RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 A8MWP4 228 aa4.13□□□□□ -1.75
SMG1-215ENST00000568239 HCG22E2RYF7 251 aa4.12□□□□□ -1.75
SMG1-215ENST00000568239 UQCRQO14949 82 aa4.12□□□□□ -1.75
SMG1-215ENST00000568239 Q96NJ1 140 aa4.12□□□□□ -1.75
SMG1-215ENST00000568239 PRR15Q8IV56 129 aa4.12□□□□□ -1.75
SMG1-215ENST00000568239 PMAIP1Q13794 54 aa4.11□□□□□ -1.75
SMG1-215ENST00000568239 IGHV6-1A0A0B4J1U7 121 aa4.11□□□□□ -1.75
SMG1-215ENST00000568239 TRAV7A0A075B6U4 112 aa4.1□□□□□ -1.75
SMG1-215ENST00000568239 KRTAP10-4P60372 401 aaPredicted RBP4.1□□□□□ -1.75
SMG1-215ENST00000568239 CASC2Q6XLA1 102 aa4.09□□□□□ -1.75
SMG1-215ENST00000568239 C20orf197Q8N268 126 aa4.09□□□□□ -1.75
SMG1-215ENST00000568239 Q5VSD8 79 aa4.08□□□□□ -1.76
SMG1-215ENST00000568239 FLG2Q5D862 2391 aaPredicted RBP4.08□□□□□ -1.76
SMG1-215ENST00000568239 Q5XG85 94 aa4.08□□□□□ -1.76
SMG1-215ENST00000568239 LINC00304Q8N9R0 145 aa4.08□□□□□ -1.76
SMG1-215ENST00000568239 LIMD2Q9BT23 127 aa4.08□□□□□ -1.76
SMG1-215ENST00000568239 A0A1B0GVX0 72 aa4.07□□□□□ -1.76
SMG1-215ENST00000568239 OCR1Q9BZK8 76 aa4.07□□□□□ -1.76
SMG1-215ENST00000568239 HSPG2P98160 4391 aa4.07□□□□□ -1.76
SMG1-215ENST00000568239 KIAA1109Q2LD37 5005 aa4.07□□□□□ -1.76
SMG1-215ENST00000568239 hDV103S1A0JD37 113 aa4.07□□□□□ -1.76
SMG1-215ENST00000568239 SNURFQ9Y675 71 aa4.07□□□□□ -1.76
SMG1-215ENST00000568239 EPPK1P58107 5090 aaKnown RBP4.06□□□□□ -1.76
SMG1-215ENST00000568239 MMP24-AS1A0A0U1RRL7 71 aa4.06□□□□□ -1.76
SMG1-215ENST00000568239 SPINK1P00995 79 aa4.06□□□□□ -1.76
SMG1-215ENST00000568239 C8orf17Q9NRJ1 99 aa4.06□□□□□ -1.76
SMG1-215ENST00000568239 Q75L30 129 aa4.06□□□□□ -1.76
SMG1-215ENST00000568239 NOTCH2NLQ7Z3S9 236 aa4.06□□□□□ -1.76
SMG1-215ENST00000568239 KRTAP29-1A8MX34 341 aaPredicted RBP4.05□□□□□ -1.76
SMG1-215ENST00000568239 NDUFS5O43920 106 aa4.05□□□□□ -1.76
SMG1-215ENST00000568239 CYSTM1Q9H1C7 97 aa4.05□□□□□ -1.76
SMG1-215ENST00000568239 ASB16-AS1Q495Z4 193 aa4.05□□□□□ -1.76
SMG1-215ENST00000568239 TMEM254Q8TBM7 123 aa4.04□□□□□ -1.76
SMG1-215ENST00000568239 RYR1P21817 5038 aa4.04□□□□□ -1.76
SMG1-215ENST00000568239 SPAG11AQ6PDA7 123 aa4.03□□□□□ -1.76
SMG1-215ENST00000568239 LRP1Q07954 4544 aaKnown RBP4.03□□□□□ -1.76
SMG1-215ENST00000568239 A0A0U1RQV1 116 aa4.03□□□□□ -1.76
SMG1-215ENST00000568239 DMBT1Q9UGM3 2413 aaPredicted RBP4.03□□□□□ -1.76
SMG1-215ENST00000568239 C8orf87E5RJ46 101 aa4.02□□□□□ -1.77
SMG1-215ENST00000568239 LINC00313P59037 77 aa4.02□□□□□ -1.77
SMG1-215ENST00000568239 MRPL34Q9BQ48 92 aaKnown RBP4.02□□□□□ -1.77
SMG1-215ENST00000568239 KRTAP17-1Q9BYP8 105 aa4.01□□□□□ -1.77
SMG1-215ENST00000568239 KLKP1Q107X0 134 aa4.01□□□□□ -1.77
SMG1-215ENST00000568239 MP68P56378 58 aa4□□□□□ -1.77
SMG1-215ENST00000568239 RETNLBQ9BQ08 111 aa4□□□□□ -1.77
SMG1-215ENST00000568239 RBM12B-AS1Q9P1G2 102 aa4□□□□□ -1.77
SMG1-215ENST00000568239 PKHD1L1Q86WI1 4243 aa3.99□□□□□ -1.77
SMG1-215ENST00000568239 H0Y9P7 68 aa3.99□□□□□ -1.77
SMG1-215ENST00000568239 Q8N1X5 172 aa3.99□□□□□ -1.77
SMG1-215ENST00000568239 LINC00208Q96KT6 92 aa3.99□□□□□ -1.77
SMG1-215ENST00000568239 RPS29P62273 56 aaKnown RBP3.99□□□□□ -1.77
SMG1-215ENST00000568239 TRAV22A0A0B4J277 110 aa3.98□□□□□ -1.77
SMG1-215ENST00000568239 H7BZZ5 65 aa3.98□□□□□ -1.77
SMG1-215ENST00000568239 TP53AIP1Q9HCN2 124 aa3.98□□□□□ -1.77
SMG1-215ENST00000568239 MYCBP2O75592 4640 aa3.97□□□□□ -1.77
SMG1-215ENST00000568239 TMEM258P61165 79 aa3.96□□□□□ -1.77
SMG1-215ENST00000568239 NDUFC1O43677 76 aa3.96□□□□□ -1.78
SMG1-215ENST00000568239 C9orf92A6NGG3 77 aa3.96□□□□□ -1.78
SMG1-215ENST00000568239 C1orf64Q8NEQ6 169 aa3.96□□□□□ -1.78
SMG1-215ENST00000568239 KRTAP10-8P60410 259 aa3.95□□□□□ -1.78
SMG1-215ENST00000568239 TNXBP22105 4242 aa3.94□□□□□ -1.78
SMG1-215ENST00000568239 Q5W150 140 aa3.93□□□□□ -1.78
SMG1-215ENST00000568239 ZCCHC13Q8WW36 166 aaKnown RBP3.93□□□□□ -1.78
SMG1-215ENST00000568239 KRTAP16-1A8MUX0 517 aa3.93□□□□□ -1.78
SMG1-215ENST00000568239 BRK1Q8WUW1 75 aa3.93□□□□□ -1.78
SMG1-215ENST00000568239 H3BPC8 53 aa3.92□□□□□ -1.78
SMG1-215ENST00000568239 PRR4Q16378 134 aa3.92□□□□□ -1.78
SMG1-215ENST00000568239 PCOTHQ58A44 107 aa3.92□□□□□ -1.78
SMG1-215ENST00000568239 Q8N9P0 234 aaPredicted RBP3.92□□□□□ -1.78
SMG1-215ENST00000568239 KRTAP4-5Q9BYR2 181 aa3.92□□□□□ -1.78
SMG1-215ENST00000568239 FAT3Q8TDW7 4589 aa3.92□□□□□ -1.78
SMG1-215ENST00000568239 MT1HL1P0DM35 61 aa3.89□□□□□ -1.79
SMG1-215ENST00000568239 SEC61BP60468 96 aaKnown RBP3.88□□□□□ -1.79
SMG1-215ENST00000568239 LOC101927531A0A1B0GV80 90 aa3.87□□□□□ -1.79
SMG1-215ENST00000568239 IGKV2D-30A0A075B6S6 120 aa3.87□□□□□ -1.79
SMG1-215ENST00000568239 IGKV2-30P06310 120 aa3.87□□□□□ -1.79
SMG1-215ENST00000568239 KRTAP13-3Q3SY46 172 aa3.87□□□□□ -1.79
SMG1-215ENST00000568239 IGLV7-46A0A075B6I9 117 aa3.87□□□□□ -1.79
SMG1-215ENST00000568239 ATP5EP56381 51 aaPredicted RBP3.87□□□□□ -1.79
SMG1-215ENST00000568239 CYP4F30PQ9H0H9 118 aa3.86□□□□□ -1.79
SMG1-215ENST00000568239 FP248Q71RG6 208 aaPredicted RBP3.84□□□□□ -1.79
SMG1-215ENST00000568239 KTN1-AS1Q86SY8 53 aa3.84□□□□□ -1.79
SMG1-215ENST00000568239 SERP1Q9Y6X1 66 aa3.84□□□□□ -1.79
SMG1-215ENST00000568239 SMIM26A0A096LP01 95 aa3.84□□□□□ -1.8
SMG1-215ENST00000568239 C20orf166-AS1Q96NR2 134 aa3.84□□□□□ -1.8
SMG1-215ENST00000568239 ABCA13Q86UQ4 5058 aa3.83□□□□□ -1.8
SMG1-215ENST00000568239 A8MUN3 132 aa3.83□□□□□ -1.8
SMG1-215ENST00000568239 A8MUU9 505 aa3.83□□□□□ -1.8
SMG1-215ENST00000568239 BIRC6Q9NR09 4857 aa3.83□□□□□ -1.8
SMG1-215ENST00000568239 SPANXA2-OT1Q8N9U9 137 aa3.83□□□□□ -1.8
SMG1-215ENST00000568239 HERC2O95714 4834 aa3.83□□□□□ -1.8
SMG1-215ENST00000568239 HRES1P13985 223 aa3.81□□□□□ -1.8
SMG1-215ENST00000568239 ATP11AUNQ6ZP68 121 aa3.8□□□□□ -1.8
SMG1-215ENST00000568239 C7orf65Q6ZTY9 151 aa3.8□□□□□ -1.8
SMG1-215ENST00000568239 XP32Q5T750 250 aa3.79□□□□□ -1.8
SMG1-215ENST00000568239 SPINK7P58062 85 aa3.77□□□□□ -1.81
SMG1-215ENST00000568239 RPL37P61927 97 aaKnown RBP3.76□□□□□ -1.81
SMG1-215ENST00000568239 COA5Q86WW8 74 aa3.76□□□□□ -1.81
SMG1-215ENST00000568239 LPAP08519 4548 aa3.76□□□□□ -1.81
SMG1-215ENST00000568239 LCA10Q71F78 164 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms