RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 PRO0255Q9UI72 69 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 R4GN34 69 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 CFAP46Q8IYW2 2715 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 UBR5O95071 2799 aaPredicted RBP1.83□□□□□ -2.12
VPS35-203ENST00000562420 ZNF462Q96JM2 2506 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 FLNBO75369 2602 aaKnown RBP1.83□□□□□ -2.12
VPS35-203ENST00000562420 IGSF10Q6WRI0 2623 aa1.83□□□□□ -2.12
VPS35-203ENST00000562420 ZFYVE26Q68DK2 2539 aa1.82□□□□□ -2.12
VPS35-203ENST00000562420 ICE1Q9Y2F5 2266 aa1.82□□□□□ -2.12
VPS35-203ENST00000562420 G3V318 75 aa1.82□□□□□ -2.12
VPS35-203ENST00000562420 SSBP3-AS1Q7Z2R9 100 aa1.82□□□□□ -2.12
VPS35-203ENST00000562420 DEFB105AQ8NG35 78 aa1.82□□□□□ -2.12
VPS35-203ENST00000562420 USP9XQ93008 2570 aaPredicted RBP1.82□□□□□ -2.12
VPS35-203ENST00000562420 MAST4O15021 2626 aa1.82□□□□□ -2.12
VPS35-203ENST00000562420 PTPN13Q12923 2485 aa1.81□□□□□ -2.12
VPS35-203ENST00000562420 VPS13CQ709C8 3753 aa1.81□□□□□ -2.12
VPS35-203ENST00000562420 INE1O15225 51 aa1.81□□□□□ -2.12
VPS35-203ENST00000562420 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.81□□□□□ -2.123e-8■■■□□ 17.1
VPS35-203ENST00000562420 MUC19Q7Z5P9 8384 aa1.81□□□□□ -2.12
VPS35-203ENST00000562420 SVEP1Q4LDE5 3571 aa1.81□□□□□ -2.12
VPS35-203ENST00000562420 SETXQ7Z333 2677 aaKnown RBP1.81□□□□□ -2.12
VPS35-203ENST00000562420 NBPF19A0A087WUL8 3843 aa1.8□□□□□ -2.12
VPS35-203ENST00000562420 USP9YO00507 2555 aaPredicted RBP1.8□□□□□ -2.12
VPS35-203ENST00000562420 NBEAQ8NFP9 2946 aa1.8□□□□□ -2.12
VPS35-203ENST00000562420 HTN1P15515 57 aa1.8□□□□□ -2.12
VPS35-203ENST00000562420 DEFB1P60022 68 aa1.8□□□□□ -2.12
VPS35-203ENST00000562420 PLAC4Q8WY50 150 aa1.8□□□□□ -2.12
VPS35-203ENST00000562420 AKAP6Q13023 2319 aa1.8□□□□□ -2.12
VPS35-203ENST00000562420 SPG11Q96JI7 2443 aa1.8□□□□□ -2.12
VPS35-203ENST00000562420 FLNCQ14315 2725 aa1.8□□□□□ -2.12
VPS35-203ENST00000562420 ASH1LQ9NR48 2969 aaKnown RBP1.8□□□□□ -2.12
VPS35-203ENST00000562420 HELZ2Q9BYK8 2649 aaKnown RBP1.79□□□□□ -2.12
VPS35-203ENST00000562420 LYNX1P0DP58 116 aa1.79□□□□□ -2.12
VPS35-203ENST00000562420 LELP1Q5T871 98 aa1.79□□□□□ -2.12
VPS35-203ENST00000562420 DOPEY2Q9Y3R5 2298 aa1.79□□□□□ -2.12
VPS35-203ENST00000562420 GCN1Q92616 2671 aaKnown RBP1.79□□□□□ -2.12
VPS35-203ENST00000562420 CSMD1Q96PZ7 3565 aa1.79□□□□□ -2.12
VPS35-203ENST00000562420 ANKRD17O75179 2603 aaKnown RBP1.78□□□□□ -2.12
VPS35-203ENST00000562420 C10orf99Q6UWK7 81 aa1.78□□□□□ -2.12
VPS35-203ENST00000562420 Q6ZSA8 131 aa1.78□□□□□ -2.12
VPS35-203ENST00000562420 NOP10Q9NPE3 64 aaKnown RBP1.78□□□□□ -2.12
VPS35-203ENST00000562420 UNC79Q9P2D8 2635 aa1.78□□□□□ -2.12
VPS35-203ENST00000562420 MYO9AB2RTY4 2548 aa1.77□□□□□ -2.13
VPS35-203ENST00000562420 H3BNG1 76 aa1.77□□□□□ -2.13
VPS35-203ENST00000562420 RPL37P61927 97 aaKnown RBP1.77□□□□□ -2.13
VPS35-203ENST00000562420 HIVEP2P31629 2446 aa1.77□□□□□ -2.13
VPS35-203ENST00000562420 DCHS2Q6V1P9 2916 aa1.77□□□□□ -2.13
VPS35-203ENST00000562420 HRNRQ86YZ3 2850 aaPredicted RBP1.77□□□□□ -2.13
VPS35-203ENST00000562420 ABCA12Q86UK0 2595 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 CCDC168Q8NDH2 2452 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 TACC2O95359 2948 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 H0YAA0 97 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 H1FX-AS1Q4G0G2 97 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 BRD3OSQ6XYD6 125 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 CENPEQ02224 2701 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 CSMD2Q7Z408 3487 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 LRBAP50851 2863 aa1.76□□□□□ -2.13
VPS35-203ENST00000562420 CSPG4Q6UVK1 2322 aa1.75□□□□□ -2.13
VPS35-203ENST00000562420 ZNF469Q96JG9 3925 aaPredicted RBP1.75□□□□□ -2.13
VPS35-203ENST00000562420 APCP25054 2843 aa1.75□□□□□ -2.13
VPS35-203ENST00000562420 AKAP9Q99996 3911 aa1.75□□□□□ -2.13
VPS35-203ENST00000562420 CRYBG3Q68DQ2 2970 aa1.74□□□□□ -2.13
VPS35-203ENST00000562420 KRTAP13-2Q52LG2 175 aa1.74□□□□□ -2.13
VPS35-203ENST00000562420 WNK1Q9H4A3 2382 aa1.74□□□□□ -2.13
VPS35-203ENST00000562420 CELSR2Q9HCU4 2923 aa1.73□□□□□ -2.13
VPS35-203ENST00000562420 FLNAP21333 2647 aaKnown RBP1.73□□□□□ -2.13
VPS35-203ENST00000562420 POLQO75417 2590 aa1.73□□□□□ -2.13
VPS35-203ENST00000562420 TLN2Q9Y4G6 2542 aa1.73□□□□□ -2.13
VPS35-203ENST00000562420 ITPR3Q14573 2671 aa1.73□□□□□ -2.13
VPS35-203ENST00000562420 HECTD1Q9ULT8 2610 aa1.73□□□□□ -2.13
VPS35-203ENST00000562420 FBN2P35556 2912 aa1.73□□□□□ -2.13
VPS35-203ENST00000562420 ABCA2Q9BZC7 2435 aa1.72□□□□□ -2.13
VPS35-203ENST00000562420 UTP20O75691 2785 aaKnown RBP1.72□□□□□ -2.13
VPS35-203ENST00000562420 K7EIL1 84 aa1.72□□□□□ -2.13
VPS35-203ENST00000562420 TPRXLQ17RH7 258 aa1.72□□□□□ -2.13
VPS35-203ENST00000562420 ITPR2Q14571 2701 aa1.72□□□□□ -2.13
VPS35-203ENST00000562420 MTORP42345 2549 aa1.72□□□□□ -2.13
VPS35-203ENST00000562420 MAP1AP78559 2803 aaPredicted RBP1.72□□□□□ -2.13
VPS35-203ENST00000562420 TENM4Q6N022 2769 aa1.71□□□□□ -2.14
VPS35-203ENST00000562420 DEFB130BP0DP73 79 aa1.71□□□□□ -2.14
VPS35-203ENST00000562420 DEFB130AP0DP74 79 aa1.71□□□□□ -2.14
VPS35-203ENST00000562420 TEX15Q9BXT5 2789 aa1.71□□□□□ -2.14
VPS35-203ENST00000562420 NSD1Q96L73 2696 aaPredicted RBP1.71□□□□□ -2.14
VPS35-203ENST00000562420 MXRA5Q9NR99 2828 aa1.71□□□□□ -2.14
VPS35-203ENST00000562420 ZANQ9Y493 2812 aa1.71□□□□□ -2.14
VPS35-203ENST00000562420 TEP1Q99973 2627 aaKnown RBP1.7□□□□□ -2.14
VPS35-203ENST00000562420 SONP18583 2426 aaKnown RBP1.7□□□□□ -2.14
VPS35-203ENST00000562420 C2CD3Q4AC94 2353 aa1.7□□□□□ -2.14
VPS35-203ENST00000562420 Q6ZRN7 208 aaPredicted RBP1.7□□□□□ -2.14
VPS35-203ENST00000562420 OTOGQ6ZRI0 2925 aa1.69□□□□□ -2.14
VPS35-203ENST00000562420 LINC01556Q5JQF7 62 aa1.69□□□□□ -2.14
VPS35-203ENST00000562420 KRTAP5-7Q6L8G8 165 aa1.69□□□□□ -2.14
VPS35-203ENST00000562420 CELSR1Q9NYQ6 3014 aa1.69□□□□□ -2.14
VPS35-203ENST00000562420 ANK3Q12955 4377 aaKnown RBP1.68□□□□□ -2.14
VPS35-203ENST00000562420 SPART-AS1P0CW21 52 aa1.68□□□□□ -2.14
VPS35-203ENST00000562420 UBE2DNLQ8IWF7 75 aa1.68□□□□□ -2.14
VPS35-203ENST00000562420 PDZD2O15018 2839 aa1.68□□□□□ -2.14
VPS35-203ENST00000562420 ACANP16112 2415 aa1.68□□□□□ -2.14
VPS35-203ENST00000562420 CUBNO60494 3623 aa1.67□□□□□ -2.14
VPS35-203ENST00000562420 DEFB136Q30KP8 78 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms