RNA–Protein interactions for RNA: ENST00000557538.5

HIF1A-212, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-212ENST00000557538 LELP1Q5T871 98 aa0.69□□□□□ -2.3
HIF1A-212ENST00000557538 PRR14LQ5THK1 2151 aa0.69□□□□□ -2.3
HIF1A-212ENST00000557538 TMEM167AQ8TBQ9 72 aa0.69□□□□□ -2.3
HIF1A-212ENST00000557538 PRRC2CQ9Y520 2896 aaKnown RBP0.68□□□□□ -2.3
HIF1A-212ENST00000557538 UNC13CQ8NB66 2214 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 FLGP20930 4061 aaPredicted RBP0.68□□□□□ -2.3
HIF1A-212ENST00000557538 KRTAP12-1P59990 96 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 CLPSL2Q6UWE3 100 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 PKHD1P08F94 4074 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 SDK1Q7Z5N4 2213 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 PRB3Q04118 309 aaPredicted RBP0.68□□□□□ -2.3
HIF1A-212ENST00000557538 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 ABCA4P78363 2273 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 SPG11Q96JI7 2443 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 DIDO1Q9BTC0 2240 aaKnown RBP0.68□□□□□ -2.3
HIF1A-212ENST00000557538 SEC16AO15027 2179 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 K7EIL1 84 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 COX6B2Q6YFQ2 88 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 TP53AIP1Q9HCN2 124 aa0.68□□□□□ -2.3
HIF1A-212ENST00000557538 SPAG17Q6Q759 2223 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 DSPP15924 2871 aaKnown RBP0.67□□□□□ -2.3
HIF1A-212ENST00000557538 ITPR3Q14573 2671 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 AKAP13Q12802 2813 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 DNAH10Q8IVF4 4471 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 MRPL33O75394 65 aaKnown RBP0.67□□□□□ -2.3
HIF1A-212ENST00000557538 ACYP2P14621 99 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 RPL39P5Q59GN2 51 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 C10orf95Q9H7T3 257 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 CRIPTQ9P021 101 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 KAAG1Q9UBP8 84 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 WDR87Q6ZQQ6 2873 aa0.67□□□□□ -2.3
HIF1A-212ENST00000557538 PKD1P98161 4303 aa0.66□□□□□ -2.3
HIF1A-212ENST00000557538 CNOT1A5YKK6 2376 aaKnown RBP0.66□□□□□ -2.3
HIF1A-212ENST00000557538 A8MTW9 85 aa0.66□□□□□ -2.3
HIF1A-212ENST00000557538 PCOTHQ58A44 107 aa0.66□□□□□ -2.3
HIF1A-212ENST00000557538 USF3Q68DE3 2245 aa0.66□□□□□ -2.3
HIF1A-212ENST00000557538 FAT2Q9NYQ8 4349 aa0.66□□□□□ -2.3
HIF1A-212ENST00000557538 KRTAP12-3P60328 96 aa0.66□□□□□ -2.3
HIF1A-212ENST00000557538 SSBP3-AS1Q7Z2R9 100 aa0.66□□□□□ -2.3
HIF1A-212ENST00000557538 MRPL34Q9BQ48 92 aaKnown RBP0.66□□□□□ -2.3
HIF1A-212ENST00000557538 SYNE2Q8WXH0 6885 aaKnown RBP0.66□□□□□ -2.3
HIF1A-212ENST00000557538 USP9YO00507 2555 aaPredicted RBP0.66□□□□□ -2.3
HIF1A-212ENST00000557538 RPL37P61927 97 aaKnown RBP0.65□□□□□ -2.3
HIF1A-212ENST00000557538 COX14Q96I36 57 aa0.65□□□□□ -2.3
HIF1A-212ENST00000557538 C6orf48Q9UBA6 75 aa0.65□□□□□ -2.3
HIF1A-212ENST00000557538 CHD9Q3L8U1 2897 aa0.65□□□□□ -2.3
HIF1A-212ENST00000557538 NF1P21359 2839 aa0.65□□□□□ -2.3
HIF1A-212ENST00000557538 GVINP1Q7Z2Y8 2422 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 SPTY2D1-AS1A0A0U1RR47 76 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 SPRR1AP35321 89 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 MEGF8Q7Z7M0 2845 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 ATRQ13535 2644 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 DNAH5Q8TE73 4624 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 PTPRQQ9UMZ3 2332 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 RYR3Q15413 4870 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 RYR1P21817 5038 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 H1FX-AS1Q4G0G2 97 aa0.65□□□□□ -2.31
HIF1A-212ENST00000557538 CACNA1HO95180 2353 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 DNAH9Q9NYC9 4486 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 POLQO75417 2590 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 J3QKU1 62 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 DEFB130BP0DP73 79 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 DEFB130AP0DP74 79 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 MED13LQ71F56 2210 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 DEFB103AP81534 67 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 FBN2P35556 2912 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 ADGRG4Q8IZF6 3080 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 ASXL3Q9C0F0 2248 aa0.64□□□□□ -2.31
HIF1A-212ENST00000557538 FLNAP21333 2647 aaKnown RBP0.64□□□□□ -2.31
HIF1A-212ENST00000557538 KRTAP13-4Q3LI77 160 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 UNQ6190/PRO20217Q6UXQ8 127 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 SPTAN1Q13813 2472 aaKnown RBP0.63□□□□□ -2.31
HIF1A-212ENST00000557538 ACANP16112 2415 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 LRP1Q07954 4544 aaKnown RBP0.63□□□□□ -2.31
HIF1A-212ENST00000557538 NSD1Q96L73 2696 aaPredicted RBP0.63□□□□□ -2.31
HIF1A-212ENST00000557538 MINOS1Q5TGZ0 78 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 DEFB104AQ8WTQ1 72 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 DCHS2Q6V1P9 2916 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 TNXBP22105 4242 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 HYDINQ4G0P3 5121 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 IGSF10Q6WRI0 2623 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 DEFB108AA8MXU0 73 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 WFDC10BQ8IUB3 73 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 WFDC13Q8IUB5 93 aa0.63□□□□□ -2.31
HIF1A-212ENST00000557538 KMT2CQ8NEZ4 4911 aaKnown RBP0.63□□□□□ -2.31
HIF1A-212ENST00000557538 CEP290O15078 2479 aa0.62□□□□□ -2.31
HIF1A-212ENST00000557538 DEFB131AP59861 70 aa0.62□□□□□ -2.31
HIF1A-212ENST00000557538 DEFB119Q8N690 84 aa0.62□□□□□ -2.31
HIF1A-212ENST00000557538 MYO9AB2RTY4 2548 aa0.62□□□□□ -2.31
HIF1A-212ENST00000557538 FAT3Q8TDW7 4589 aa0.62□□□□□ -2.31
HIF1A-212ENST00000557538 APOBP04114 4563 aaKnown RBP0.62□□□□□ -2.31
HIF1A-212ENST00000557538 RYR2Q92736 4967 aa0.62□□□□□ -2.31
HIF1A-212ENST00000557538 TPRP12270 2363 aaKnown RBP0.62□□□□□ -2.31
HIF1A-212ENST00000557538 DEFB109BQ30KR1 87 aa0.62□□□□□ -2.31
HIF1A-212ENST00000557538 RIF1Q5UIP0 2472 aaKnown RBP0.62□□□□□ -2.31
HIF1A-212ENST00000557538 BRWD1Q9NSI6 2320 aa0.62□□□□□ -2.31
HIF1A-212ENST00000557538 CEP250Q9BV73 2442 aa0.61□□□□□ -2.31
HIF1A-212ENST00000557538 SPRR1BP22528 89 aa0.61□□□□□ -2.31
HIF1A-212ENST00000557538 FAM186AA6NE01 2351 aa0.61□□□□□ -2.31
HIF1A-212ENST00000557538 GCN1Q92616 2671 aaKnown RBP0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms