RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 SCGB1A1P11684 91 aa4.67□□□□□ -1.66
HDDC3-204ENST00000559834 FAM218AQ96MZ4 157 aa4.67□□□□□ -1.66
HDDC3-204ENST00000559834 GHRHP01286 108 aa4.65□□□□□ -1.67
HDDC3-204ENST00000559834 MT-ATP8P03928 68 aa4.65□□□□□ -1.67
HDDC3-204ENST00000559834 NDUFV3P56181 108 aaKnown RBP4.65□□□□□ -1.67
HDDC3-204ENST00000559834 A0A087WSZ3 146 aa4.64□□□□□ -1.67
HDDC3-204ENST00000559834 FAM236DA0A1B0GTK5 79 aa4.64□□□□□ -1.67
HDDC3-204ENST00000559834 H0YGX0 51 aa4.64□□□□□ -1.67
HDDC3-204ENST00000559834 FAM236CP0DP71 79 aa4.64□□□□□ -1.67
HDDC3-204ENST00000559834 DNAL4O96015 105 aa4.62□□□□□ -1.67
HDDC3-204ENST00000559834 BAALC-AS2P0C853 105 aa4.62□□□□□ -1.67
HDDC3-204ENST00000559834 LINC00313P59037 77 aa4.62□□□□□ -1.67
HDDC3-204ENST00000559834 RBM12B-AS1Q9P1G2 102 aa4.62□□□□□ -1.67
HDDC3-204ENST00000559834 FAM240AA0A1B0GVK7 77 aa4.61□□□□□ -1.67
HDDC3-204ENST00000559834 DSCR10P59022 87 aa4.61□□□□□ -1.67
HDDC3-204ENST00000559834 MT2AP02795 61 aa4.6□□□□□ -1.67
HDDC3-204ENST00000559834 A0A1B0GX51 115 aa4.58□□□□□ -1.68
HDDC3-204ENST00000559834 IGKV4-1P06312 121 aa4.58□□□□□ -1.68
HDDC3-204ENST00000559834 KRTAP10-10P60014 251 aa4.58□□□□□ -1.68
HDDC3-204ENST00000559834 ORMDL1Q9P0S3 153 aa4.58□□□□□ -1.68
HDDC3-204ENST00000559834 KRTAP16-1A8MUX0 517 aa4.57□□□□□ -1.68
HDDC3-204ENST00000559834 ACYP1P07311 99 aa4.57□□□□□ -1.68
HDDC3-204ENST00000559834 KRTAP19-1Q8IUB9 90 aa4.57□□□□□ -1.68
HDDC3-204ENST00000559834 LINC00846Q9NV44 126 aa4.57□□□□□ -1.68
HDDC3-204ENST00000559834 USH2AO75445 5202 aa4.56□□□□□ -1.68
HDDC3-204ENST00000559834 A0A1B0GV72 72 aa4.56□□□□□ -1.68
HDDC3-204ENST00000559834 A0A1W2PNM2 257 aa4.56□□□□□ -1.68
HDDC3-204ENST00000559834 LCE2BO14633 110 aa4.56□□□□□ -1.68
HDDC3-204ENST00000559834 MT1FP04733 61 aa4.56□□□□□ -1.68
HDDC3-204ENST00000559834 MPLKIPQ8TAP9 179 aa4.56□□□□□ -1.68
HDDC3-204ENST00000559834 KRTAP9-3Q9BYQ3 159 aa4.56□□□□□ -1.68
HDDC3-204ENST00000559834 C14orf132Q9NPU4 83 aa4.56□□□□□ -1.68
HDDC3-204ENST00000559834 TRBV7-4A0A0J9YYF1 115 aa4.55□□□□□ -1.68
HDDC3-204ENST00000559834 H3BQ85 93 aa4.55□□□□□ -1.68
HDDC3-204ENST00000559834 HRES1P13985 223 aa4.54□□□□□ -1.68
HDDC3-204ENST00000559834 SSPOA2VEC9 5147 aa4.54□□□□□ -1.68
HDDC3-204ENST00000559834 NOTCH2NLQ7Z3S9 236 aa4.53□□□□□ -1.68
HDDC3-204ENST00000559834 IGHV6-1A0A0B4J1U7 121 aa4.52□□□□□ -1.69
HDDC3-204ENST00000559834 LINC00643Q86TS7 51 aa4.52□□□□□ -1.69
HDDC3-204ENST00000559834 ANAPC13Q9BS18 74 aa4.52□□□□□ -1.69
HDDC3-204ENST00000559834 FCGBPQ9Y6R7 5405 aaPredicted RBP4.51□□□□□ -1.69
HDDC3-204ENST00000559834 JMJD7-PLA2G4BH0Y9G9 81 aa4.51□□□□□ -1.69
HDDC3-204ENST00000559834 TMEM256-PLSCR3K7ERE1 68 aa4.51□□□□□ -1.69
HDDC3-204ENST00000559834 DEFB116Q30KQ4 102 aa4.51□□□□□ -1.69
HDDC3-204ENST00000559834 LINC00472Q9H8W2 130 aa4.51□□□□□ -1.69
HDDC3-204ENST00000559834 C8orf87E5RJ46 101 aa4.5□□□□□ -1.69
HDDC3-204ENST00000559834 CCKP06307 115 aa4.49□□□□□ -1.69
HDDC3-204ENST00000559834 IMUPQ9GZP8 106 aa4.49□□□□□ -1.69
HDDC3-204ENST00000559834 FAM236AA0A1B0GUQ0 79 aa4.48□□□□□ -1.69
HDDC3-204ENST00000559834 FAM236BA0A1B0GV22 79 aa4.48□□□□□ -1.69
HDDC3-204ENST00000559834 IGKV3D-7A0A0C4DH55 119 aa4.47□□□□□ -1.69
HDDC3-204ENST00000559834 A0A1B0GVX0 72 aa4.47□□□□□ -1.69
HDDC3-204ENST00000559834 SPINK7P58062 85 aa4.47□□□□□ -1.69
HDDC3-204ENST00000559834 Q6ZQT0 140 aa4.46□□□□□ -1.7
HDDC3-204ENST00000559834 ZCCHC13Q8WW36 166 aaKnown RBP4.46□□□□□ -1.7
HDDC3-204ENST00000559834 LOC110117498A0A087WWA1 95 aa4.45□□□□□ -1.7
HDDC3-204ENST00000559834 A8MWP4 228 aa4.45□□□□□ -1.7
HDDC3-204ENST00000559834 CCDC179H3BU77 68 aa4.45□□□□□ -1.7
HDDC3-204ENST00000559834 RBM3P98179 157 aaKnown RBP4.45□□□□□ -1.7
HDDC3-204ENST00000559834 KRTAP19-6Q3LI70 58 aa4.45□□□□□ -1.7
HDDC3-204ENST00000559834 J3KT08 172 aa4.44□□□□□ -1.7
HDDC3-204ENST00000559834 MACF1Q9UPN3 7388 aaKnown RBP4.43□□□□□ -1.7
HDDC3-204ENST00000559834 NDUFB1O75438 58 aa4.43□□□□□ -1.7
HDDC3-204ENST00000559834 HIST1H4AP62805 103 aaKnown RBP4.43□□□□□ -1.7
HDDC3-204ENST00000559834 ATP5EP2Q5VTU8 51 aa4.43□□□□□ -1.7
HDDC3-204ENST00000559834 DSCR8Q96T75 97 aa4.43□□□□□ -1.7
HDDC3-204ENST00000559834 SYNE2Q8WXH0 6885 aaKnown RBP4.42□□□□□ -1.7
HDDC3-204ENST00000559834 A0A087WVE0 104 aa4.42□□□□□ -1.7
HDDC3-204ENST00000559834 PDE6GP18545 87 aa4.42□□□□□ -1.7
HDDC3-204ENST00000559834 UBL5Q9BZL1 73 aa4.42□□□□□ -1.7
HDDC3-204ENST00000559834 ATOX1O00244 68 aa4.41□□□□□ -1.7
HDDC3-204ENST00000559834 Q6ZVQ6 151 aa4.4□□□□□ -1.71
HDDC3-204ENST00000559834 Q8N9P0 234 aaPredicted RBP4.4□□□□□ -1.71
HDDC3-204ENST00000559834 WFDC13Q8IUB5 93 aa4.39□□□□□ -1.71
HDDC3-204ENST00000559834 COX7CP15954 63 aa4.37□□□□□ -1.71
HDDC3-204ENST00000559834 UQCRQO14949 82 aa4.36□□□□□ -1.71
HDDC3-204ENST00000559834 KRTAP6-3Q3LI67 103 aa4.36□□□□□ -1.71
HDDC3-204ENST00000559834 C8orf17Q9NRJ1 99 aa4.36□□□□□ -1.71
HDDC3-204ENST00000559834 A0A1B0GW54 56 aa4.35□□□□□ -1.71
HDDC3-204ENST00000559834 CXCL6P80162 114 aa4.34□□□□□ -1.71
HDDC3-204ENST00000559834 H1FX-AS1Q4G0G2 97 aa4.34□□□□□ -1.71
HDDC3-204ENST00000559834 SERP2Q8N6R1 65 aa4.34□□□□□ -1.71
HDDC3-204ENST00000559834 NREPQ16612 68 aa4.3□□□□□ -1.72
HDDC3-204ENST00000559834 PRR15Q8IV56 129 aa4.3□□□□□ -1.72
HDDC3-204ENST00000559834 BPY2O14599 106 aa4.29□□□□□ -1.72
HDDC3-204ENST00000559834 MRPL34Q9BQ48 92 aaKnown RBP4.29□□□□□ -1.72
HDDC3-204ENST00000559834 CYSTM1Q9H1C7 97 aa4.29□□□□□ -1.72
HDDC3-204ENST00000559834 TRAV7A0A075B6U4 112 aa4.28□□□□□ -1.72
HDDC3-204ENST00000559834 Q8N9L7 120 aa4.28□□□□□ -1.72
HDDC3-204ENST00000559834 TMEM254Q8TBM7 123 aa4.28□□□□□ -1.72
HDDC3-204ENST00000559834 NDUFS5O43920 106 aa4.27□□□□□ -1.73
HDDC3-204ENST00000559834 SMIM20Q8N5G0 67 aa4.27□□□□□ -1.73
HDDC3-204ENST00000559834 hDV103S1A0JD37 113 aa4.25□□□□□ -1.73
HDDC3-204ENST00000559834 TMEM258P61165 79 aa4.25□□□□□ -1.73
HDDC3-204ENST00000559834 C20orf197Q8N268 126 aa4.25□□□□□ -1.73
HDDC3-204ENST00000559834 IGKV2D-30A0A075B6S6 120 aa4.24□□□□□ -1.73
HDDC3-204ENST00000559834 MMP24-AS1A0A0U1RRL7 71 aa4.24□□□□□ -1.73
HDDC3-204ENST00000559834 IGKV2-30P06310 120 aa4.24□□□□□ -1.73
HDDC3-204ENST00000559834 C7orf65Q6ZTY9 151 aa4.23□□□□□ -1.73
HDDC3-204ENST00000559834 K7EQZ3 153 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms