RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 GTF2H5Q6ZYL4 71 aa3.03□□□□□ -1.92
CLIP1-217ENST00000543205 SMCR5Q8TEV8 140 aa3.03□□□□□ -1.92
CLIP1-217ENST00000543205 A0A1B0GW54 56 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 H7C2G1 150 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 COL5A1-AS1Q5SY13 56 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 SMIM11BQ8TCY0 68 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 A0A0B4J2C4 111 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 A8MUU9 505 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 FXYD2P54710 66 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 ELOF1P60002 83 aaKnown RBP3.02□□□□□ -1.93
CLIP1-217ENST00000543205 FAM229BQ4G0N7 80 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 Q9BRP9 147 aa3.02□□□□□ -1.93
CLIP1-217ENST00000543205 KRTAP1-4P0C5Y4 121 aa3.01□□□□□ -1.93
CLIP1-217ENST00000543205 CRYGAP11844 174 aa3.01□□□□□ -1.93
CLIP1-217ENST00000543205 KRTAP5-4Q6L8H1 288 aa3.01□□□□□ -1.93
CLIP1-217ENST00000543205 KRTAP5-1Q6L8H4 278 aa3.01□□□□□ -1.93
CLIP1-217ENST00000543205 SPRR4Q96PI1 79 aa3.01□□□□□ -1.93
CLIP1-217ENST00000543205 ANAPC11Q9NYG5 84 aa3.01□□□□□ -1.93
CLIP1-217ENST00000543205 PRO1854Q9UHT4 67 aa3.01□□□□□ -1.93
CLIP1-217ENST00000543205 ERC2-IT1O76042 136 aa3□□□□□ -1.93
CLIP1-217ENST00000543205 NHP2Q9NX24 153 aaKnown RBP3□□□□□ -1.93
CLIP1-217ENST00000543205 HMCN2Q8NDA2 5059 aa3□□□□□ -1.93
CLIP1-217ENST00000543205 PKHD1L1Q86WI1 4243 aa3□□□□□ -1.93
CLIP1-217ENST00000543205 BVES-AS1Q5T3Y7 98 aa3□□□□□ -1.93
CLIP1-217ENST00000543205 C7orf65Q6ZTY9 151 aa3□□□□□ -1.93
CLIP1-217ENST00000543205 TEN1Q86WV5 123 aa3□□□□□ -1.93
CLIP1-217ENST00000543205 MT1HL1P0DM35 61 aa2.99□□□□□ -1.93
CLIP1-217ENST00000543205 KRTAP10-8P60410 259 aa2.99□□□□□ -1.93
CLIP1-217ENST00000543205 UQCRQO14949 82 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 SNCGO76070 127 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 LINC00575Q6W349 94 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 ST20-AS1Q8NBB2 130 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 hADV29S1A0JD25 119 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 H0YGX0 51 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 H3BT86 120 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 LINC00483Q53H64 154 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 C1orf64Q8NEQ6 169 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 DEFB105AQ8NG35 78 aa2.98□□□□□ -1.93
CLIP1-217ENST00000543205 MT3P25713 68 aa2.97□□□□□ -1.93
CLIP1-217ENST00000543205 KRTAP13-2Q52LG2 175 aa2.97□□□□□ -1.93
CLIP1-217ENST00000543205 TEX49A0A1B0GTD5 131 aa2.97□□□□□ -1.93
CLIP1-217ENST00000543205 COX6CP09669 75 aa2.97□□□□□ -1.93
CLIP1-217ENST00000543205 TMEM258P61165 79 aa2.97□□□□□ -1.93
CLIP1-217ENST00000543205 SPRR1BP22528 89 aa2.96□□□□□ -1.94
CLIP1-217ENST00000543205 HIST1H4AP62805 103 aaKnown RBP2.96□□□□□ -1.94
CLIP1-217ENST00000543205 C9orf153Q5TBE3 101 aa2.96□□□□□ -1.94
CLIP1-217ENST00000543205 MOBPQ13875 183 aa2.95□□□□□ -1.94
CLIP1-217ENST00000543205 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.95□□□□□ -1.94
CLIP1-217ENST00000543205 Q6ZQY7 126 aa2.95□□□□□ -1.94
CLIP1-217ENST00000543205 RNF213Q63HN8 5207 aa2.95□□□□□ -1.94
CLIP1-217ENST00000543205 LRP1Q07954 4544 aaKnown RBP2.95□□□□□ -1.94
CLIP1-217ENST00000543205 IGLV5-48A0A075B6I7 105 aa2.95□□□□□ -1.94
CLIP1-217ENST00000543205 SSBP3-AS1Q7Z2R9 100 aa2.95□□□□□ -1.94
CLIP1-217ENST00000543205 LINC00304Q8N9R0 145 aa2.95□□□□□ -1.94
CLIP1-217ENST00000543205 KRTAP2-2Q9BYT5 123 aa2.95□□□□□ -1.94
CLIP1-217ENST00000543205 DEFB116Q30KQ4 102 aa2.94□□□□□ -1.94
CLIP1-217ENST00000543205 CLEC2BQ92478 149 aa2.94□□□□□ -1.94
CLIP1-217ENST00000543205 FAT3Q8TDW7 4589 aa2.94□□□□□ -1.94
CLIP1-217ENST00000543205 F8WEM9 126 aa2.93□□□□□ -1.94
CLIP1-217ENST00000543205 DNAL4O96015 105 aa2.93□□□□□ -1.94
CLIP1-217ENST00000543205 SPAG11AQ6PDA7 123 aa2.93□□□□□ -1.94
CLIP1-217ENST00000543205 SPANXA2-OT1Q8N9U9 137 aa2.93□□□□□ -1.94
CLIP1-217ENST00000543205 PPDPFLQ8WWR9 84 aa2.93□□□□□ -1.94
CLIP1-217ENST00000543205 Q5W150 140 aa2.93□□□□□ -1.94
CLIP1-217ENST00000543205 KRTAP4-4Q9BYR3 166 aa2.93□□□□□ -1.94
CLIP1-217ENST00000543205 TRBV20-1A0A075B6N2 111 aa2.92□□□□□ -1.94
CLIP1-217ENST00000543205 H3BQ85 93 aa2.92□□□□□ -1.94
CLIP1-217ENST00000543205 SPINK1P00995 79 aa2.92□□□□□ -1.94
CLIP1-217ENST00000543205 ORMDL1Q9P0S3 153 aa2.92□□□□□ -1.94
CLIP1-217ENST00000543205 H3BUT2 72 aa2.91□□□□□ -1.94
CLIP1-217ENST00000543205 TRACP01848 142 aa2.91□□□□□ -1.94
CLIP1-217ENST00000543205 ATXN8Q156A1 80 aa2.91□□□□□ -1.94
CLIP1-217ENST00000543205 RETNLBQ9BQ08 111 aa2.91□□□□□ -1.94
CLIP1-217ENST00000543205 TNXBP22105 4242 aa2.9□□□□□ -1.94
CLIP1-217ENST00000543205 Q6JHZ5 121 aa2.9□□□□□ -1.94
CLIP1-217ENST00000543205 TCL1BO95988 128 aa2.9□□□□□ -1.95
CLIP1-217ENST00000543205 A0A0G2JQZ4 141 aa2.89□□□□□ -1.95
CLIP1-217ENST00000543205 RPS29P62273 56 aaKnown RBP2.89□□□□□ -1.95
CLIP1-217ENST00000543205 FP248Q71RG6 208 aaPredicted RBP2.89□□□□□ -1.95
CLIP1-217ENST00000543205 A0A1W2PPM0 123 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 A6NN06 94 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 BAALC-AS2P0C853 105 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 IGFL1Q6UW32 110 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 LIMD2Q9BT23 127 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 LRP2P98164 4655 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 TRAV7A0A075B6U4 112 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 DSCR8Q96T75 97 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 SERP1Q9Y6X1 66 aa2.88□□□□□ -1.95
CLIP1-217ENST00000543205 MT-ATP8P03928 68 aa2.87□□□□□ -1.95
CLIP1-217ENST00000543205 Q6ZQT0 140 aa2.86□□□□□ -1.95
CLIP1-217ENST00000543205 TRBV7-7A0A0K0K1E9 115 aa2.86□□□□□ -1.95
CLIP1-217ENST00000543205 SPCS1Q9Y6A9 102 aa2.86□□□□□ -1.95
CLIP1-217ENST00000543205 H3BPC8 53 aa2.85□□□□□ -1.95
CLIP1-217ENST00000543205 ROMO1P60602 79 aa2.85□□□□□ -1.95
CLIP1-217ENST00000543205 RBM3P98179 157 aaKnown RBP2.85□□□□□ -1.95
CLIP1-217ENST00000543205 JMJD7-PLA2G4BH0Y9G9 81 aa2.84□□□□□ -1.95
CLIP1-217ENST00000543205 CCKP06307 115 aa2.83□□□□□ -1.96
CLIP1-217ENST00000543205 A0A087WSZ3 146 aa2.83□□□□□ -1.96
CLIP1-217ENST00000543205 TRBV7-4A0A0J9YYF1 115 aa2.83□□□□□ -1.96
CLIP1-217ENST00000543205 A0A1W2PNM2 257 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms