RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 LINC00308Q8TCZ7 52 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 CELSR1Q9NYQ6 3014 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 TNRC18O15417 2968 aaPredicted RBP0.23□□□□□ -2.37
VPS35-207ENST00000568191 ACACBO00763 2458 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 DCHS2Q6V1P9 2916 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 NFAT5O94916 1531 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 TENM2Q9NT68 2774 aa0.23□□□□□ -2.37
VPS35-207ENST00000568191 ZZEF1O43149 2961 aa0.22□□□□□ -2.37
VPS35-207ENST00000568191 LINC01546A6NGU7 62 aa0.22□□□□□ -2.37
VPS35-207ENST00000568191 TOMM5Q8N4H5 51 aa0.22□□□□□ -2.37
VPS35-207ENST00000568191 KIF21BO75037 1637 aa0.22□□□□□ -2.37
VPS35-207ENST00000568191 TEP1Q99973 2627 aaKnown RBP0.22□□□□□ -2.37
VPS35-207ENST00000568191 ATP7AQ04656 1500 aa0.22□□□□□ -2.37
VPS35-207ENST00000568191 ALMS1Q8TCU4 4167 aa0.22□□□□□ -2.37
VPS35-207ENST00000568191 USP9YO00507 2555 aaPredicted RBP0.21□□□□□ -2.38
VPS35-207ENST00000568191 NBEAL2Q6ZNJ1 2754 aa0.21□□□□□ -2.38
VPS35-207ENST00000568191 WT1-ASQ06250 92 aa0.21□□□□□ -2.38
VPS35-207ENST00000568191 DEFB135Q30KP9 77 aa0.21□□□□□ -2.38
VPS35-207ENST00000568191 DEFB106AQ8N104 65 aa0.21□□□□□ -2.38
VPS35-207ENST00000568191 TIMM8BQ9Y5J9 83 aaPredicted RBP0.21□□□□□ -2.38
VPS35-207ENST00000568191 S4R3F8 94 aa0.21□□□□□ -2.38
VPS35-207ENST00000568191 U3KQA8 63 aa0.21□□□□□ -2.38
VPS35-207ENST00000568191 ANKRD11Q6UB99 2663 aaPredicted RBP0.2□□□□□ -2.38
VPS35-207ENST00000568191 CLTCL1P53675 1640 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 MGAM2Q2M2H8 2515 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 BSNQ9UPA5 3926 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 TRPM2O94759 1503 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 M0R2T5 61 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 TFF3Q07654 80 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 COL6A5A8TX70 2615 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 STAB1Q9NY15 2570 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 NBEAL1Q6ZS30 2694 aa0.2□□□□□ -2.38
VPS35-207ENST00000568191 HRNRQ86YZ3 2850 aaPredicted RBP0.2□□□□□ -2.38
VPS35-207ENST00000568191 GCC2Q8IWJ2 1684 aa0.19□□□□□ -2.38
VPS35-207ENST00000568191 H0YGG7 62 aa0.19□□□□□ -2.38
VPS35-207ENST00000568191 H3BUA1 57 aa0.19□□□□□ -2.38
VPS35-207ENST00000568191 PRM1P04553 51 aa0.19□□□□□ -2.38
VPS35-207ENST00000568191 PRLHP81277 87 aa0.19□□□□□ -2.38
VPS35-207ENST00000568191 HIVEP1P15822 2718 aa0.19□□□□□ -2.38
VPS35-207ENST00000568191 SAMD9LQ8IVG5 1584 aa0.19□□□□□ -2.38
VPS35-207ENST00000568191 WFDC10BQ8IUB3 73 aa0.18□□□□□ -2.38
VPS35-207ENST00000568191 SMIM2Q9BVW6 85 aa0.18□□□□□ -2.38
VPS35-207ENST00000568191 KAAG1Q9UBP8 84 aa0.18□□□□□ -2.38
VPS35-207ENST00000568191 TGP01266 2768 aa0.18□□□□□ -2.38
VPS35-207ENST00000568191 MYO9AB2RTY4 2548 aa0.18□□□□□ -2.38
VPS35-207ENST00000568191 MAP1AP78559 2803 aaPredicted RBP0.17□□□□□ -2.38
VPS35-207ENST00000568191 ZANQ9Y493 2812 aa0.17□□□□□ -2.38
VPS35-207ENST00000568191 NBEAQ8NFP9 2946 aa0.17□□□□□ -2.38
VPS35-207ENST00000568191 FAT2Q9NYQ8 4349 aa0.17□□□□□ -2.38
VPS35-207ENST00000568191 SYNE2Q8WXH0 6885 aaKnown RBP0.17□□□□□ -2.38
VPS35-207ENST00000568191 COL6A3P12111 3177 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 PDZD2O15018 2839 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 COL12A1Q99715 3063 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 IGLV5-48A0A075B6I7 105 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 NDUFA1O15239 70 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 SPRR2DP22532 72 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 NOP10Q9NPE3 64 aaKnown RBP0.16□□□□□ -2.38
VPS35-207ENST00000568191 PRKDCP78527 4128 aaKnown RBP0.16□□□□□ -2.38
VPS35-207ENST00000568191 ITPR3Q14573 2671 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 KMT2AQ03164 3969 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 DMXL1Q9Y485 3027 aa0.16□□□□□ -2.38
VPS35-207ENST00000568191 DUOX1Q9NRD9 1551 aa0.15□□□□□ -2.38
VPS35-207ENST00000568191 TACC2O95359 2948 aa0.15□□□□□ -2.39
VPS35-207ENST00000568191 TLN1Q9Y490 2541 aaKnown RBP0.15□□□□□ -2.39
VPS35-207ENST00000568191 HECTD4Q9Y4D8 3996 aa0.15□□□□□ -2.39
VPS35-207ENST00000568191 MMP24-AS1A0A0U1RRL7 71 aa0.15□□□□□ -2.39
VPS35-207ENST00000568191 DEFB131AP59861 70 aa0.15□□□□□ -2.39
VPS35-207ENST00000568191 COL7A1Q02388 2944 aa0.15□□□□□ -2.39
VPS35-207ENST00000568191 MROH2BQ7Z745 1585 aa0.15□□□□□ -2.39
VPS35-207ENST00000568191 FAT4Q6V0I7 4981 aa0.14□□□□□ -2.39
VPS35-207ENST00000568191 A0A0C4DFX4 3053 aa0.14□□□□□ -2.39
VPS35-207ENST00000568191 C9orf92A6NGG3 77 aa0.14□□□□□ -2.39
VPS35-207ENST00000568191 M0QY20 66 aa0.14□□□□□ -2.39
VPS35-207ENST00000568191 SPRR2BP35325 72 aa0.14□□□□□ -2.39
VPS35-207ENST00000568191 LYSTQ99698 3801 aa0.14□□□□□ -2.39
VPS35-207ENST00000568191 MXRA5Q9NR99 2828 aa0.14□□□□□ -2.39
VPS35-207ENST00000568191 CFAP46Q8IYW2 2715 aa0.14□□□□□ -2.39
VPS35-207ENST00000568191 SYNE1Q8NF91 8797 aaKnown RBP0.14□□□□□ -2.39
VPS35-207ENST00000568191 FSIP2Q5CZC0 6907 aa0.13□□□□□ -2.39
VPS35-207ENST00000568191 ITPR1Q14643 2758 aa0.13□□□□□ -2.39
VPS35-207ENST00000568191 TEX15Q9BXT5 2789 aa0.13□□□□□ -2.39
VPS35-207ENST00000568191 HUWE1Q7Z6Z7 4374 aaKnown RBP0.13□□□□□ -2.39
VPS35-207ENST00000568191 CUBNO60494 3623 aa0.13□□□□□ -2.39
VPS35-207ENST00000568191 H3BNG1 76 aa0.13□□□□□ -2.39
VPS35-207ENST00000568191 WDR87Q6ZQQ6 2873 aa0.12□□□□□ -2.39
VPS35-207ENST00000568191 RANBP2P49792 3224 aaKnown RBP0.12□□□□□ -2.39
VPS35-207ENST00000568191 A8MTW9 85 aa0.12□□□□□ -2.39
VPS35-207ENST00000568191 LRP1Q07954 4544 aaKnown RBP0.12□□□□□ -2.39
VPS35-207ENST00000568191 VPS13BQ7Z7G8 4022 aa0.12□□□□□ -2.39
VPS35-207ENST00000568191 FLGP20930 4061 aaPredicted RBP0.11□□□□□ -2.39
VPS35-207ENST00000568191 CRYBG3Q68DQ2 2970 aa0.11□□□□□ -2.39
VPS35-207ENST00000568191 M0QZ58 72 aa0.11□□□□□ -2.39
VPS35-207ENST00000568191 TNP1P09430 55 aa0.11□□□□□ -2.39
VPS35-207ENST00000568191 SNRPGP62308 76 aaKnown RBP0.11□□□□□ -2.39
VPS35-207ENST00000568191 DEFB110Q30KQ9 67 aa0.11□□□□□ -2.39
VPS35-207ENST00000568191 C5orf42Q9H799 3197 aa0.11□□□□□ -2.39
VPS35-207ENST00000568191 LAMA1P25391 3075 aa0.1□□□□□ -2.39
VPS35-207ENST00000568191 KALRNO60229 2985 aa0.1□□□□□ -2.39
VPS35-207ENST00000568191 LRBAP50851 2863 aa0.1□□□□□ -2.39
VPS35-207ENST00000568191 SPRR2AP35326 72 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms