RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 FLG2Q5D862 2391 aaPredicted RBP9.38□□□□□ -0.91
CUX1-211ENST00000546411 Q6ZRN7 208 aaPredicted RBP9.36□□□□□ -0.91
CUX1-211ENST00000546411 KRTAP10-1P60331 282 aa9.36□□□□□ -0.91
CUX1-211ENST00000546411 IGLV7-46A0A075B6I9 117 aa9.36□□□□□ -0.91
CUX1-211ENST00000546411 A0A087X002 238 aa9.33□□□□□ -0.92
CUX1-211ENST00000546411 NOTCH2NLQ7Z3S9 236 aa9.33□□□□□ -0.92
CUX1-211ENST00000546411 HRES1P13985 223 aa9.33□□□□□ -0.92
CUX1-211ENST00000546411 KTN1-AS1Q86SY8 53 aa9.32□□□□□ -0.92
CUX1-211ENST00000546411 Q1T7F1 81 aa9.32□□□□□ -0.92
CUX1-211ENST00000546411 Q6ZR54 194 aa9.32□□□□□ -0.92
CUX1-211ENST00000546411 KRTAP29-1A8MX34 341 aaPredicted RBP9.32□□□□□ -0.92
CUX1-211ENST00000546411 ZNF469Q96JG9 3925 aaPredicted RBP9.31□□□□□ -0.92
CUX1-211ENST00000546411 RBM12B-AS1Q9P1G2 102 aa9.3□□□□□ -0.92
CUX1-211ENST00000546411 UQCR11O14957 56 aa9.26□□□□□ -0.93
CUX1-211ENST00000546411 SRRM2Q9UQ35 2752 aaKnown RBP9.25□□□□□ -0.93
CUX1-211ENST00000546411 LINC00483Q53H64 154 aa9.24□□□□□ -0.93
CUX1-211ENST00000546411 ZCCHC13Q8WW36 166 aaKnown RBP9.23□□□□□ -0.93
CUX1-211ENST00000546411 Q5W150 140 aa9.22□□□□□ -0.93
CUX1-211ENST00000546411 MIR22HGQ0VDD5 57 aa9.21□□□□□ -0.94
CUX1-211ENST00000546411 ANK3Q12955 4377 aaKnown RBP9.19□□□□□ -0.94
CUX1-211ENST00000546411 Q5VV11 94 aa9.18□□□□□ -0.94
CUX1-211ENST00000546411 KRTAP13-1Q8IUC0 172 aa9.17□□□□□ -0.94
CUX1-211ENST00000546411 CDC42SE1Q9NRR8 79 aa9.13□□□□□ -0.95
CUX1-211ENST00000546411 FBN3Q75N90 2809 aa9.13□□□□□ -0.95
CUX1-211ENST00000546411 H3BS24 57 aa9.11□□□□□ -0.95
CUX1-211ENST00000546411 SPINK7P58062 85 aa9.11□□□□□ -0.95
CUX1-211ENST00000546411 LCA10Q71F78 164 aa9.11□□□□□ -0.95
CUX1-211ENST00000546411 Q75L30 129 aa9.09□□□□□ -0.95
CUX1-211ENST00000546411 LINC01558Q9Y6Z2 57 aa9.09□□□□□ -0.95
CUX1-211ENST00000546411 LCE6AA0A183 80 aa9.07□□□□□ -0.96
CUX1-211ENST00000546411 KRTAP13-2Q52LG2 175 aa9.04□□□□□ -0.96
CUX1-211ENST00000546411 A0A0D9SG42 100 aa9.01□□□□□ -0.97
CUX1-211ENST00000546411 A8MU10 97 aa8.99□□□□□ -0.97
CUX1-211ENST00000546411 J3QL48 77 aa8.96□□□□□ -0.97
CUX1-211ENST00000546411 COL7A1Q02388 2944 aa8.95□□□□□ -0.98
CUX1-211ENST00000546411 DMAC1Q96GE9 116 aa8.94□□□□□ -0.98
CUX1-211ENST00000546411 CSMD3Q7Z407 3707 aa8.92□□□□□ -0.98
CUX1-211ENST00000546411 PRAC1Q96KF2 57 aa8.92□□□□□ -0.98
CUX1-211ENST00000546411 MEGF8Q7Z7M0 2845 aa8.92□□□□□ -0.98
CUX1-211ENST00000546411 A0A1B0GU33 70 aa8.89□□□□□ -0.99
CUX1-211ENST00000546411 Q5VSD8 79 aa8.88□□□□□ -0.99
CUX1-211ENST00000546411 LINC01554Q52M75 96 aa8.88□□□□□ -0.99
CUX1-211ENST00000546411 ASB16-AS1Q495Z4 193 aa8.83□□□□□ -1
CUX1-211ENST00000546411 SPINT4Q6UDR6 99 aa8.82□□□□□ -1
CUX1-211ENST00000546411 COX6B2Q6YFQ2 88 aa8.81□□□□□ -1
CUX1-211ENST00000546411 A6NN06 94 aa8.8□□□□□ -1
CUX1-211ENST00000546411 Q6ZSA8 131 aa8.8□□□□□ -1
CUX1-211ENST00000546411 AKAP9Q99996 3911 aa8.79□□□□□ -1
CUX1-211ENST00000546411 CRIPTQ9P021 101 aa8.75□□□□□ -1.01
CUX1-211ENST00000546411 KRTAP1-4P0C5Y4 121 aa8.74□□□□□ -1.01
CUX1-211ENST00000546411 SPATA8Q6RVD6 105 aa8.69□□□□□ -1.02
CUX1-211ENST00000546411 CSAG1Q6PB30 78 aa8.65□□□□□ -1.02
CUX1-211ENST00000546411 S4R3F8 94 aa8.65□□□□□ -1.02
CUX1-211ENST00000546411 ADM2Q7Z4H4 148 aa8.58□□□□□ -1.04
CUX1-211ENST00000546411 H1FX-AS1Q4G0G2 97 aa8.56□□□□□ -1.04
CUX1-211ENST00000546411 RPS29P62273 56 aaKnown RBP8.56□□□□□ -1.04
CUX1-211ENST00000546411 KRTAP16-1A8MUX0 517 aa8.49□□□□□ -1.05
CUX1-211ENST00000546411 A8MUU9 505 aa8.47□□□□□ -1.05
CUX1-211ENST00000546411 RPL37P61927 97 aaKnown RBP8.46□□□□□ -1.05
CUX1-211ENST00000546411 HUWE1Q7Z6Z7 4374 aaKnown RBP8.45□□□□□ -1.06
CUX1-211ENST00000546411 C20orf166-AS1Q96NR2 134 aa8.44□□□□□ -1.06
CUX1-211ENST00000546411 KRTAP21-3Q3LHN1 58 aa8.44□□□□□ -1.06
CUX1-211ENST00000546411 R4GN34 69 aa8.43□□□□□ -1.06
CUX1-211ENST00000546411 KRTAP13-3Q3SY46 172 aa8.4□□□□□ -1.06
CUX1-211ENST00000546411 CAMK2N1Q7Z7J9 78 aa8.38□□□□□ -1.07
CUX1-211ENST00000546411 SEC61BP60468 96 aaKnown RBP8.37□□□□□ -1.07
CUX1-211ENST00000546411 M0QZ58 72 aa8.35□□□□□ -1.07
CUX1-211ENST00000546411 M0R2T5 61 aa8.31□□□□□ -1.08
CUX1-211ENST00000546411 ROMO1P60602 79 aa8.31□□□□□ -1.08
CUX1-211ENST00000546411 XP32Q5T750 250 aa8.27□□□□□ -1.08
CUX1-211ENST00000546411 H0YAA0 97 aa8.21□□□□□ -1.09
CUX1-211ENST00000546411 DNAH10Q8IVF4 4471 aa8.21□□□□□ -1.09
CUX1-211ENST00000546411 A0A1B0GVY2 172 aa8.21□□□□□ -1.1
CUX1-211ENST00000546411 DNAH9Q9NYC9 4486 aa8.16□□□□□ -1.1
CUX1-211ENST00000546411 PLECQ15149 4684 aaKnown RBP8.14□□□□□ -1.11
CUX1-211ENST00000546411 KRTAP25-1Q3LHN0 102 aa8.14□□□□□ -1.11
CUX1-211ENST00000546411 DNHD1Q96M86 4753 aa8.1□□□□□ -1.11
CUX1-211ENST00000546411 KRTAP10-8P60410 259 aa8.08□□□□□ -1.12
CUX1-211ENST00000546411 P0C880 135 aa8.06□□□□□ -1.12
CUX1-211ENST00000546411 ANK2Q01484 3957 aa8.05□□□□□ -1.12
CUX1-211ENST00000546411 KRTAP3-1Q9BYR8 98 aa8.03□□□□□ -1.12
CUX1-211ENST00000546411 DNAH11Q96DT5 4516 aa8.01□□□□□ -1.13
CUX1-211ENST00000546411 C10orf95Q9H7T3 257 aa8.01□□□□□ -1.13
CUX1-211ENST00000546411 A0A0A0MQY5 61 aa7.98□□□□□ -1.13
CUX1-211ENST00000546411 DNAH1Q9P2D7 4330 aa7.97□□□□□ -1.13
CUX1-211ENST00000546411 LUZP6Q538Z0 58 aa7.96□□□□□ -1.14
CUX1-211ENST00000546411 STARD9Q9P2P6 4700 aa7.94□□□□□ -1.14
CUX1-211ENST00000546411 TPRXLQ17RH7 258 aa7.93□□□□□ -1.14
CUX1-211ENST00000546411 PRKDCP78527 4128 aaKnown RBP7.92□□□□□ -1.14
CUX1-211ENST00000546411 NDUFAF8A1L188 74 aa7.87□□□□□ -1.15
CUX1-211ENST00000546411 LYSTQ99698 3801 aa7.86□□□□□ -1.15
CUX1-211ENST00000546411 DNAH5Q8TE73 4624 aa7.85□□□□□ -1.15
CUX1-211ENST00000546411 KMT2AQ03164 3969 aa7.82□□□□□ -1.16
CUX1-211ENST00000546411 KRTAP10-4P60372 401 aaPredicted RBP7.79□□□□□ -1.16
CUX1-211ENST00000546411 FAT1Q14517 4588 aa7.78□□□□□ -1.16
CUX1-211ENST00000546411 PLAC4Q8WY50 150 aa7.77□□□□□ -1.17
CUX1-211ENST00000546411 VPS13DQ5THJ4 4388 aa7.76□□□□□ -1.17
CUX1-211ENST00000546411 LRP1BQ9NZR2 4599 aa7.73□□□□□ -1.17
CUX1-211ENST00000546411 DNAH8Q96JB1 4490 aa7.73□□□□□ -1.17
CUX1-211ENST00000546411 KRTAP13-4Q3LI77 160 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms