RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 C15orf56Q8N910 161 aa2.3□□□□□ -2.04
PRPF39-209ENST00000556353 CDC42SE2Q9NRR3 84 aa2.3□□□□□ -2.04
PRPF39-209ENST00000556353 PSENENQ9NZ42 101 aa2.3□□□□□ -2.04
PRPF39-209ENST00000556353 TRAV23DV6A0A075B6W5 121 aa2.29□□□□□ -2.04
PRPF39-209ENST00000556353 TRAV12-3A0A0B4J271 114 aa2.29□□□□□ -2.04
PRPF39-209ENST00000556353 SMIM27A0A1W2PRY6 76 aa2.29□□□□□ -2.04
PRPF39-209ENST00000556353 CHKB-CPT1BH3BT56 60 aa2.29□□□□□ -2.04
PRPF39-209ENST00000556353 TLX1NBP0CAT3 122 aa2.29□□□□□ -2.04
PRPF39-209ENST00000556353 Q6ZQT0 140 aa2.29□□□□□ -2.04
PRPF39-209ENST00000556353 C22orf24Q9Y442 160 aa2.29□□□□□ -2.04
PRPF39-209ENST00000556353 TIMM9Q9Y5J7 89 aa2.29□□□□□ -2.04
PRPF39-209ENST00000556353 LPAP08519 4548 aa2.28□□□□□ -2.04
PRPF39-209ENST00000556353 IGLV10-54A0A075B6I4 117 aa2.28□□□□□ -2.04
PRPF39-209ENST00000556353 IGKV2-40A0A087WW87 121 aaPredicted RBP2.28□□□□□ -2.04
PRPF39-209ENST00000556353 SPINK4O60575 86 aa2.28□□□□□ -2.04
PRPF39-209ENST00000556353 IGKV2D-40P01614 121 aaPredicted RBP2.28□□□□□ -2.04
PRPF39-209ENST00000556353 CCL18P55774 89 aa2.28□□□□□ -2.04
PRPF39-209ENST00000556353 LYZL1Q6UWQ5 148 aa2.28□□□□□ -2.04
PRPF39-209ENST00000556353 NTM-AS1Q6ZSK4 140 aa2.28□□□□□ -2.04
PRPF39-209ENST00000556353 WFDC10BQ8IUB3 73 aa2.28□□□□□ -2.04
PRPF39-209ENST00000556353 Q8TAT8 98 aa2.28□□□□□ -2.04
PRPF39-209ENST00000556353 TIMM8BQ9Y5J9 83 aaPredicted RBP2.28□□□□□ -2.04
PRPF39-209ENST00000556353 A0A087WTM6 91 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 TRGV1A0A0A0MS02 117 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 C11orf86A6NJI1 115 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 H3BNG1 76 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 H3BPC8 53 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 H7C2G1 150 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 PSCAO43653 123 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 BAALC-AS2P0C853 105 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 Q5VSD8 79 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 C10orf113Q5VZT2 155 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 C1orf64Q8NEQ6 169 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 V9GYV3 84 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 MUC2Q02817 5179 aa2.27□□□□□ -2.05
PRPF39-209ENST00000556353 TRBV7-4A0A0J9YYF1 115 aa2.26□□□□□ -2.05
PRPF39-209ENST00000556353 CTXND1A0A1B0GTU2 59 aa2.26□□□□□ -2.05
PRPF39-209ENST00000556353 IGHV3-53P01767 116 aa2.26□□□□□ -2.05
PRPF39-209ENST00000556353 SMR3BP02814 79 aaPredicted RBP2.26□□□□□ -2.05
PRPF39-209ENST00000556353 ARMS2P0C7Q2 107 aa2.26□□□□□ -2.05
PRPF39-209ENST00000556353 ELOF1P60002 83 aaKnown RBP2.26□□□□□ -2.05
PRPF39-209ENST00000556353 KRTAP10-4P60372 401 aaPredicted RBP2.26□□□□□ -2.05
PRPF39-209ENST00000556353 LINC00304Q8N9R0 145 aa2.26□□□□□ -2.05
PRPF39-209ENST00000556353 CIRBP-AS1Q8TBR5 109 aa2.26□□□□□ -2.05
PRPF39-209ENST00000556353 TMEM14CQ9P0S9 112 aa2.26□□□□□ -2.05
PRPF39-209ENST00000556353 TRGV2A0A075B6R0 118 aa2.25□□□□□ -2.05
PRPF39-209ENST00000556353 IGHV3-33P01772 117 aa2.25□□□□□ -2.05
PRPF39-209ENST00000556353 MIR22HGQ0VDD5 57 aa2.25□□□□□ -2.05
PRPF39-209ENST00000556353 PDE6HQ13956 83 aa2.25□□□□□ -2.05
PRPF39-209ENST00000556353 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.25□□□□□ -2.05
PRPF39-209ENST00000556353 Q86TA4 180 aa2.25□□□□□ -2.05
PRPF39-209ENST00000556353 MIR7-3HGQ8N6C7 128 aa2.25□□□□□ -2.05
PRPF39-209ENST00000556353 ICOSQ9Y6W8 199 aa2.25□□□□□ -2.05
PRPF39-209ENST00000556353 LINC01546A6NGU7 62 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 HIGD1CA8MV81 97 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 D6R8Y8 96 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 PLNP26678 52 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 FAM74A4Q5TZK3 123 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 SFTA2Q6UW10 78 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 Q6ZSA8 131 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 MUSTN1Q8IVN3 82 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 TMEM254Q8TBM7 123 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 C20orf166-AS1Q96NR2 134 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 AMELXQ99217 191 aa2.24□□□□□ -2.05
PRPF39-209ENST00000556353 A8MUU9 505 aa2.23□□□□□ -2.05
PRPF39-209ENST00000556353 FCER1GP30273 86 aa2.23□□□□□ -2.05
PRPF39-209ENST00000556353 PRO0255Q9UI72 69 aa2.23□□□□□ -2.05
PRPF39-209ENST00000556353 LENEPQ9Y5L5 61 aa2.23□□□□□ -2.05
PRPF39-209ENST00000556353 HMCN1Q96RW7 5635 aa2.22□□□□□ -2.05
PRPF39-209ENST00000556353 TRBV10-1A0A0K0K1A3 114 aa2.22□□□□□ -2.05
PRPF39-209ENST00000556353 PPP1R17O96001 155 aa2.22□□□□□ -2.05
PRPF39-209ENST00000556353 LINC01556Q5JQF7 62 aa2.22□□□□□ -2.05
PRPF39-209ENST00000556353 KRTAP26-1Q6PEX3 210 aa2.22□□□□□ -2.05
PRPF39-209ENST00000556353 SPANXA2-OT1Q8N9U9 137 aa2.22□□□□□ -2.05
PRPF39-209ENST00000556353 OBSCN-AS1Q96MR7 158 aa2.22□□□□□ -2.05
PRPF39-209ENST00000556353 Q9BRP9 147 aa2.22□□□□□ -2.05
PRPF39-209ENST00000556353 FAT4Q6V0I7 4981 aa2.21□□□□□ -2.05
PRPF39-209ENST00000556353 IGHV3-64A0A075B6Q5 118 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 TRAV12-1A0A0B4J245 112 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 TRGV4A0A0C4DH28 118 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 A0A1W2PNM2 257 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 DNAL4O96015 105 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 IGHV3-30P01768 117 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 ARL14EPLP0DKL9 152 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 IGHV3-30-5P0DP03 117 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 RNASE3P12724 160 aaKnown RBP2.21□□□□□ -2.06
PRPF39-209ENST00000556353 SNURFQ9Y675 71 aa2.21□□□□□ -2.06
PRPF39-209ENST00000556353 A0A087WVE0 104 aa2.2□□□□□ -2.06
PRPF39-209ENST00000556353 TRBV6-5A0A0K0K1A5 114 aa2.2□□□□□ -2.06
PRPF39-209ENST00000556353 H3BQ85 93 aa2.2□□□□□ -2.06
PRPF39-209ENST00000556353 NDUFB1O75438 58 aa2.2□□□□□ -2.06
PRPF39-209ENST00000556353 P0C880 135 aa2.2□□□□□ -2.06
PRPF39-209ENST00000556353 CRIP1P50238 77 aa2.2□□□□□ -2.06
PRPF39-209ENST00000556353 CNBPP62633 177 aaKnown RBP2.2□□□□□ -2.06
PRPF39-209ENST00000556353 C1orf137Q5JT78 98 aa2.2□□□□□ -2.06
PRPF39-209ENST00000556353 ORMDL1Q9P0S3 153 aa2.2□□□□□ -2.06
PRPF39-209ENST00000556353 TRAV21A0A0B4J279 112 aa2.19□□□□□ -2.06
PRPF39-209ENST00000556353 IGKV3D-7A0A0C4DH55 119 aa2.19□□□□□ -2.06
PRPF39-209ENST00000556353 A0A1B0GUT8 65 aa2.19□□□□□ -2.06
PRPF39-209ENST00000556353 TRBV6-4A0A1B0GX49 114 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms