RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 KMT2AQ03164 3969 aa6.69□□□□□ -1.34
USP3-206ENST00000558157 LINC01554Q52M75 96 aa6.69□□□□□ -1.34
USP3-206ENST00000558157 IGKV2-24A0A0C4DH68 120 aa6.68□□□□□ -1.34
USP3-206ENST00000558157 H0Y9J4 135 aa6.68□□□□□ -1.34
USP3-206ENST00000558157 DNAH2Q9P225 4427 aa6.68□□□□□ -1.34
USP3-206ENST00000558157 Q6ZRN7 208 aaPredicted RBP6.66□□□□□ -1.34
USP3-206ENST00000558157 PRLHP81277 87 aa6.64□□□□□ -1.35
USP3-206ENST00000558157 SACSQ9NZJ4 4579 aa6.62□□□□□ -1.35
USP3-206ENST00000558157 HYDINQ4G0P3 5121 aa6.61□□□□□ -1.35
USP3-206ENST00000558157 DNAH17Q9UFH2 4485 aa6.61□□□□□ -1.35
USP3-206ENST00000558157 PRAC1Q96KF2 57 aa6.61□□□□□ -1.35
USP3-206ENST00000558157 C8orf17Q9NRJ1 99 aa6.61□□□□□ -1.35
USP3-206ENST00000558157 H3BS24 57 aa6.6□□□□□ -1.35
USP3-206ENST00000558157 FRAS1Q86XX4 4008 aa6.6□□□□□ -1.35
USP3-206ENST00000558157 RTL8CO15255 209 aa6.6□□□□□ -1.35
USP3-206ENST00000558157 C1orf134Q5TEV5 83 aa6.6□□□□□ -1.35
USP3-206ENST00000558157 C14orf177Q52M58 125 aa6.59□□□□□ -1.35
USP3-206ENST00000558157 SPATA8Q6RVD6 105 aa6.58□□□□□ -1.36
USP3-206ENST00000558157 ACYP2P14621 99 aa6.58□□□□□ -1.36
USP3-206ENST00000558157 Q96NJ1 140 aa6.57□□□□□ -1.36
USP3-206ENST00000558157 A0A087WTM6 91 aa6.57□□□□□ -1.36
USP3-206ENST00000558157 MRPL34Q9BQ48 92 aaKnown RBP6.56□□□□□ -1.36
USP3-206ENST00000558157 A0A1B0GVX0 72 aa6.55□□□□□ -1.36
USP3-206ENST00000558157 PRR26Q8N8Z3 221 aa6.55□□□□□ -1.36
USP3-206ENST00000558157 HECTD4Q9Y4D8 3996 aa6.54□□□□□ -1.36
USP3-206ENST00000558157 ADM2Q7Z4H4 148 aa6.54□□□□□ -1.36
USP3-206ENST00000558157 FAT2Q9NYQ8 4349 aa6.53□□□□□ -1.36
USP3-206ENST00000558157 DNAH11Q96DT5 4516 aa6.53□□□□□ -1.36
USP3-206ENST00000558157 A0A096LNI7 61 aa6.52□□□□□ -1.36
USP3-206ENST00000558157 RETNLBQ9BQ08 111 aa6.52□□□□□ -1.37
USP3-206ENST00000558157 A0A1B0GU69 56 aa6.51□□□□□ -1.37
USP3-206ENST00000558157 CDK2AP2O75956 126 aa6.51□□□□□ -1.37
USP3-206ENST00000558157 RYR2Q92736 4967 aa6.5□□□□□ -1.37
USP3-206ENST00000558157 DMAC1Q96GE9 116 aa6.5□□□□□ -1.37
USP3-206ENST00000558157 IGHV6-1A0A0B4J1U7 121 aa6.49□□□□□ -1.37
USP3-206ENST00000558157 UQCR11O14957 56 aa6.49□□□□□ -1.37
USP3-206ENST00000558157 MIR22HGQ0VDD5 57 aa6.48□□□□□ -1.37
USP3-206ENST00000558157 KMT2CQ8NEZ4 4911 aaKnown RBP6.48□□□□□ -1.37
USP3-206ENST00000558157 CHTF8P0CG12 524 aa6.48□□□□□ -1.37
USP3-206ENST00000558157 DNAH5Q8TE73 4624 aa6.48□□□□□ -1.37
USP3-206ENST00000558157 KRTAP13-3Q3SY46 172 aa6.47□□□□□ -1.37
USP3-206ENST00000558157 PKD1P98161 4303 aa6.47□□□□□ -1.37
USP3-206ENST00000558157 IGLV5-52A0A0A0MRZ9 124 aa6.47□□□□□ -1.37
USP3-206ENST00000558157 KRTAP10-2P60368 255 aa6.45□□□□□ -1.38
USP3-206ENST00000558157 PANO1I0J062 215 aa6.45□□□□□ -1.38
USP3-206ENST00000558157 KRTAP13-1Q8IUC0 172 aa6.45□□□□□ -1.38
USP3-206ENST00000558157 KRTAP11-1Q8IUC1 163 aa6.43□□□□□ -1.38
USP3-206ENST00000558157 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.43□□□□□ -1.38
USP3-206ENST00000558157 LINC00483Q53H64 154 aa6.42□□□□□ -1.38
USP3-206ENST00000558157 CSAG1Q6PB30 78 aa6.42□□□□□ -1.38
USP3-206ENST00000558157 SPACA4Q8TDM5 124 aa6.42□□□□□ -1.38
USP3-206ENST00000558157 DNAH8Q96JB1 4490 aa6.42□□□□□ -1.38
USP3-206ENST00000558157 Q5W150 140 aa6.4□□□□□ -1.39
USP3-206ENST00000558157 IGLV9-49A0A0B4J1Y8 123 aa6.39□□□□□ -1.39
USP3-206ENST00000558157 ZNF706Q9Y5V0 76 aaPredicted RBP6.39□□□□□ -1.39
USP3-206ENST00000558157 RYR3Q15413 4870 aa6.37□□□□□ -1.39
USP3-206ENST00000558157 NOTCH2NLQ7Z3S9 236 aa6.37□□□□□ -1.39
USP3-206ENST00000558157 PKHD1P08F94 4074 aa6.37□□□□□ -1.39
USP3-206ENST00000558157 KRTAP10-1P60331 282 aa6.36□□□□□ -1.39
USP3-206ENST00000558157 A0A1B0GVY2 172 aa6.35□□□□□ -1.39
USP3-206ENST00000558157 ZNF861PO60384 105 aa6.35□□□□□ -1.39
USP3-206ENST00000558157 FAM229AH3BQW9 127 aa6.34□□□□□ -1.39
USP3-206ENST00000558157 DYNC1H1Q14204 4646 aaKnown RBP6.33□□□□□ -1.4
USP3-206ENST00000558157 LRP1BQ9NZR2 4599 aa6.33□□□□□ -1.4
USP3-206ENST00000558157 Q6ZSA8 131 aa6.32□□□□□ -1.4
USP3-206ENST00000558157 SRRM2Q9UQ35 2752 aaKnown RBP6.31□□□□□ -1.4
USP3-206ENST00000558157 IGLV7-43P04211 117 aa6.31□□□□□ -1.4
USP3-206ENST00000558157 IGKV2-30P06310 120 aa6.3□□□□□ -1.4
USP3-206ENST00000558157 CIRBP-AS1Q8TBR5 109 aa6.3□□□□□ -1.4
USP3-206ENST00000558157 PSORS1C2Q9UIG4 136 aa6.26□□□□□ -1.41
USP3-206ENST00000558157 APOBP04114 4563 aaKnown RBP6.26□□□□□ -1.41
USP3-206ENST00000558157 KRTAP25-1Q3LHN0 102 aa6.26□□□□□ -1.41
USP3-206ENST00000558157 ROMO1P60602 79 aa6.25□□□□□ -1.41
USP3-206ENST00000558157 SPINK6Q6UWN8 80 aa6.24□□□□□ -1.41
USP3-206ENST00000558157 A8MUU9 505 aa6.21□□□□□ -1.41
USP3-206ENST00000558157 IGKV2D-30A0A075B6S6 120 aa6.2□□□□□ -1.42
USP3-206ENST00000558157 VPS13BQ7Z7G8 4022 aa6.18□□□□□ -1.42
USP3-206ENST00000558157 SSBP3-AS1Q7Z2R9 100 aa6.17□□□□□ -1.42
USP3-206ENST00000558157 SMR3BP02814 79 aaPredicted RBP6.16□□□□□ -1.42
USP3-206ENST00000558157 EPPK1P58107 5090 aaKnown RBP6.14□□□□□ -1.43
USP3-206ENST00000558157 FAT1Q14517 4588 aa6.14□□□□□ -1.43
USP3-206ENST00000558157 LINC00304Q8N9R0 145 aa6.14□□□□□ -1.43
USP3-206ENST00000558157 ANAPC11Q9NYG5 84 aa6.13□□□□□ -1.43
USP3-206ENST00000558157 HSPG2P98160 4391 aa6.13□□□□□ -1.43
USP3-206ENST00000558157 KRTAP16-1A8MUX0 517 aa6.11□□□□□ -1.43
USP3-206ENST00000558157 H0YAA0 97 aa6.11□□□□□ -1.43
USP3-206ENST00000558157 RYR1P21817 5038 aa6.09□□□□□ -1.43
USP3-206ENST00000558157 KRTAP10-4P60372 401 aaPredicted RBP6.08□□□□□ -1.44
USP3-206ENST00000558157 PKHD1L1Q86WI1 4243 aa6.07□□□□□ -1.44
USP3-206ENST00000558157 KIAA1109Q2LD37 5005 aa6.04□□□□□ -1.44
USP3-206ENST00000558157 A0A1B0GU33 70 aa6.04□□□□□ -1.44
USP3-206ENST00000558157 K7ERS5 55 aa6.04□□□□□ -1.44
USP3-206ENST00000558157 SPINK1P00995 79 aa6.03□□□□□ -1.44
USP3-206ENST00000558157 KRTAP1-4P0C5Y4 121 aa6.03□□□□□ -1.44
USP3-206ENST00000558157 Q5VSD8 79 aa6.03□□□□□ -1.44
USP3-206ENST00000558157 KRTAP17-1Q9BYP8 105 aa6.01□□□□□ -1.45
USP3-206ENST00000558157 P0C880 135 aa6.01□□□□□ -1.45
USP3-206ENST00000558157 H1FX-AS1Q4G0G2 97 aa6.01□□□□□ -1.45
USP3-206ENST00000558157 KRTAP13-2Q52LG2 175 aa5.99□□□□□ -1.45
USP3-206ENST00000558157 Q8N1X5 172 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms