RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 MT1BP07438 61 aa2.98□□□□□ -1.93
LIMA1-204ENST00000549064 LINC00308Q8TCZ7 52 aa2.98□□□□□ -1.93
LIMA1-204ENST00000549064 CLEC2BQ92478 149 aa2.98□□□□□ -1.93
LIMA1-204ENST00000549064 SEC11CQ9BY50 192 aa2.98□□□□□ -1.93
LIMA1-204ENST00000549064 A0A0B4J2C4 111 aa2.97□□□□□ -1.93
LIMA1-204ENST00000549064 Q6JHZ5 121 aa2.96□□□□□ -1.94
LIMA1-204ENST00000549064 SPRR2FQ96RM1 72 aa2.96□□□□□ -1.94
LIMA1-204ENST00000549064 TRAPPC1Q9Y5R8 145 aa2.96□□□□□ -1.94
LIMA1-204ENST00000549064 TRBV7-6A0A0J9YX20 115 aa2.95□□□□□ -1.94
LIMA1-204ENST00000549064 KRTAP12-2P59991 146 aa2.95□□□□□ -1.94
LIMA1-204ENST00000549064 SPINT4Q6UDR6 99 aa2.95□□□□□ -1.94
LIMA1-204ENST00000549064 H3BQ85 93 aa2.94□□□□□ -1.94
LIMA1-204ENST00000549064 S100PP25815 95 aa2.94□□□□□ -1.94
LIMA1-204ENST00000549064 LINC00313P59037 77 aa2.94□□□□□ -1.94
LIMA1-204ENST00000549064 PMCHL2Q9BQD1 86 aa2.94□□□□□ -1.94
LIMA1-204ENST00000549064 OCIAD2Q56VL3 154 aa2.93□□□□□ -1.94
LIMA1-204ENST00000549064 GPR98Q8WXG9 6306 aa2.92□□□□□ -1.94
LIMA1-204ENST00000549064 TRAV13-2A0A0B4J235 113 aa2.92□□□□□ -1.94
LIMA1-204ENST00000549064 H3BUT2 72 aa2.92□□□□□ -1.94
LIMA1-204ENST00000549064 KRTAP10-7P60409 375 aaPredicted RBP2.92□□□□□ -1.94
LIMA1-204ENST00000549064 A0A1W2PNM2 257 aa2.91□□□□□ -1.94
LIMA1-204ENST00000549064 PLNP26678 52 aa2.91□□□□□ -1.94
LIMA1-204ENST00000549064 LCE1EQ5T753 118 aa2.91□□□□□ -1.94
LIMA1-204ENST00000549064 Q5VV11 94 aa2.91□□□□□ -1.94
LIMA1-204ENST00000549064 Q6ZQY7 126 aa2.91□□□□□ -1.94
LIMA1-204ENST00000549064 SIGMAR1Q99720 223 aa2.91□□□□□ -1.94
LIMA1-204ENST00000549064 NHP2Q9NX24 153 aaKnown RBP2.91□□□□□ -1.94
LIMA1-204ENST00000549064 DPM2O94777 84 aa2.9□□□□□ -1.95
LIMA1-204ENST00000549064 SPRR2DP22532 72 aa2.9□□□□□ -1.95
LIMA1-204ENST00000549064 SPINK7P58062 85 aa2.9□□□□□ -1.95
LIMA1-204ENST00000549064 WFDC13Q8IUB5 93 aa2.9□□□□□ -1.95
LIMA1-204ENST00000549064 CHCHD1Q96BP2 118 aaKnown RBP2.9□□□□□ -1.95
LIMA1-204ENST00000549064 SS18L2Q9UHA2 77 aa2.9□□□□□ -1.95
LIMA1-204ENST00000549064 A0A087WSZ3 146 aa2.89□□□□□ -1.95
LIMA1-204ENST00000549064 ZNF815PA8K554 130 aa2.89□□□□□ -1.95
LIMA1-204ENST00000549064 TIMM17BO60830 172 aa2.89□□□□□ -1.95
LIMA1-204ENST00000549064 IGKCP01834 107 aa2.89□□□□□ -1.95
LIMA1-204ENST00000549064 KRTAP19-8Q3LI54 63 aa2.89□□□□□ -1.95
LIMA1-204ENST00000549064 SMIM11BQ8TCY0 68 aa2.89□□□□□ -1.95
LIMA1-204ENST00000549064 TTTY13Q9BZ97 58 aa2.88□□□□□ -1.95
LIMA1-204ENST00000549064 KRTAP25-1Q3LHN0 102 aa2.87□□□□□ -1.95
LIMA1-204ENST00000549064 LINC00575Q6W349 94 aa2.87□□□□□ -1.95
LIMA1-204ENST00000549064 C1orf64Q8NEQ6 169 aa2.87□□□□□ -1.95
LIMA1-204ENST00000549064 hADV29S1A0JD25 119 aa2.86□□□□□ -1.95
LIMA1-204ENST00000549064 TMEM218A2RU14 115 aa2.86□□□□□ -1.95
LIMA1-204ENST00000549064 LEPROTL1O95214 131 aa2.86□□□□□ -1.95
LIMA1-204ENST00000549064 ZCCHC13Q8WW36 166 aaKnown RBP2.86□□□□□ -1.95
LIMA1-204ENST00000549064 HSPB8Q9UJY1 196 aa2.86□□□□□ -1.95
LIMA1-204ENST00000549064 R4GN34 69 aa2.86□□□□□ -1.95
LIMA1-204ENST00000549064 IGKV4-1P06312 121 aa2.85□□□□□ -1.95
LIMA1-204ENST00000549064 FABP4P15090 132 aa2.85□□□□□ -1.95
LIMA1-204ENST00000549064 TEN1Q86WV5 123 aa2.85□□□□□ -1.95
LIMA1-204ENST00000549064 SNHG12Q9BXW3 62 aa2.85□□□□□ -1.95
LIMA1-204ENST00000549064 PRO0461Q9UI25 63 aa2.84□□□□□ -1.95
LIMA1-204ENST00000549064 DSTQ03001 7570 aaKnown RBP2.84□□□□□ -1.96
LIMA1-204ENST00000549064 FAM236AA0A1B0GUQ0 79 aa2.83□□□□□ -1.96
LIMA1-204ENST00000549064 FAM236BA0A1B0GV22 79 aa2.83□□□□□ -1.96
LIMA1-204ENST00000549064 BATFQ16520 125 aa2.83□□□□□ -1.96
LIMA1-204ENST00000549064 H1FX-AS1Q4G0G2 97 aa2.83□□□□□ -1.96
LIMA1-204ENST00000549064 SPRR2GQ9BYE4 73 aa2.83□□□□□ -1.96
LIMA1-204ENST00000549064 IMUPQ9GZP8 106 aa2.83□□□□□ -1.96
LIMA1-204ENST00000549064 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.82□□□□□ -1.96
LIMA1-204ENST00000549064 MUSTN1Q8IVN3 82 aa2.82□□□□□ -1.96
LIMA1-204ENST00000549064 KRTAP8-1Q8IUC2 63 aa2.81□□□□□ -1.96
LIMA1-204ENST00000549064 A0A1B0GU33 70 aa2.8□□□□□ -1.96
LIMA1-204ENST00000549064 IFITM1P13164 125 aa2.8□□□□□ -1.96
LIMA1-204ENST00000549064 PPDPFLQ8WWR9 84 aa2.8□□□□□ -1.96
LIMA1-204ENST00000549064 PMAIP1Q13794 54 aa2.79□□□□□ -1.96
LIMA1-204ENST00000549064 CLLU1Q5K131 121 aa2.78□□□□□ -1.96
LIMA1-204ENST00000549064 COPS9Q8WXC6 57 aa2.78□□□□□ -1.96
LIMA1-204ENST00000549064 LINC00472Q9H8W2 130 aa2.78□□□□□ -1.96
LIMA1-204ENST00000549064 H3BMG7 143 aa2.76□□□□□ -1.97
LIMA1-204ENST00000549064 SYS1-DBNDD2H3BUS1 97 aa2.76□□□□□ -1.97
LIMA1-204ENST00000549064 KRTAP9-6A8MVA2 160 aa2.75□□□□□ -1.97
LIMA1-204ENST00000549064 C3orf79P0CE67 100 aa2.75□□□□□ -1.97
LIMA1-204ENST00000549064 TRGC2P03986 189 aa2.74□□□□□ -1.97
LIMA1-204ENST00000549064 LYRM7Q5U5X0 104 aa2.74□□□□□ -1.97
LIMA1-204ENST00000549064 LINC01545Q5VT33 79 aa2.74□□□□□ -1.97
LIMA1-204ENST00000549064 RAB37Q96AX2 223 aa2.74□□□□□ -1.97
LIMA1-204ENST00000549064 C12orf57Q99622 126 aa2.74□□□□□ -1.97
LIMA1-204ENST00000549064 A0A1B0GV72 72 aa2.73□□□□□ -1.97
LIMA1-204ENST00000549064 A8MUN3 132 aa2.73□□□□□ -1.97
LIMA1-204ENST00000549064 IGKV3D-7A0A0C4DH55 119 aa2.72□□□□□ -1.97
LIMA1-204ENST00000549064 SPRR5A0A1B0GTR4 108 aa2.72□□□□□ -1.97
LIMA1-204ENST00000549064 BVES-AS1Q5T3Y7 98 aa2.72□□□□□ -1.97
LIMA1-204ENST00000549064 TRBV7-4A0A0J9YYF1 115 aa2.71□□□□□ -1.98
LIMA1-204ENST00000549064 APOC3P02656 99 aa2.71□□□□□ -1.98
LIMA1-204ENST00000549064 FABP2P12104 132 aa2.71□□□□□ -1.98
LIMA1-204ENST00000549064 KLKP1Q107X0 134 aa2.71□□□□□ -1.98
LIMA1-204ENST00000549064 MT1XP80297 61 aa2.7□□□□□ -1.98
LIMA1-204ENST00000549064 KRTAP5-11Q6L8G4 156 aa2.7□□□□□ -1.98
LIMA1-204ENST00000549064 C2orf91Q6ZV80 131 aa2.7□□□□□ -1.98
LIMA1-204ENST00000549064 ANKRD29Q8N6D5 301 aa2.7□□□□□ -1.98
LIMA1-204ENST00000549064 DSCR8Q96T75 97 aa2.7□□□□□ -1.98
LIMA1-204ENST00000549064 TRACP01848 142 aa2.68□□□□□ -1.98
LIMA1-204ENST00000549064 CCKP06307 115 aa2.68□□□□□ -1.98
LIMA1-204ENST00000549064 RBM3P98179 157 aaKnown RBP2.68□□□□□ -1.98
LIMA1-204ENST00000549064 ATOH7Q8N100 152 aa2.68□□□□□ -1.98
LIMA1-204ENST00000549064 LCA10Q71F78 164 aa2.66□□□□□ -1.98
LIMA1-204ENST00000549064 SVBPQ8N300 66 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms