RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 HRES1P13985 223 aa8.73□□□□□ -1.01
TSPAN3-208ENST00000560514 MPLKIPQ8TAP9 179 aa8.73□□□□□ -1.01
TSPAN3-208ENST00000560514 KRTAP16-1A8MUX0 517 aa8.72□□□□□ -1.01
TSPAN3-208ENST00000560514 IGKV4-1P06312 121 aa8.72□□□□□ -1.01
TSPAN3-208ENST00000560514 PSMB2P49721 201 aa8.72□□□□□ -1.01
TSPAN3-208ENST00000560514 UBE2V1Q13404 147 aa8.71□□□□□ -1.02
TSPAN3-208ENST00000560514 SIGMAR1Q99720 223 aa8.71□□□□□ -1.02
TSPAN3-208ENST00000560514 LINC00472Q9H8W2 130 aa8.7□□□□□ -1.02
TSPAN3-208ENST00000560514 PYY3Q5JQD4 70 aa8.69□□□□□ -1.02
TSPAN3-208ENST00000560514 CCKP06307 115 aa8.67□□□□□ -1.02
TSPAN3-208ENST00000560514 NEBP20929 6669 aa8.66□□□□□ -1.02
TSPAN3-208ENST00000560514 TRACP01848 142 aa8.66□□□□□ -1.02
TSPAN3-208ENST00000560514 NOTCH2NLQ7Z3S9 236 aa8.65□□□□□ -1.02
TSPAN3-208ENST00000560514 UQCR10Q9UDW1 63 aa8.64□□□□□ -1.03
TSPAN3-208ENST00000560514 K7ERJ3 54 aa8.63□□□□□ -1.03
TSPAN3-208ENST00000560514 C21orf62-AS1Q17RA5 79 aa8.63□□□□□ -1.03
TSPAN3-208ENST00000560514 A8MWP4 228 aa8.62□□□□□ -1.03
TSPAN3-208ENST00000560514 RBM3P98179 157 aaKnown RBP8.62□□□□□ -1.03
TSPAN3-208ENST00000560514 DEFB116Q30KQ4 102 aa8.61□□□□□ -1.03
TSPAN3-208ENST00000560514 C8orf87E5RJ46 101 aa8.6□□□□□ -1.03
TSPAN3-208ENST00000560514 SCGB1C2P0DMR2 95 aa8.6□□□□□ -1.03
TSPAN3-208ENST00000560514 DSCR8Q96T75 97 aa8.6□□□□□ -1.03
TSPAN3-208ENST00000560514 IGHV6-1A0A0B4J1U7 121 aa8.59□□□□□ -1.03
TSPAN3-208ENST00000560514 A0A1B0GV72 72 aa8.59□□□□□ -1.03
TSPAN3-208ENST00000560514 Q8N9P0 234 aaPredicted RBP8.59□□□□□ -1.03
TSPAN3-208ENST00000560514 J3KT08 172 aa8.57□□□□□ -1.04
TSPAN3-208ENST00000560514 A0A1B0GVX0 72 aa8.56□□□□□ -1.04
TSPAN3-208ENST00000560514 BAALC-AS2P0C853 105 aa8.54□□□□□ -1.04
TSPAN3-208ENST00000560514 C9JAW5 83 aa8.53□□□□□ -1.04
TSPAN3-208ENST00000560514 VPS25Q9BRG1 176 aa8.53□□□□□ -1.04
TSPAN3-208ENST00000560514 A0A1B0GW54 56 aa8.52□□□□□ -1.05
TSPAN3-208ENST00000560514 KRTAP20-1Q3LI63 56 aa8.51□□□□□ -1.05
TSPAN3-208ENST00000560514 Q6ZQT0 140 aa8.51□□□□□ -1.05
TSPAN3-208ENST00000560514 NDUFB1O75438 58 aa8.48□□□□□ -1.05
TSPAN3-208ENST00000560514 ZCCHC13Q8WW36 166 aaKnown RBP8.48□□□□□ -1.05
TSPAN3-208ENST00000560514 JMJD7-PLA2G4BH0Y9G9 81 aa8.47□□□□□ -1.05
TSPAN3-208ENST00000560514 SPINK7P58062 85 aa8.47□□□□□ -1.05
TSPAN3-208ENST00000560514 MUC12Q9UKN1 5478 aa8.46□□□□□ -1.05
TSPAN3-208ENST00000560514 PDE6GP18545 87 aa8.46□□□□□ -1.06
TSPAN3-208ENST00000560514 ATXN8Q156A1 80 aa8.44□□□□□ -1.06
TSPAN3-208ENST00000560514 LOC110117498A0A087WWA1 95 aa8.43□□□□□ -1.06
TSPAN3-208ENST00000560514 M0R143 59 aa8.41□□□□□ -1.06
TSPAN3-208ENST00000560514 TMA7Q9Y2S6 64 aaKnown RBP8.41□□□□□ -1.06
TSPAN3-208ENST00000560514 WFDC13Q8IUB5 93 aa8.4□□□□□ -1.06
TSPAN3-208ENST00000560514 C8orf17Q9NRJ1 99 aa8.38□□□□□ -1.07
TSPAN3-208ENST00000560514 LCE3BQ5TA77 95 aa8.37□□□□□ -1.07
TSPAN3-208ENST00000560514 IGKV3D-7A0A0C4DH55 119 aa8.35□□□□□ -1.07
TSPAN3-208ENST00000560514 A6NN06 94 aa8.34□□□□□ -1.07
TSPAN3-208ENST00000560514 KRTAP4-12Q9BQ66 201 aa8.34□□□□□ -1.07
TSPAN3-208ENST00000560514 LYRM7Q5U5X0 104 aa8.33□□□□□ -1.08
TSPAN3-208ENST00000560514 Q6ZVQ6 151 aa8.32□□□□□ -1.08
TSPAN3-208ENST00000560514 PRR15Q8IV56 129 aa8.32□□□□□ -1.08
TSPAN3-208ENST00000560514 NREPQ16612 68 aa8.31□□□□□ -1.08
TSPAN3-208ENST00000560514 NAA38Q9BRA0 125 aaKnown RBP8.29□□□□□ -1.08
TSPAN3-208ENST00000560514 C14orf132Q9NPU4 83 aa8.29□□□□□ -1.08
TSPAN3-208ENST00000560514 TMEM254Q8TBM7 123 aa8.26□□□□□ -1.09
TSPAN3-208ENST00000560514 H1FX-AS1Q4G0G2 97 aa8.25□□□□□ -1.09
TSPAN3-208ENST00000560514 MRPL34Q9BQ48 92 aaKnown RBP8.24□□□□□ -1.09
TSPAN3-208ENST00000560514 KRTAP9-9Q9BYP9 154 aa8.24□□□□□ -1.09
TSPAN3-208ENST00000560514 KRTAP9-4Q9BYQ2 154 aa8.24□□□□□ -1.09
TSPAN3-208ENST00000560514 SMIM6P0DI80 62 aa8.23□□□□□ -1.09
TSPAN3-208ENST00000560514 MMP24-AS1A0A0U1RRL7 71 aa8.21□□□□□ -1.1
TSPAN3-208ENST00000560514 hDV103S1A0JD37 113 aa8.2□□□□□ -1.1
TSPAN3-208ENST00000560514 H3BT86 120 aa8.18□□□□□ -1.1
TSPAN3-208ENST00000560514 TSTD3H0UI37 97 aa8.17□□□□□ -1.1
TSPAN3-208ENST00000560514 KRTAP5-9P26371 169 aa8.16□□□□□ -1.1
TSPAN3-208ENST00000560514 KRTAP4-8A0A0G2JLE6 195 aa8.15□□□□□ -1.1
TSPAN3-208ENST00000560514 C9orf118A6NHY6 69 aa8.15□□□□□ -1.1
TSPAN3-208ENST00000560514 K7EQZ3 153 aa8.14□□□□□ -1.11
TSPAN3-208ENST00000560514 Q5VV11 94 aa8.14□□□□□ -1.11
TSPAN3-208ENST00000560514 BPY2O14599 106 aa8.13□□□□□ -1.11
TSPAN3-208ENST00000560514 NDUFS5O43920 106 aa8.13□□□□□ -1.11
TSPAN3-208ENST00000560514 KRTAP2-3P0C7H8 128 aa8.12□□□□□ -1.11
TSPAN3-208ENST00000560514 BATFQ16520 125 aa8.12□□□□□ -1.11
TSPAN3-208ENST00000560514 KRTAP2-4Q9BYR9 128 aa8.12□□□□□ -1.11
TSPAN3-208ENST00000560514 FAM236AA0A1B0GUQ0 79 aa8.11□□□□□ -1.11
TSPAN3-208ENST00000560514 FAM236BA0A1B0GV22 79 aa8.11□□□□□ -1.11
TSPAN3-208ENST00000560514 MDN1Q9NU22 5596 aa8.1□□□□□ -1.11
TSPAN3-208ENST00000560514 A0A1W2PPM0 123 aa8.1□□□□□ -1.11
TSPAN3-208ENST00000560514 KMT2DO14686 5537 aa8.09□□□□□ -1.11
TSPAN3-208ENST00000560514 MT1BP07438 61 aa8.09□□□□□ -1.11
TSPAN3-208ENST00000560514 TAX1BP3O14907 124 aa8.08□□□□□ -1.12
TSPAN3-208ENST00000560514 Q5W150 140 aa8.07□□□□□ -1.12
TSPAN3-208ENST00000560514 C7orf65Q6ZTY9 151 aa8.07□□□□□ -1.12
TSPAN3-208ENST00000560514 KRTAP10-5P60370 271 aa8.06□□□□□ -1.12
TSPAN3-208ENST00000560514 IGKV2D-30A0A075B6S6 120 aa8.04□□□□□ -1.12
TSPAN3-208ENST00000560514 IGKV2-30P06310 120 aa8.04□□□□□ -1.12
TSPAN3-208ENST00000560514 CASC2Q6XLA1 102 aa8.03□□□□□ -1.12
TSPAN3-208ENST00000560514 CXCL6P80162 114 aa8.01□□□□□ -1.13
TSPAN3-208ENST00000560514 KRTAP19-8Q3LI54 63 aa8□□□□□ -1.13
TSPAN3-208ENST00000560514 HCG22E2RYF7 251 aa7.99□□□□□ -1.13
TSPAN3-208ENST00000560514 C5orf47Q569G3 176 aa7.97□□□□□ -1.13
TSPAN3-208ENST00000560514 Q8N9L7 120 aa7.96□□□□□ -1.14
TSPAN3-208ENST00000560514 SPRR2GQ9BYE4 73 aa7.96□□□□□ -1.14
TSPAN3-208ENST00000560514 IMUPQ9GZP8 106 aa7.96□□□□□ -1.14
TSPAN3-208ENST00000560514 SPCS1Q9Y6A9 102 aa7.96□□□□□ -1.14
TSPAN3-208ENST00000560514 C4orf26Q17RF5 130 aa7.93□□□□□ -1.14
TSPAN3-208ENST00000560514 UBL5Q9BZL1 73 aa7.93□□□□□ -1.14
TSPAN3-208ENST00000560514 LOC105371267A0A1B0GV96 52 aa7.92□□□□□ -1.14
TSPAN3-208ENST00000560514 SPRR2EP22531 72 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 313.8 ms