RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 KRTAP13-3Q3SY46 172 aa9.62□□□□□ -0.87
SHMT2-231ENST00000557433 A0A087X002 238 aa9.61□□□□□ -0.87
SHMT2-231ENST00000557433 NOTCH2NLQ7Z3S9 236 aa9.61□□□□□ -0.87
SHMT2-231ENST00000557433 SRRM2Q9UQ35 2752 aaKnown RBP9.61□□□□□ -0.87
SHMT2-231ENST00000557433 STAB2Q8WWQ8 2551 aa9.6□□□□□ -0.87
SHMT2-231ENST00000557433 A6NN06 94 aa9.6□□□□□ -0.87
SHMT2-231ENST00000557433 SSBP3-AS1Q7Z2R9 100 aa9.59□□□□□ -0.87
SHMT2-231ENST00000557433 ACYP2P14621 99 aa9.58□□□□□ -0.88
SHMT2-231ENST00000557433 TENM2Q9NT68 2774 aa9.58□□□□□ -0.88
SHMT2-231ENST00000557433 IGLV7-43P04211 117 aa9.56□□□□□ -0.88
SHMT2-231ENST00000557433 ANAPC11Q9NYG5 84 aa9.56□□□□□ -0.88
SHMT2-231ENST00000557433 LYSTQ99698 3801 aa9.56□□□□□ -0.88
SHMT2-231ENST00000557433 Q5W150 140 aa9.55□□□□□ -0.88
SHMT2-231ENST00000557433 DNHD1Q96M86 4753 aa9.55□□□□□ -0.88
SHMT2-231ENST00000557433 SPINK6Q6UWN8 80 aa9.53□□□□□ -0.88
SHMT2-231ENST00000557433 FAM229AH3BQW9 127 aa9.52□□□□□ -0.89
SHMT2-231ENST00000557433 DMAC1Q96GE9 116 aa9.51□□□□□ -0.89
SHMT2-231ENST00000557433 SPINK7P58062 85 aa9.5□□□□□ -0.89
SHMT2-231ENST00000557433 CIRBP-AS1Q8TBR5 109 aa9.5□□□□□ -0.89
SHMT2-231ENST00000557433 MGAM2Q2M2H8 2515 aa9.49□□□□□ -0.89
SHMT2-231ENST00000557433 C7orf65Q6ZTY9 151 aa9.48□□□□□ -0.89
SHMT2-231ENST00000557433 LINC00313P59037 77 aa9.47□□□□□ -0.89
SHMT2-231ENST00000557433 PRR26Q8N8Z3 221 aa9.47□□□□□ -0.89
SHMT2-231ENST00000557433 COL7A1Q02388 2944 aa9.43□□□□□ -0.9
SHMT2-231ENST00000557433 C1orf134Q5TEV5 83 aa9.43□□□□□ -0.9
SHMT2-231ENST00000557433 IGKV2-30P06310 120 aa9.42□□□□□ -0.9
SHMT2-231ENST00000557433 RBM12B-AS1Q9P1G2 102 aa9.41□□□□□ -0.9
SHMT2-231ENST00000557433 VPS13DQ5THJ4 4388 aa9.41□□□□□ -0.9
SHMT2-231ENST00000557433 PLECQ15149 4684 aaKnown RBP9.4□□□□□ -0.9
SHMT2-231ENST00000557433 DNAH7Q8WXX0 4024 aa9.39□□□□□ -0.91
SHMT2-231ENST00000557433 FBN3Q75N90 2809 aa9.38□□□□□ -0.91
SHMT2-231ENST00000557433 DNAH8Q96JB1 4490 aa9.36□□□□□ -0.91
SHMT2-231ENST00000557433 CSMD3Q7Z407 3707 aa9.36□□□□□ -0.91
SHMT2-231ENST00000557433 A0A1B0GU69 56 aa9.35□□□□□ -0.91
SHMT2-231ENST00000557433 DNAH17Q9UFH2 4485 aa9.34□□□□□ -0.91
SHMT2-231ENST00000557433 KRTAP16-1A8MUX0 517 aa9.31□□□□□ -0.92
SHMT2-231ENST00000557433 HECTD4Q9Y4D8 3996 aa9.31□□□□□ -0.92
SHMT2-231ENST00000557433 ALMS1Q8TCU4 4167 aa9.31□□□□□ -0.92
SHMT2-231ENST00000557433 SPATA8Q6RVD6 105 aa9.31□□□□□ -0.92
SHMT2-231ENST00000557433 KRTAP13-2Q52LG2 175 aa9.29□□□□□ -0.92
SHMT2-231ENST00000557433 UQCR11O14957 56 aa9.25□□□□□ -0.93
SHMT2-231ENST00000557433 PRKDCP78527 4128 aaKnown RBP9.24□□□□□ -0.93
SHMT2-231ENST00000557433 RETNLBQ9BQ08 111 aa9.23□□□□□ -0.93
SHMT2-231ENST00000557433 PLA2G1BP04054 148 aaKnown RBP9.23□□□□□ -0.93
SHMT2-231ENST00000557433 Q6ZSA8 131 aa9.23□□□□□ -0.93
SHMT2-231ENST00000557433 STARD9Q9P2P6 4700 aa9.21□□□□□ -0.93
SHMT2-231ENST00000557433 IGKV2D-30A0A075B6S6 120 aa9.21□□□□□ -0.93
SHMT2-231ENST00000557433 MIR22HGQ0VDD5 57 aa9.21□□□□□ -0.93
SHMT2-231ENST00000557433 FRAS1Q86XX4 4008 aa9.21□□□□□ -0.94
SHMT2-231ENST00000557433 LY6G6CO95867 125 aa9.19□□□□□ -0.94
SHMT2-231ENST00000557433 KRTAP10-2P60368 255 aa9.18□□□□□ -0.94
SHMT2-231ENST00000557433 C4orf48Q5BLP8 95 aa9.17□□□□□ -0.94
SHMT2-231ENST00000557433 KRTAP1-4P0C5Y4 121 aa9.17□□□□□ -0.94
SHMT2-231ENST00000557433 SPINK1P00995 79 aa9.16□□□□□ -0.94
SHMT2-231ENST00000557433 DNAH2Q9P225 4427 aa9.15□□□□□ -0.94
SHMT2-231ENST00000557433 MEGF8Q7Z7M0 2845 aa9.14□□□□□ -0.95
SHMT2-231ENST00000557433 RPS29P62273 56 aaKnown RBP9.11□□□□□ -0.95
SHMT2-231ENST00000557433 KRTAP10-1P60331 282 aa9.1□□□□□ -0.95
SHMT2-231ENST00000557433 DNAH6Q9C0G6 4158 aa9.09□□□□□ -0.95
SHMT2-231ENST00000557433 TYMSOSQ8TAI1 123 aa9.09□□□□□ -0.95
SHMT2-231ENST00000557433 KMT2AQ03164 3969 aa9.08□□□□□ -0.96
SHMT2-231ENST00000557433 DNAH11Q96DT5 4516 aa9.03□□□□□ -0.96
SHMT2-231ENST00000557433 PRAC1Q96KF2 57 aa9.03□□□□□ -0.96
SHMT2-231ENST00000557433 TGP01266 2768 aa8.97□□□□□ -0.97
SHMT2-231ENST00000557433 ADM2Q7Z4H4 148 aa8.97□□□□□ -0.97
SHMT2-231ENST00000557433 LINC00304Q8N9R0 145 aa8.97□□□□□ -0.97
SHMT2-231ENST00000557433 DNAH5Q8TE73 4624 aa8.97□□□□□ -0.97
SHMT2-231ENST00000557433 LINC01554Q52M75 96 aa8.95□□□□□ -0.98
SHMT2-231ENST00000557433 Q8N1X5 172 aa8.93□□□□□ -0.98
SHMT2-231ENST00000557433 A8MUU9 505 aa8.9□□□□□ -0.99
SHMT2-231ENST00000557433 C20orf166-AS1Q96NR2 134 aa8.9□□□□□ -0.99
SHMT2-231ENST00000557433 LRP1BQ9NZR2 4599 aa8.85□□□□□ -0.99
SHMT2-231ENST00000557433 CSAG1Q6PB30 78 aa8.81□□□□□ -1
SHMT2-231ENST00000557433 PKD1P98161 4303 aa8.8□□□□□ -1
SHMT2-231ENST00000557433 H0YAA0 97 aa8.8□□□□□ -1
SHMT2-231ENST00000557433 A0A1B0GU33 70 aa8.79□□□□□ -1
SHMT2-231ENST00000557433 H1FX-AS1Q4G0G2 97 aa8.76□□□□□ -1.01
SHMT2-231ENST00000557433 VPS13BQ7Z7G8 4022 aa8.76□□□□□ -1.01
SHMT2-231ENST00000557433 KRTAP3-1Q9BYR8 98 aa8.75□□□□□ -1.01
SHMT2-231ENST00000557433 FAT2Q9NYQ8 4349 aa8.74□□□□□ -1.01
SHMT2-231ENST00000557433 C9orf92A6NGG3 77 aa8.72□□□□□ -1.01
SHMT2-231ENST00000557433 SACSQ9NZJ4 4579 aa8.72□□□□□ -1.01
SHMT2-231ENST00000557433 COX6B2Q6YFQ2 88 aa8.68□□□□□ -1.02
SHMT2-231ENST00000557433 K7ERS5 55 aa8.66□□□□□ -1.02
SHMT2-231ENST00000557433 KRTAP25-1Q3LHN0 102 aa8.64□□□□□ -1.03
SHMT2-231ENST00000557433 KRTAP10-4P60372 401 aaPredicted RBP8.6□□□□□ -1.03
SHMT2-231ENST00000557433 SMR3BP02814 79 aaPredicted RBP8.58□□□□□ -1.04
SHMT2-231ENST00000557433 PKHD1L1Q86WI1 4243 aa8.56□□□□□ -1.04
SHMT2-231ENST00000557433 HYDINQ4G0P3 5121 aa8.54□□□□□ -1.04
SHMT2-231ENST00000557433 A0A1B0GVY2 172 aa8.52□□□□□ -1.05
SHMT2-231ENST00000557433 KMT2CQ8NEZ4 4911 aaKnown RBP8.47□□□□□ -1.05
SHMT2-231ENST00000557433 ROMO1P60602 79 aa8.43□□□□□ -1.06
SHMT2-231ENST00000557433 RPL37P61927 97 aaKnown RBP8.42□□□□□ -1.06
SHMT2-231ENST00000557433 APOBP04114 4563 aaKnown RBP8.42□□□□□ -1.06
SHMT2-231ENST00000557433 PKHD1P08F94 4074 aa8.42□□□□□ -1.06
SHMT2-231ENST00000557433 KRTAP10-6P60371 365 aaPredicted RBP8.4□□□□□ -1.06
SHMT2-231ENST00000557433 KRTAP3-3Q9BYR6 98 aa8.39□□□□□ -1.07
SHMT2-231ENST00000557433 DYNC1H1Q14204 4646 aaKnown RBP8.37□□□□□ -1.07
SHMT2-231ENST00000557433 RYR3Q15413 4870 aa8.37□□□□□ -1.07
SHMT2-231ENST00000557433 FLG2Q5D862 2391 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms