RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PKHD1L1Q86WI1 4243 aa3.31□□□□□ -1.88
USP28-213ENST00000544967 IGLV1-50A0A075B6I6 118 aa3.3□□□□□ -1.88
USP28-213ENST00000544967 DEFB131BA0A096LNP1 70 aa3.3□□□□□ -1.88
USP28-213ENST00000544967 C7orf33Q8WU49 177 aa3.3□□□□□ -1.88
USP28-213ENST00000544967 C15orf56Q8N910 161 aa3.3□□□□□ -1.88
USP28-213ENST00000544967 A8MWP4 228 aa3.29□□□□□ -1.88
USP28-213ENST00000544967 DNAH5Q8TE73 4624 aa3.29□□□□□ -1.88
USP28-213ENST00000544967 A0A096LPF7 62 aa3.29□□□□□ -1.88
USP28-213ENST00000544967 IGLV5-52A0A0A0MRZ9 124 aa3.29□□□□□ -1.88
USP28-213ENST00000544967 SPRR1BP22528 89 aa3.28□□□□□ -1.88
USP28-213ENST00000544967 DNAH10OSP0CZ25 163 aa3.28□□□□□ -1.88
USP28-213ENST00000544967 RETNLBQ9BQ08 111 aa3.28□□□□□ -1.88
USP28-213ENST00000544967 VPS13BQ7Z7G8 4022 aa3.27□□□□□ -1.89
USP28-213ENST00000544967 PRR4Q16378 134 aa3.27□□□□□ -1.89
USP28-213ENST00000544967 IGFL1Q6UW32 110 aa3.27□□□□□ -1.89
USP28-213ENST00000544967 DEFB4AO15263 64 aa3.27□□□□□ -1.89
USP28-213ENST00000544967 Q6ZRN7 208 aaPredicted RBP3.27□□□□□ -1.89
USP28-213ENST00000544967 LINC00472Q9H8W2 130 aa3.27□□□□□ -1.89
USP28-213ENST00000544967 TENM2Q9NT68 2774 aa3.26□□□□□ -1.89
USP28-213ENST00000544967 A0A1B0GVY2 172 aa3.26□□□□□ -1.89
USP28-213ENST00000544967 DEFB105AQ8NG35 78 aa3.26□□□□□ -1.89
USP28-213ENST00000544967 LINC01556Q5JQF7 62 aa3.25□□□□□ -1.89
USP28-213ENST00000544967 LCE2BO14633 110 aa3.25□□□□□ -1.89
USP28-213ENST00000544967 WFDC13Q8IUB5 93 aa3.25□□□□□ -1.89
USP28-213ENST00000544967 MMP24-AS1A0A0U1RRL7 71 aa3.25□□□□□ -1.89
USP28-213ENST00000544967 C8orf17Q9NRJ1 99 aa3.24□□□□□ -1.89
USP28-213ENST00000544967 RPL37AP61513 92 aaKnown RBP3.24□□□□□ -1.89
USP28-213ENST00000544967 PKHD1P08F94 4074 aa3.24□□□□□ -1.89
USP28-213ENST00000544967 APOBP04114 4563 aaKnown RBP3.23□□□□□ -1.89
USP28-213ENST00000544967 RTL8CO15255 209 aa3.23□□□□□ -1.89
USP28-213ENST00000544967 WFDC10BQ8IUB3 73 aa3.23□□□□□ -1.89
USP28-213ENST00000544967 BIRC6Q9NR09 4857 aa3.23□□□□□ -1.89
USP28-213ENST00000544967 SPATA8Q6RVD6 105 aa3.23□□□□□ -1.89
USP28-213ENST00000544967 A0A087WSZ3 146 aa3.23□□□□□ -1.89
USP28-213ENST00000544967 SPINK7P58062 85 aa3.23□□□□□ -1.89
USP28-213ENST00000544967 KRTAP1-5Q9BYS1 174 aa3.23□□□□□ -1.89
USP28-213ENST00000544967 EPPK1P58107 5090 aaKnown RBP3.22□□□□□ -1.89
USP28-213ENST00000544967 NBDYA0A0U1RRE5 68 aa3.22□□□□□ -1.89
USP28-213ENST00000544967 KRTAP23-1A1A580 65 aa3.22□□□□□ -1.89
USP28-213ENST00000544967 HRES1P13985 223 aa3.22□□□□□ -1.89
USP28-213ENST00000544967 C1orf134Q5TEV5 83 aa3.22□□□□□ -1.89
USP28-213ENST00000544967 IGKV2-24A0A0C4DH68 120 aa3.21□□□□□ -1.89
USP28-213ENST00000544967 LUZP6Q538Z0 58 aa3.21□□□□□ -1.9
USP28-213ENST00000544967 SPAG11AQ6PDA7 123 aa3.21□□□□□ -1.9
USP28-213ENST00000544967 ROMO1P60602 79 aa3.2□□□□□ -1.9
USP28-213ENST00000544967 LRP1BQ9NZR2 4599 aa3.2□□□□□ -1.9
USP28-213ENST00000544967 HTN3P15516 51 aa3.19□□□□□ -1.9
USP28-213ENST00000544967 KRTAP7-1Q8IUC3 87 aa3.19□□□□□ -1.9
USP28-213ENST00000544967 HERC2O95714 4834 aa3.19□□□□□ -1.9
USP28-213ENST00000544967 HSPG2P98160 4391 aa3.19□□□□□ -1.9
USP28-213ENST00000544967 ACYP2P14621 99 aa3.18□□□□□ -1.9
USP28-213ENST00000544967 KRTAP17-1Q9BYP8 105 aa3.18□□□□□ -1.9
USP28-213ENST00000544967 RYR1P21817 5038 aa3.18□□□□□ -1.9
USP28-213ENST00000544967 DEFB116Q30KQ4 102 aa3.17□□□□□ -1.9
USP28-213ENST00000544967 DMAC1Q96GE9 116 aa3.17□□□□□ -1.9
USP28-213ENST00000544967 Q96NJ1 140 aa3.16□□□□□ -1.9
USP28-213ENST00000544967 Q6ZSA8 131 aa3.16□□□□□ -1.9
USP28-213ENST00000544967 MRPL34Q9BQ48 92 aaKnown RBP3.16□□□□□ -1.9
USP28-213ENST00000544967 LY6G6CO95867 125 aa3.16□□□□□ -1.9
USP28-213ENST00000544967 KRTAP13-3Q3SY46 172 aa3.16□□□□□ -1.9
USP28-213ENST00000544967 A0A1B0GVX0 72 aa3.15□□□□□ -1.9
USP28-213ENST00000544967 UQCR11O14957 56 aa3.14□□□□□ -1.91
USP28-213ENST00000544967 PCOTHQ58A44 107 aa3.14□□□□□ -1.91
USP28-213ENST00000544967 FAM168BA1KXE4 195 aa3.14□□□□□ -1.91
USP28-213ENST00000544967 P0C880 135 aa3.14□□□□□ -1.91
USP28-213ENST00000544967 UBE2DNLQ8IWF7 75 aa3.14□□□□□ -1.91
USP28-213ENST00000544967 A0A087WTM6 91 aa3.14□□□□□ -1.91
USP28-213ENST00000544967 CIRBP-AS1Q8TBR5 109 aa3.13□□□□□ -1.91
USP28-213ENST00000544967 A0A1B0GU69 56 aa3.13□□□□□ -1.91
USP28-213ENST00000544967 MIR22HGQ0VDD5 57 aa3.13□□□□□ -1.91
USP28-213ENST00000544967 LINC00483Q53H64 154 aa3.13□□□□□ -1.91
USP28-213ENST00000544967 FAT3Q8TDW7 4589 aa3.12□□□□□ -1.91
USP28-213ENST00000544967 C14orf177Q52M58 125 aa3.11□□□□□ -1.91
USP28-213ENST00000544967 KRTAP13-1Q8IUC0 172 aa3.11□□□□□ -1.91
USP28-213ENST00000544967 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.11□□□□□ -1.91
USP28-213ENST00000544967 PRLHP81277 87 aa3.1□□□□□ -1.91
USP28-213ENST00000544967 K7ERS5 55 aa3.09□□□□□ -1.91
USP28-213ENST00000544967 KRTAP10-2P60368 255 aa3.09□□□□□ -1.91
USP28-213ENST00000544967 A0A0G2JQZ4 141 aa3.09□□□□□ -1.92
USP28-213ENST00000544967 A0A1W2PNN7 141 aa3.09□□□□□ -1.92
USP28-213ENST00000544967 ZNF861PO60384 105 aa3.09□□□□□ -1.92
USP28-213ENST00000544967 KRTAP10-4P60372 401 aaPredicted RBP3.09□□□□□ -1.92
USP28-213ENST00000544967 CSAG1Q6PB30 78 aa3.07□□□□□ -1.92
USP28-213ENST00000544967 A0A096LNI7 61 aa3.07□□□□□ -1.92
USP28-213ENST00000544967 A8MUU9 505 aa3.07□□□□□ -1.92
USP28-213ENST00000544967 IGLV7-43P04211 117 aa3.07□□□□□ -1.92
USP28-213ENST00000544967 SPACA4Q8TDM5 124 aa3.06□□□□□ -1.92
USP28-213ENST00000544967 C20orf166-AS1Q96NR2 134 aa3.06□□□□□ -1.92
USP28-213ENST00000544967 FAT1Q14517 4588 aa3.06□□□□□ -1.92
USP28-213ENST00000544967 KRTAP10-1P60331 282 aa3.06□□□□□ -1.92
USP28-213ENST00000544967 IGKV2-30P06310 120 aa3.05□□□□□ -1.92
USP28-213ENST00000544967 KIAA1109Q2LD37 5005 aa3.05□□□□□ -1.92
USP28-213ENST00000544967 KRTAP25-1Q3LHN0 102 aa3.05□□□□□ -1.92
USP28-213ENST00000544967 ABCA13Q86UQ4 5058 aa3.05□□□□□ -1.92
USP28-213ENST00000544967 TNXBP22105 4242 aa3.04□□□□□ -1.92
USP28-213ENST00000544967 Q5W150 140 aa3.03□□□□□ -1.92
USP28-213ENST00000544967 NDUFAF8A1L188 74 aa3.03□□□□□ -1.92
USP28-213ENST00000544967 ANAPC11Q9NYG5 84 aa3.03□□□□□ -1.92
USP28-213ENST00000544967 Q8N1X5 172 aa3.02□□□□□ -1.93
USP28-213ENST00000544967 LCE2CQ5TA81 110 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms