RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 C9JAW5 83 aa6.03□□□□□ -1.44
CLK3-222ENST00000568232 SIGMAR1Q99720 223 aa6.03□□□□□ -1.44
CLK3-222ENST00000568232 A0A1B0GX51 115 aa6.02□□□□□ -1.45
CLK3-222ENST00000568232 SEC61GP60059 68 aa6.02□□□□□ -1.45
CLK3-222ENST00000568232 C1orf195Q5TG92 126 aa6.02□□□□□ -1.45
CLK3-222ENST00000568232 NEBP20929 6669 aa6.01□□□□□ -1.45
CLK3-222ENST00000568232 KRTAP19-6Q3LI70 58 aa6.01□□□□□ -1.45
CLK3-222ENST00000568232 SS18L2Q9UHA2 77 aa6.01□□□□□ -1.45
CLK3-222ENST00000568232 H3BQ85 93 aa6□□□□□ -1.45
CLK3-222ENST00000568232 DNAL4O96015 105 aa6□□□□□ -1.45
CLK3-222ENST00000568232 KRTAP10-10P60014 251 aa6□□□□□ -1.45
CLK3-222ENST00000568232 SMIM20Q8N5G0 67 aa6□□□□□ -1.45
CLK3-222ENST00000568232 LINC00846Q9NV44 126 aa6□□□□□ -1.45
CLK3-222ENST00000568232 OR13C6PQ8NH95 151 aa5.99□□□□□ -1.45
CLK3-222ENST00000568232 S100A7L2Q5SY68 101 aa5.97□□□□□ -1.45
CLK3-222ENST00000568232 SMIM11BQ8TCY0 68 aa5.97□□□□□ -1.45
CLK3-222ENST00000568232 ACYP1P07311 99 aa5.96□□□□□ -1.46
CLK3-222ENST00000568232 CLEC2BQ92478 149 aa5.96□□□□□ -1.46
CLK3-222ENST00000568232 FAM240AA0A1B0GVK7 77 aa5.95□□□□□ -1.46
CLK3-222ENST00000568232 SPRR1BP22528 89 aa5.95□□□□□ -1.46
CLK3-222ENST00000568232 CD164Q04900 197 aa5.95□□□□□ -1.46
CLK3-222ENST00000568232 ATP11AUNQ6ZP68 121 aa5.95□□□□□ -1.46
CLK3-222ENST00000568232 SMIM29Q86T20 159 aa5.95□□□□□ -1.46
CLK3-222ENST00000568232 A0A0G2JQZ4 141 aa5.94□□□□□ -1.46
CLK3-222ENST00000568232 TRBV7-6A0A0J9YX20 115 aa5.94□□□□□ -1.46
CLK3-222ENST00000568232 BAALC-AS2P0C853 105 aa5.94□□□□□ -1.46
CLK3-222ENST00000568232 Q5XG85 94 aa5.94□□□□□ -1.46
CLK3-222ENST00000568232 LAMTOR3Q9UHA4 124 aa5.94□□□□□ -1.46
CLK3-222ENST00000568232 TRAV23DV6A0A075B6W5 121 aa5.93□□□□□ -1.46
CLK3-222ENST00000568232 TMEM256-PLSCR3K7ERE1 68 aa5.92□□□□□ -1.46
CLK3-222ENST00000568232 ZNF73O43830 326 aaPredicted RBP5.92□□□□□ -1.46
CLK3-222ENST00000568232 ORMDL1Q9P0S3 153 aa5.92□□□□□ -1.46
CLK3-222ENST00000568232 KRTAP20-1Q3LI63 56 aa5.91□□□□□ -1.46
CLK3-222ENST00000568232 TEX49A0A1B0GTD5 131 aa5.9□□□□□ -1.46
CLK3-222ENST00000568232 JMJD7-PLA2G4BH0Y9G9 81 aa5.9□□□□□ -1.46
CLK3-222ENST00000568232 KRTAP15-1Q3LI76 137 aa5.9□□□□□ -1.46
CLK3-222ENST00000568232 MUC12Q9UKN1 5478 aa5.9□□□□□ -1.47
CLK3-222ENST00000568232 KRTAP23-1A1A580 65 aa5.88□□□□□ -1.47
CLK3-222ENST00000568232 C6orf99Q4VX62 202 aa5.88□□□□□ -1.47
CLK3-222ENST00000568232 Q75L30 129 aa5.88□□□□□ -1.47
CLK3-222ENST00000568232 DEFB105AQ8NG35 78 aa5.88□□□□□ -1.47
CLK3-222ENST00000568232 FAM218AQ96MZ4 157 aa5.88□□□□□ -1.47
CLK3-222ENST00000568232 hADV29S1A0JD25 119 aa5.87□□□□□ -1.47
CLK3-222ENST00000568232 LINC00575Q6W349 94 aa5.87□□□□□ -1.47
CLK3-222ENST00000568232 OBSCN-AS1Q96MR7 158 aa5.87□□□□□ -1.47
CLK3-222ENST00000568232 PDE6GP18545 87 aa5.86□□□□□ -1.47
CLK3-222ENST00000568232 COX7BP24311 80 aa5.85□□□□□ -1.47
CLK3-222ENST00000568232 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.85□□□□□ -1.47
CLK3-222ENST00000568232 RPS28P62857 69 aaKnown RBP5.84□□□□□ -1.47
CLK3-222ENST00000568232 C20orf166-AS1Q96NR2 134 aa5.84□□□□□ -1.47
CLK3-222ENST00000568232 IMUPQ9GZP8 106 aa5.83□□□□□ -1.48
CLK3-222ENST00000568232 DHRS4-AS1Q9P1J3 65 aa5.83□□□□□ -1.48
CLK3-222ENST00000568232 ELOF1P60002 83 aaKnown RBP5.82□□□□□ -1.48
CLK3-222ENST00000568232 LINC00643Q86TS7 51 aa5.82□□□□□ -1.48
CLK3-222ENST00000568232 V9GYY9 64 aa5.82□□□□□ -1.48
CLK3-222ENST00000568232 FAM236DA0A1B0GTK5 79 aa5.81□□□□□ -1.48
CLK3-222ENST00000568232 FAM236CP0DP71 79 aa5.81□□□□□ -1.48
CLK3-222ENST00000568232 RBM3P98179 157 aaKnown RBP5.8□□□□□ -1.48
CLK3-222ENST00000568232 CCKP06307 115 aa5.79□□□□□ -1.48
CLK3-222ENST00000568232 Q96NJ1 140 aa5.78□□□□□ -1.48
CLK3-222ENST00000568232 DSCR8Q96T75 97 aa5.78□□□□□ -1.48
CLK3-222ENST00000568232 ANAPC13Q9BS18 74 aa5.78□□□□□ -1.48
CLK3-222ENST00000568232 LOC110117498A0A087WWA1 95 aa5.77□□□□□ -1.49
CLK3-222ENST00000568232 Q6ZQY7 126 aa5.77□□□□□ -1.49
CLK3-222ENST00000568232 TRBV7-7A0A0K0K1E9 115 aa5.76□□□□□ -1.49
CLK3-222ENST00000568232 A0A1B0GW54 56 aa5.76□□□□□ -1.49
CLK3-222ENST00000568232 MT-ATP8P03928 68 aa5.76□□□□□ -1.49
CLK3-222ENST00000568232 ATP5EP2Q5VTU8 51 aa5.76□□□□□ -1.49
CLK3-222ENST00000568232 C14orf132Q9NPU4 83 aa5.76□□□□□ -1.49
CLK3-222ENST00000568232 PRO0628Q9UI54 55 aa5.76□□□□□ -1.49
CLK3-222ENST00000568232 J3KT08 172 aa5.74□□□□□ -1.49
CLK3-222ENST00000568232 UBL5Q9BZL1 73 aa5.74□□□□□ -1.49
CLK3-222ENST00000568232 IGFL1Q6UW32 110 aa5.73□□□□□ -1.49
CLK3-222ENST00000568232 KRTAP16-1A8MUX0 517 aa5.72□□□□□ -1.49
CLK3-222ENST00000568232 NDUFV3P56181 108 aaKnown RBP5.72□□□□□ -1.49
CLK3-222ENST00000568232 IGLV5-48A0A075B6I7 105 aa5.71□□□□□ -1.5
CLK3-222ENST00000568232 A8MUU9 505 aa5.71□□□□□ -1.5
CLK3-222ENST00000568232 Q6JHZ5 121 aa5.71□□□□□ -1.5
CLK3-222ENST00000568232 Q6ZQT0 140 aa5.71□□□□□ -1.5
CLK3-222ENST00000568232 MPLKIPQ8TAP9 179 aa5.7□□□□□ -1.5
CLK3-222ENST00000568232 TRBV7-4A0A0J9YYF1 115 aa5.69□□□□□ -1.5
CLK3-222ENST00000568232 CCDC179H3BU77 68 aa5.69□□□□□ -1.5
CLK3-222ENST00000568232 HRES1P13985 223 aa5.69□□□□□ -1.5
CLK3-222ENST00000568232 MDN1Q9NU22 5596 aa5.68□□□□□ -1.5
CLK3-222ENST00000568232 C4orf26Q17RF5 130 aa5.68□□□□□ -1.5
CLK3-222ENST00000568232 Q8N9P0 234 aaPredicted RBP5.68□□□□□ -1.5
CLK3-222ENST00000568232 RBM12B-AS1Q9P1G2 102 aa5.68□□□□□ -1.5
CLK3-222ENST00000568232 F8WEM9 126 aa5.65□□□□□ -1.5
CLK3-222ENST00000568232 CXCL6P80162 114 aa5.65□□□□□ -1.5
CLK3-222ENST00000568232 ATOX1O00244 68 aa5.63□□□□□ -1.51
CLK3-222ENST00000568232 KMT2DO14686 5537 aa5.61□□□□□ -1.51
CLK3-222ENST00000568232 NOTCH2NLQ7Z3S9 236 aa5.61□□□□□ -1.51
CLK3-222ENST00000568232 FAM236AA0A1B0GUQ0 79 aa5.6□□□□□ -1.51
CLK3-222ENST00000568232 FAM236BA0A1B0GV22 79 aa5.6□□□□□ -1.51
CLK3-222ENST00000568232 DSCR10P59022 87 aa5.6□□□□□ -1.51
CLK3-222ENST00000568232 NREPQ16612 68 aa5.6□□□□□ -1.51
CLK3-222ENST00000568232 Q6ZVQ6 151 aa5.6□□□□□ -1.51
CLK3-222ENST00000568232 KRTAP2-3P0C7H8 128 aa5.59□□□□□ -1.51
CLK3-222ENST00000568232 HIST1H4AP62805 103 aaKnown RBP5.59□□□□□ -1.51
CLK3-222ENST00000568232 KRTAP2-4Q9BYR9 128 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms