RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 KIAA1109Q2LD37 5005 aa-1.46□□□□□ -2.64
SMCHD1-204ENST00000581226 RB1CC1Q8TDY2 1594 aa-1.47□□□□□ -2.64
SMCHD1-204ENST00000581226 EIF2AK4Q9P2K8 1649 aaKnown RBP-1.47□□□□□ -2.64
SMCHD1-204ENST00000581226 C5orf42Q9H799 3197 aa-1.47□□□□□ -2.64
SMCHD1-204ENST00000581226 KDM5DQ9BY66 1539 aa-1.47□□□□□ -2.64
SMCHD1-204ENST00000581226 ITSN2Q9NZM3 1697 aa-1.48□□□□□ -2.65
SMCHD1-204ENST00000581226 ERVK-7P63135 1459 aa-1.48□□□□□ -2.65
SMCHD1-204ENST00000581226 TLN2Q9Y4G6 2542 aa-1.48□□□□□ -2.65
SMCHD1-204ENST00000581226 H3BUT2 72 aa-1.48□□□□□ -2.65
SMCHD1-204ENST00000581226 LAMA3Q16787 3333 aa-1.48□□□□□ -2.65
SMCHD1-204ENST00000581226 USP9XQ93008 2570 aaPredicted RBP-1.49□□□□□ -2.65
SMCHD1-204ENST00000581226 DEFB131BA0A096LNP1 70 aa-1.49□□□□□ -2.65
SMCHD1-204ENST00000581226 DYNC2H1Q8NCM8 4307 aaKnown RBP-1.49□□□□□ -2.65
SMCHD1-204ENST00000581226 PARP4Q9UKK3 1724 aaKnown RBP-1.49□□□□□ -2.65
SMCHD1-204ENST00000581226 CMYA5Q8N3K9 4069 aa-1.5□□□□□ -2.65
SMCHD1-204ENST00000581226 CFAP74Q9C0B2 1584 aa-1.5□□□□□ -2.65
SMCHD1-204ENST00000581226 SPTBN5Q9NRC6 3674 aaKnown RBP-1.5□□□□□ -2.65
SMCHD1-204ENST00000581226 ADIRFQ15847 76 aa-1.5□□□□□ -2.65
SMCHD1-204ENST00000581226 DEFB106AQ8N104 65 aa-1.5□□□□□ -2.65
SMCHD1-204ENST00000581226 NIPBLQ6KC79 2804 aaeCLIP-1.5□□□□□ -2.65
SMCHD1-204ENST00000581226 A0A087WXM4 84 aa-1.51□□□□□ -2.65
SMCHD1-204ENST00000581226 SMARCA2P51531 1590 aa-1.51□□□□□ -2.65
SMCHD1-204ENST00000581226 THOC2Q8NI27 1593 aaKnown RBP-1.51□□□□□ -2.65
SMCHD1-204ENST00000581226 BVES-AS1Q5T3Y7 98 aa-1.52□□□□□ -2.65
SMCHD1-204ENST00000581226 ABCC1P33527 1531 aa-1.53□□□□□ -2.65
SMCHD1-204ENST00000581226 CRIP1P50238 77 aa-1.53□□□□□ -2.65
SMCHD1-204ENST00000581226 KRTAP19-5Q3LI72 72 aa-1.53□□□□□ -2.65
SMCHD1-204ENST00000581226 NRAPQ86VF7 1730 aa-1.53□□□□□ -2.65
SMCHD1-204ENST00000581226 KCNQ1DNQ9H478 68 aa-1.53□□□□□ -2.65
SMCHD1-204ENST00000581226 ARHGAP35Q9NRY4 1499 aa-1.53□□□□□ -2.65
SMCHD1-204ENST00000581226 NHSQ6T4R5 1651 aa-1.54□□□□□ -2.66
SMCHD1-204ENST00000581226 COL12A1Q99715 3063 aa-1.54□□□□□ -2.66
SMCHD1-204ENST00000581226 KIAA0586Q9BVV6 1533 aa-1.55□□□□□ -2.66
SMCHD1-204ENST00000581226 DEFB110Q30KQ9 67 aa-1.55□□□□□ -2.66
SMCHD1-204ENST00000581226 S100A13Q99584 98 aa-1.55□□□□□ -2.66
SMCHD1-204ENST00000581226 LAMA2P24043 3122 aaKnown RBP-1.55□□□□□ -2.66
SMCHD1-204ENST00000581226 TOGARAM1Q9Y4F4 1720 aa-1.55□□□□□ -2.66
SMCHD1-204ENST00000581226 INO80Q9ULG1 1556 aaPredicted RBP-1.56□□□□□ -2.66
SMCHD1-204ENST00000581226 ITPR1Q14643 2758 aa-1.57□□□□□ -2.66
SMCHD1-204ENST00000581226 DNHD1Q96M86 4753 aa-1.58□□□□□ -2.66
SMCHD1-204ENST00000581226 RNF213Q63HN8 5207 aa-1.58□□□□□ -2.66
SMCHD1-204ENST00000581226 ABCA8O94911 1581 aa-1.59□□□□□ -2.66
SMCHD1-204ENST00000581226 LRRIQ1Q96JM4 1722 aa-1.59□□□□□ -2.66
SMCHD1-204ENST00000581226 MT1HP80294 61 aa-1.59□□□□□ -2.66
SMCHD1-204ENST00000581226 KIF1AQ12756 1690 aa-1.59□□□□□ -2.66
SMCHD1-204ENST00000581226 CCDC18Q5T9S5 1454 aa-1.6□□□□□ -2.67
SMCHD1-204ENST00000581226 HFM1A2PYH4 1435 aa-1.6□□□□□ -2.67
SMCHD1-204ENST00000581226 RALGAPBQ86X10 1494 aa-1.61□□□□□ -2.67
SMCHD1-204ENST00000581226 C18orf32Q8TCD1 76 aa-1.61□□□□□ -2.67
SMCHD1-204ENST00000581226 DNAH7Q8WXX0 4024 aa-1.61□□□□□ -2.67
SMCHD1-204ENST00000581226 CELSR3Q9NYQ7 3312 aa-1.62□□□□□ -2.67
SMCHD1-204ENST00000581226 LMTK2Q8IWU2 1503 aa-1.62□□□□□ -2.67
SMCHD1-204ENST00000581226 SRCAPQ6ZRS2 3230 aa-1.63□□□□□ -2.67
SMCHD1-204ENST00000581226 MRPL33O75394 65 aaKnown RBP-1.63□□□□□ -2.67
SMCHD1-204ENST00000581226 RPS27P42677 84 aaKnown RBP-1.63□□□□□ -2.67
SMCHD1-204ENST00000581226 WT1-ASQ06250 92 aa-1.63□□□□□ -2.67
SMCHD1-204ENST00000581226 RPS27LQ71UM5 84 aaKnown RBP-1.63□□□□□ -2.67
SMCHD1-204ENST00000581226 UBL5Q9BZL1 73 aa-1.63□□□□□ -2.67
SMCHD1-204ENST00000581226 ENHOQ6UWT2 76 aa-1.64□□□□□ -2.67
SMCHD1-204ENST00000581226 DYNC1H1Q14204 4646 aaKnown RBP-1.66□□□□□ -2.68
SMCHD1-204ENST00000581226 DIP2AQ14689 1571 aa-1.67□□□□□ -2.68
SMCHD1-204ENST00000581226 LY75O60449 1722 aa-1.69□□□□□ -2.68
SMCHD1-204ENST00000581226 MYO5CQ9NQX4 1742 aa-1.69□□□□□ -2.68
SMCHD1-204ENST00000581226 RYR2Q92736 4967 aa-1.7□□□□□ -2.68
SMCHD1-204ENST00000581226 ETDCA0A1B0GVM5 59 aa-1.7□□□□□ -2.68
SMCHD1-204ENST00000581226 RRBP1Q9P2E9 1410 aaKnown RBP-1.7□□□□□ -2.68
SMCHD1-204ENST00000581226 LRBAP50851 2863 aa-1.71□□□□□ -2.68
SMCHD1-204ENST00000581226 CDC42BPGQ6DT37 1551 aa-1.71□□□□□ -2.68
SMCHD1-204ENST00000581226 ANKARQ7Z5J8 1434 aa-1.71□□□□□ -2.68
SMCHD1-204ENST00000581226 IGLV5-48A0A075B6I7 105 aa-1.71□□□□□ -2.68
SMCHD1-204ENST00000581226 NCBP2-AS2Q69YL0 99 aa-1.71□□□□□ -2.68
SMCHD1-204ENST00000581226 C3P01024 1663 aa-1.71□□□□□ -2.68
SMCHD1-204ENST00000581226 CHD7Q9P2D1 2997 aa-1.71□□□□□ -2.68
SMCHD1-204ENST00000581226 DNAH17Q9UFH2 4485 aa-1.72□□□□□ -2.68
SMCHD1-204ENST00000581226 IQGAP3Q86VI3 1631 aa-1.72□□□□□ -2.68
SMCHD1-204ENST00000581226 DEFB1P60022 68 aa-1.72□□□□□ -2.68
SMCHD1-204ENST00000581226 MINOS1Q5TGZ0 78 aa-1.72□□□□□ -2.68
SMCHD1-204ENST00000581226 ADGRG4Q8IZF6 3080 aa-1.72□□□□□ -2.69
SMCHD1-204ENST00000581226 SMR3BP02814 79 aaPredicted RBP-1.73□□□□□ -2.69
SMCHD1-204ENST00000581226 ASXL1Q8IXJ9 1541 aa-1.74□□□□□ -2.69
SMCHD1-204ENST00000581226 H3BVH4 76 aa-1.74□□□□□ -2.69
SMCHD1-204ENST00000581226 SPTAN1Q13813 2472 aaKnown RBP-1.76□□□□□ -2.69
SMCHD1-204ENST00000581226 TIMM8BQ9Y5J9 83 aaPredicted RBP-1.76□□□□□ -2.69
SMCHD1-204ENST00000581226 MGAQ8IWI9 3026 aa-1.79□□□□□ -2.7
SMCHD1-204ENST00000581226 CDC42BPAQ5VT25 1732 aa-1.79□□□□□ -2.7
SMCHD1-204ENST00000581226 DNAH10Q8IVF4 4471 aa-1.79□□□□□ -2.7
SMCHD1-204ENST00000581226 MMP24-AS1A0A0U1RRL7 71 aa-1.79□□□□□ -2.7
SMCHD1-204ENST00000581226 ABCA9Q8IUA7 1624 aa-1.8□□□□□ -2.7
SMCHD1-204ENST00000581226 CSMD1Q96PZ7 3565 aa-1.8□□□□□ -2.7
SMCHD1-204ENST00000581226 ABCC6O95255 1503 aa-1.8□□□□□ -2.7
SMCHD1-204ENST00000581226 KRTAP8-1Q8IUC2 63 aa-1.8□□□□□ -2.7
SMCHD1-204ENST00000581226 C6orf48Q9UBA6 75 aa-1.8□□□□□ -2.7
SMCHD1-204ENST00000581226 MYO9AB2RTY4 2548 aa-1.8□□□□□ -2.7
SMCHD1-204ENST00000581226 TNP1P09430 55 aa-1.81□□□□□ -2.7
SMCHD1-204ENST00000581226 DEFB114Q30KQ6 69 aa-1.81□□□□□ -2.7
SMCHD1-204ENST00000581226 SFTA3P0C7M3 94 aa-1.82□□□□□ -2.7
SMCHD1-204ENST00000581226 MROH1Q8NDA8 1641 aa-1.82□□□□□ -2.7
SMCHD1-204ENST00000581226 HILPDAQ9Y5L2 63 aa-1.83□□□□□ -2.7
SMCHD1-204ENST00000581226 CEP295Q9C0D2 2601 aa-1.84□□□□□ -2.7
SMCHD1-204ENST00000581226 DNMBPQ6XZF7 1577 aa-1.85□□□□□ -2.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms