RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 A0A1B0GW54 56 aa7.59□□□□□ -1.19
VIPAS39-206ENST00000553888 DSCR10P59022 87 aa7.59□□□□□ -1.19
VIPAS39-206ENST00000553888 RPL37AP61513 92 aaKnown RBP7.58□□□□□ -1.2
VIPAS39-206ENST00000553888 C7orf65Q6ZTY9 151 aa7.58□□□□□ -1.2
VIPAS39-206ENST00000553888 SMR3BP02814 79 aaPredicted RBP7.58□□□□□ -1.2
VIPAS39-206ENST00000553888 K7EQZ3 153 aa7.57□□□□□ -1.2
VIPAS39-206ENST00000553888 LINC01554Q52M75 96 aa7.57□□□□□ -1.2
VIPAS39-206ENST00000553888 A0A087X002 238 aa7.55□□□□□ -1.2
VIPAS39-206ENST00000553888 KLKP1Q107X0 134 aa7.54□□□□□ -1.2
VIPAS39-206ENST00000553888 A6NN06 94 aa7.53□□□□□ -1.2
VIPAS39-206ENST00000553888 ATP5EP56381 51 aaPredicted RBP7.53□□□□□ -1.2
VIPAS39-206ENST00000553888 LINC00472Q9H8W2 130 aa7.51□□□□□ -1.21
VIPAS39-206ENST00000553888 J3QL48 77 aa7.51□□□□□ -1.21
VIPAS39-206ENST00000553888 KRTAP13-2Q52LG2 175 aa7.51□□□□□ -1.21
VIPAS39-206ENST00000553888 KRTAP1-4P0C5Y4 121 aa7.49□□□□□ -1.21
VIPAS39-206ENST00000553888 Q96NJ1 140 aa7.49□□□□□ -1.21
VIPAS39-206ENST00000553888 Q1T7F1 81 aa7.47□□□□□ -1.21
VIPAS39-206ENST00000553888 WFDC13Q8IUB5 93 aa7.46□□□□□ -1.22
VIPAS39-206ENST00000553888 TRAV22A0A0B4J277 110 aa7.45□□□□□ -1.22
VIPAS39-206ENST00000553888 Q75L30 129 aa7.45□□□□□ -1.22
VIPAS39-206ENST00000553888 PRAC1Q96KF2 57 aa7.45□□□□□ -1.22
VIPAS39-206ENST00000553888 ATP11AUNQ6ZP68 121 aa7.44□□□□□ -1.22
VIPAS39-206ENST00000553888 TRAV7A0A075B6U4 112 aa7.43□□□□□ -1.22
VIPAS39-206ENST00000553888 HCG22E2RYF7 251 aa7.43□□□□□ -1.22
VIPAS39-206ENST00000553888 NDUFC1O43677 76 aa7.43□□□□□ -1.22
VIPAS39-206ENST00000553888 PLA2G1BP04054 148 aaKnown RBP7.43□□□□□ -1.22
VIPAS39-206ENST00000553888 A8MWP4 228 aa7.42□□□□□ -1.22
VIPAS39-206ENST00000553888 SPINK6Q6UWN8 80 aa7.42□□□□□ -1.22
VIPAS39-206ENST00000553888 HSPG2P98160 4391 aa7.41□□□□□ -1.22
VIPAS39-206ENST00000553888 OCR1Q9BZK8 76 aa7.41□□□□□ -1.22
VIPAS39-206ENST00000553888 KRTAP10-4P60372 401 aaPredicted RBP7.41□□□□□ -1.22
VIPAS39-206ENST00000553888 SSBP3-AS1Q7Z2R9 100 aa7.41□□□□□ -1.22
VIPAS39-206ENST00000553888 IGHV6-1A0A0B4J1U7 121 aa7.39□□□□□ -1.23
VIPAS39-206ENST00000553888 CHKB-CPT1BH3BT56 60 aa7.37□□□□□ -1.23
VIPAS39-206ENST00000553888 NOTCH2NLQ7Z3S9 236 aa7.37□□□□□ -1.23
VIPAS39-206ENST00000553888 KRTAP29-1A8MX34 341 aaPredicted RBP7.37□□□□□ -1.23
VIPAS39-206ENST00000553888 EPPK1P58107 5090 aaKnown RBP7.36□□□□□ -1.23
VIPAS39-206ENST00000553888 PKHD1L1Q86WI1 4243 aa7.36□□□□□ -1.23
VIPAS39-206ENST00000553888 MMP24-AS1A0A0U1RRL7 71 aa7.36□□□□□ -1.23
VIPAS39-206ENST00000553888 CASC2Q6XLA1 102 aa7.36□□□□□ -1.23
VIPAS39-206ENST00000553888 TYMSOSQ8TAI1 123 aa7.35□□□□□ -1.23
VIPAS39-206ENST00000553888 Q5VV11 94 aa7.35□□□□□ -1.23
VIPAS39-206ENST00000553888 NDUFB1O75438 58 aa7.34□□□□□ -1.23
VIPAS39-206ENST00000553888 RYR1P21817 5038 aa7.34□□□□□ -1.23
VIPAS39-206ENST00000553888 KIAA1109Q2LD37 5005 aa7.33□□□□□ -1.24
VIPAS39-206ENST00000553888 hDV103S1A0JD37 113 aa7.33□□□□□ -1.24
VIPAS39-206ENST00000553888 LRP1Q07954 4544 aaKnown RBP7.32□□□□□ -1.24
VIPAS39-206ENST00000553888 A0A1B0GVX0 72 aa7.32□□□□□ -1.24
VIPAS39-206ENST00000553888 KRTAP17-1Q9BYP8 105 aa7.32□□□□□ -1.24
VIPAS39-206ENST00000553888 TMEM254Q8TBM7 123 aa7.31□□□□□ -1.24
VIPAS39-206ENST00000553888 RETNLBQ9BQ08 111 aa7.31□□□□□ -1.24
VIPAS39-206ENST00000553888 C8orf17Q9NRJ1 99 aa7.31□□□□□ -1.24
VIPAS39-206ENST00000553888 CDK2AP2O75956 126 aa7.31□□□□□ -1.24
VIPAS39-206ENST00000553888 ADM2Q7Z4H4 148 aa7.3□□□□□ -1.24
VIPAS39-206ENST00000553888 ASB16-AS1Q495Z4 193 aa7.26□□□□□ -1.25
VIPAS39-206ENST00000553888 C1orf64Q8NEQ6 169 aa7.26□□□□□ -1.25
VIPAS39-206ENST00000553888 A6NED7 52 aa7.25□□□□□ -1.25
VIPAS39-206ENST00000553888 Q5VSD8 79 aa7.25□□□□□ -1.25
VIPAS39-206ENST00000553888 LINC00304Q8N9R0 145 aa7.25□□□□□ -1.25
VIPAS39-206ENST00000553888 TNXBP22105 4242 aa7.23□□□□□ -1.25
VIPAS39-206ENST00000553888 FAM229AH3BQW9 127 aa7.23□□□□□ -1.25
VIPAS39-206ENST00000553888 FLG2Q5D862 2391 aaPredicted RBP7.23□□□□□ -1.25
VIPAS39-206ENST00000553888 LIMD2Q9BT23 127 aa7.22□□□□□ -1.25
VIPAS39-206ENST00000553888 SPINK1P00995 79 aa7.21□□□□□ -1.25
VIPAS39-206ENST00000553888 MRPL34Q9BQ48 92 aaKnown RBP7.21□□□□□ -1.26
VIPAS39-206ENST00000553888 H0Y9P7 68 aa7.2□□□□□ -1.26
VIPAS39-206ENST00000553888 LINC00208Q96KT6 92 aa7.19□□□□□ -1.26
VIPAS39-206ENST00000553888 FAT3Q8TDW7 4589 aa7.18□□□□□ -1.26
VIPAS39-206ENST00000553888 ZCCHC13Q8WW36 166 aaKnown RBP7.18□□□□□ -1.26
VIPAS39-206ENST00000553888 PRR15LQ9BU68 103 aa7.18□□□□□ -1.26
VIPAS39-206ENST00000553888 MYCBP2O75592 4640 aa7.18□□□□□ -1.26
VIPAS39-206ENST00000553888 CDC42SE1Q9NRR8 79 aa7.17□□□□□ -1.26
VIPAS39-206ENST00000553888 Q5W150 140 aa7.14□□□□□ -1.27
VIPAS39-206ENST00000553888 SPAG11AQ6PDA7 123 aa7.13□□□□□ -1.27
VIPAS39-206ENST00000553888 Q8N1X5 172 aa7.13□□□□□ -1.27
VIPAS39-206ENST00000553888 KRTAP16-1A8MUX0 517 aa7.12□□□□□ -1.27
VIPAS39-206ENST00000553888 PRR4Q16378 134 aa7.12□□□□□ -1.27
VIPAS39-206ENST00000553888 TP53AIP1Q9HCN2 124 aa7.11□□□□□ -1.27
VIPAS39-206ENST00000553888 RPS29P62273 56 aaKnown RBP7.1□□□□□ -1.27
VIPAS39-206ENST00000553888 DMBT1Q9UGM3 2413 aaPredicted RBP7.1□□□□□ -1.27
VIPAS39-206ENST00000553888 CYP4F30PQ9H0H9 118 aa7.09□□□□□ -1.27
VIPAS39-206ENST00000553888 C9orf92A6NGG3 77 aa7.08□□□□□ -1.28
VIPAS39-206ENST00000553888 PCOTHQ58A44 107 aa7.07□□□□□ -1.28
VIPAS39-206ENST00000553888 KRTAP10-8P60410 259 aa7.07□□□□□ -1.28
VIPAS39-206ENST00000553888 KRTAP13-3Q3SY46 172 aa7.07□□□□□ -1.28
VIPAS39-206ENST00000553888 Q8N9P0 234 aaPredicted RBP7.07□□□□□ -1.28
VIPAS39-206ENST00000553888 KRTAP4-5Q9BYR2 181 aa7.05□□□□□ -1.28
VIPAS39-206ENST00000553888 H3BPC8 53 aa7.04□□□□□ -1.28
VIPAS39-206ENST00000553888 ROMO1P60602 79 aa7.04□□□□□ -1.28
VIPAS39-206ENST00000553888 SEC61BP60468 96 aaKnown RBP7.02□□□□□ -1.29
VIPAS39-206ENST00000553888 CSAG1Q6PB30 78 aa7.02□□□□□ -1.29
VIPAS39-206ENST00000553888 MT1HL1P0DM35 61 aa7□□□□□ -1.29
VIPAS39-206ENST00000553888 ABCA13Q86UQ4 5058 aa6.96□□□□□ -1.29
VIPAS39-206ENST00000553888 LOC101927531A0A1B0GV80 90 aa6.95□□□□□ -1.3
VIPAS39-206ENST00000553888 IGKV2D-30A0A075B6S6 120 aa6.93□□□□□ -1.3
VIPAS39-206ENST00000553888 IGKV2-30P06310 120 aa6.93□□□□□ -1.3
VIPAS39-206ENST00000553888 P0C880 135 aa6.92□□□□□ -1.3
VIPAS39-206ENST00000553888 SPINK7P58062 85 aa6.91□□□□□ -1.3
VIPAS39-206ENST00000553888 SPANXA2-OT1Q8N9U9 137 aa6.91□□□□□ -1.3
VIPAS39-206ENST00000553888 IGLV7-46A0A075B6I9 117 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms