7orf65Q6ZTY9 151 aa7.08□□□□□ -1.28
SHMT1-208ENST00000582352 PRKDCP78527 4128 aaKnown RBP7.08□□□□□ -1.28
SHMT1-208ENST00000582352 FBN3Q75N90 2809 aa7.07□□□□□ -1.28
SHMT1-208ENST00000582352 KMT2AQ03164 3969 aa7.07□□□□□ -1.28
SHMT1-208ENST00000582352 MEGF8Q7Z7M0 2845 aa7.07□□□□□ -1.28
SHMT1-208ENST00000582352 DNAH2Q9P225 4427 aa7.07□□□□□ -1.28
SHMT1-208ENST00000582352 RBM12B-AS1Q9P1G2 102 aa7.07□□□□□ -1.28
SHMT1-208ENST00000582352 RETNLBQ9BQ08 111 aa7.06□□□□□ -1.28
SHMT1-208ENST00000582352 TGP01266 2768 aa7.04□□□□□ -1.28
SHMT1-208ENST00000582352 IGKV2-30P06310 120 aa7.03□□□□□ -1.28
SHMT1-208ENST00000582352 A0A1B0GU69 56 aa7.02□□□□□ -1.29
SHMT1-208ENST00000582352 ALMS1Q8TCU4 4167 aa7.01□□□□□ -1.29
SHMT1-208ENST00000582352 KRTAP13-2Q52LG2 175 aa6.98□□□□□ -1.29
SHMT1-208ENST00000582352 LY6G6CO95867 125 aa6.97□□□□□ -1.29
SHMT1-208ENST00000582352 IGKV2D-30A0A075B6S6 120 aa6.96□□□□□ -1.3
SHMT1-208ENST00000582352 KRTAP16-1A8MUX0 517 aa6.96□□□□□ -1.3
SHMT1-208ENST00000582352 DNAH6Q9C0G6 4158 aa6.95□□□□□ -1.3
SHMT1-208ENST00000582352 KRTAP10-2P60368 255 aa6.95□□□□□ -1.3
SHMT1-208ENST00000582352 DNAH11Q96DT5 4516 aa6.95□□□□□ -1.3
SHMT1-208ENST00000582352 SPATA8Q6RVD6 105 aa6.91□□□□□ -1.3
SHMT1-208ENST00000582352 UQCR11O14957 56 aa6.91□□□□□ -1.3
SHMT1-208ENST00000582352 DNAH5Q8TE73 4624 aa6.9□□□□□ -1.3
SHMT1-208ENST00000582352 MIR22HGQ0VDD5 57 aa6.9□□□□□ -1.31
SHMT1-208ENST00000582352 C4orf48Q5BLP8 95 aa6.88□□□□□ -1.31
SHMT1-208ENST00000582352 Q6ZSA8 131 aa6.88□□□□□ -1.31
SHMT1-208ENST00000582352 KRTAP1-4P0C5Y4 121 aa6.87□□□□□ -1.31
SHMT1-208ENST00000582352 KRTAP10-1P60331 282 aa6.86□□□□□ -1.31
SHMT1-208ENST00000582352 PRAC1Q96KF2 57 aa6.86□□□□□ -1.31
SHMT1-208ENST00000582352 PLA2G1BP04054 148 aaKnown RBP6.84□□□□□ -1.31
SHMT1-208ENST00000582352 TYMSOSQ8TAI1 123 aa6.83□□□□□ -1.32
SHMT1-208ENST00000582352 LRP1BQ9NZR2 4599 aa6.82□□□□□ -1.32
SHMT1-208ENST00000582352 SPINK1P00995 79 aa6.82□□□□□ -1.32
SHMT1-208ENST00000582352 ADM2Q7Z4H4 148 aa6.82□□□□□ -1.32
SHMT1-208ENST00000582352 Q8N1X5 172 aa6.79□□□□□ -1.32
SHMT1-208ENST00000582352 VPS13BQ7Z7G8 4022 aa6.77□□□□□ -1.33
SHMT1-208ENST00000582352 PKD1P98161 4303 aa6.76□□□□□ -1.33
SHMT1-208ENST00000582352 LINC00304Q8N9R0 145 aa6.73□□□□□ -1.33
SHMT1-208ENST00000582352 FAT2Q9NYQ8 4349 aa6.71□□□□□ -1.34
SHMT1-208ENST00000582352 RPS29P62273 56 aaKnown RBP6.7□□□□□ -1.34
SHMT1-208ENST00000582352 LINC01554Q52M75 96 aa6.7□□□□□ -1.34
SHMT1-208ENST00000582352 DNHD1Q96M86 4753 aa6.67□□□□□ -1.34
SHMT1-208ENST00000582352 HYDINQ4G0P3 5121 aa6.66□□□□□ -1.34
SHMT1-208ENST00000582352 CSAG1Q6PB30 78 aa6.65□□□□□ -1.35
SHMT1-208ENST00000582352 C9orf92A6NGG3 77 aa6.64□□□□□ -1.35
SHMT1-208ENST00000582352 H0YAA0 97 aa6.62□□□□□ -1.35
SHMT1-208ENST00000582352 C20orf166-AS1Q96NR2 134 aa6.62□□□□□ -1.35
SHMT1-208ENST00000582352 A8MUU9 505 aa6.61□□□□□ -1.35
SHMT1-208ENST00000582352 A0A1B0GU33 70 aa6.58□□□□□ -1.36
SHMT1-208ENST00000582352 PKHD1P08F94 4074 aa6.57□□□□□ -1.36
SHMT1-208ENST00000582352 SMR3BP02814 79 aaPredicted RBP6.56□□□□□ -1.36
SHMT1-208ENST00000582352 KRTAP3-1Q9BYR8 98 aa6.56□□□□□ -1.36
SHMT1-208ENST00000582352 H1FX-AS1Q4G0G2 97 aa6.55□□□□□ -1.36
SHMT1-208ENST00000582352 SACSQ9NZJ4 4579 aa6.53□□□□□ -1.36
SHMT1-208ENST00000582352 COX6B2Q6YFQ2 88 aa6.47□□□□□ -1.37
SHMT1-208ENST00000582352 PKHD1L1Q86WI1 4243 aa6.46□□□□□ -1.37
SHMT1-208ENST00000582352 K7ERS5 55 aa6.46□□□□□ -1.38
SHMT1-208ENST00000582352 KRTAP25-1Q3LHN0 102 aa6.45□□□□□ -1.38
SHMT1-208ENST00000582352 DYNC1H1Q14204 4646 aaKnown RBP6.44□□□□□ -1.38
SHMT1-208ENST00000582352 KRTAP10-4P60372 401 aaPredicted RBP6.43□□□□□ -1.38
SHMT1-208ENST00000582352 APOBP04114 4563 aaKnown RBP6.43□□□□□ -1.38
SHMT1-208ENST00000582352 FAT1Q14517 4588 aa6.42□□□□□ -1.38
SHMT1-208ENST00000582352 A0A1B0GVY2 172 aa6.37□□□□□ -1.39
SHMT1-208ENST00000582352 FLG2Q5D862 2391 aaPredicted RBP6.37□□□□□ -1.39
SHMT1-208ENST00000582352 CRIPTQ9P021 101 aa6.31□□□□□ -1.4
SHMT1-208ENST00000582352 ROMO1P60602 79 aa6.29□□□□□ -1.4
SHMT1-208ENST00000582352 RPL37P61927 97 aaKnown RBP6.29□□□□□ -1.4
SHMT1-208ENST00000582352 DMBT1Q9UGM3 2413 aaPredicted RBP6.29□□□□□ -1.4
SHMT1-208ENST00000582352 KRTAP10-6P60371 365 aaPredicted RBP6.29□□□□□ -1.4
SHMT1-208ENST00000582352 H3BS24 57 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms