RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 A0A1B0GVX0 72 aa8.04□□□□□ -1.12
PTPN1-202ENST00000541713 ZNF706Q9Y5V0 76 aaPredicted RBP8.02□□□□□ -1.12
PTPN1-202ENST00000541713 IGLV7-43P04211 117 aa8.02□□□□□ -1.13
PTPN1-202ENST00000541713 COA5Q86WW8 74 aa8.02□□□□□ -1.13
PTPN1-202ENST00000541713 Q5W150 140 aa8□□□□□ -1.13
PTPN1-202ENST00000541713 Q6ZR54 194 aa8□□□□□ -1.13
PTPN1-202ENST00000541713 MRPL34Q9BQ48 92 aaKnown RBP8□□□□□ -1.13
PTPN1-202ENST00000541713 PLAC8Q9NZF1 115 aa7.98□□□□□ -1.13
PTPN1-202ENST00000541713 PRR26Q8N8Z3 221 aa7.97□□□□□ -1.13
PTPN1-202ENST00000541713 Q8N9P0 234 aaPredicted RBP7.97□□□□□ -1.13
PTPN1-202ENST00000541713 SMR3BP02814 79 aaPredicted RBP7.96□□□□□ -1.13
PTPN1-202ENST00000541713 CYP4F30PQ9H0H9 118 aa7.96□□□□□ -1.13
PTPN1-202ENST00000541713 A6NED7 52 aa7.96□□□□□ -1.14
PTPN1-202ENST00000541713 C1orf195Q5TG92 126 aa7.95□□□□□ -1.14
PTPN1-202ENST00000541713 KRTAP10-1P60331 282 aa7.95□□□□□ -1.14
PTPN1-202ENST00000541713 HYDINQ4G0P3 5121 aa7.94□□□□□ -1.14
PTPN1-202ENST00000541713 LRP1BQ9NZR2 4599 aa7.93□□□□□ -1.14
PTPN1-202ENST00000541713 LINC00483Q53H64 154 aa7.93□□□□□ -1.14
PTPN1-202ENST00000541713 Q1T7F1 81 aa7.93□□□□□ -1.14
PTPN1-202ENST00000541713 IGKV2D-30A0A075B6S6 120 aa7.91□□□□□ -1.14
PTPN1-202ENST00000541713 IGKV2-30P06310 120 aa7.91□□□□□ -1.14
PTPN1-202ENST00000541713 Q5VV11 94 aa7.91□□□□□ -1.14
PTPN1-202ENST00000541713 DYNC2H1Q8NCM8 4307 aaKnown RBP7.9□□□□□ -1.15
PTPN1-202ENST00000541713 TP53AIP1Q9HCN2 124 aa7.89□□□□□ -1.15
PTPN1-202ENST00000541713 IGLV7-46A0A075B6I9 117 aa7.88□□□□□ -1.15
PTPN1-202ENST00000541713 HRES1P13985 223 aa7.88□□□□□ -1.15
PTPN1-202ENST00000541713 SEC61GP60059 68 aa7.88□□□□□ -1.15
PTPN1-202ENST00000541713 PMAIP1Q13794 54 aa7.88□□□□□ -1.15
PTPN1-202ENST00000541713 LINC00313P59037 77 aa7.87□□□□□ -1.15
PTPN1-202ENST00000541713 H3BPC8 53 aa7.87□□□□□ -1.15
PTPN1-202ENST00000541713 KRTAP13-2Q52LG2 175 aa7.86□□□□□ -1.15
PTPN1-202ENST00000541713 PLA2G1BP04054 148 aaKnown RBP7.86□□□□□ -1.15
PTPN1-202ENST00000541713 SPANXA2-OT1Q8N9U9 137 aa7.86□□□□□ -1.15
PTPN1-202ENST00000541713 SPINK1P00995 79 aa7.85□□□□□ -1.15
PTPN1-202ENST00000541713 V9GYY9 64 aa7.84□□□□□ -1.15
PTPN1-202ENST00000541713 DNAH5Q8TE73 4624 aa7.83□□□□□ -1.16
PTPN1-202ENST00000541713 FLG2Q5D862 2391 aaPredicted RBP7.81□□□□□ -1.16
PTPN1-202ENST00000541713 DMBT1Q9UGM3 2413 aaPredicted RBP7.8□□□□□ -1.16
PTPN1-202ENST00000541713 LIMD2Q9BT23 127 aa7.8□□□□□ -1.16
PTPN1-202ENST00000541713 SPINK7P58062 85 aa7.79□□□□□ -1.16
PTPN1-202ENST00000541713 TYMSOSQ8TAI1 123 aa7.78□□□□□ -1.16
PTPN1-202ENST00000541713 ALMS1Q8TCU4 4167 aa7.78□□□□□ -1.16
PTPN1-202ENST00000541713 PKHD1P08F94 4074 aa7.78□□□□□ -1.16
PTPN1-202ENST00000541713 LCA10Q71F78 164 aa7.78□□□□□ -1.16
PTPN1-202ENST00000541713 C9orf92A6NGG3 77 aa7.77□□□□□ -1.16
PTPN1-202ENST00000541713 ASB16-AS1Q495Z4 193 aa7.77□□□□□ -1.17
PTPN1-202ENST00000541713 SSBP3-AS1Q7Z2R9 100 aa7.77□□□□□ -1.17
PTPN1-202ENST00000541713 VPS13BQ7Z7G8 4022 aa7.77□□□□□ -1.17
PTPN1-202ENST00000541713 FAT2Q9NYQ8 4349 aa7.76□□□□□ -1.17
PTPN1-202ENST00000541713 LOC101927531A0A1B0GV80 90 aa7.75□□□□□ -1.17
PTPN1-202ENST00000541713 Q8N1X5 172 aa7.74□□□□□ -1.17
PTPN1-202ENST00000541713 FAT1Q14517 4588 aa7.74□□□□□ -1.17
PTPN1-202ENST00000541713 ACYP2P14621 99 aa7.68□□□□□ -1.18
PTPN1-202ENST00000541713 C7orf65Q6ZTY9 151 aa7.68□□□□□ -1.18
PTPN1-202ENST00000541713 KRTAP1-4P0C5Y4 121 aa7.68□□□□□ -1.18
PTPN1-202ENST00000541713 FAM229AH3BQW9 127 aa7.67□□□□□ -1.18
PTPN1-202ENST00000541713 C8orf87E5RJ46 101 aa7.65□□□□□ -1.19
PTPN1-202ENST00000541713 Q75L30 129 aa7.64□□□□□ -1.19
PTPN1-202ENST00000541713 KRTAP13-3Q3SY46 172 aa7.63□□□□□ -1.19
PTPN1-202ENST00000541713 LINC01558Q9Y6Z2 57 aa7.63□□□□□ -1.19
PTPN1-202ENST00000541713 A0A1B0GU69 56 aa7.61□□□□□ -1.19
PTPN1-202ENST00000541713 LINC00304Q8N9R0 145 aa7.6□□□□□ -1.19
PTPN1-202ENST00000541713 PKD1P98161 4303 aa7.6□□□□□ -1.19
PTPN1-202ENST00000541713 Q6ZSA8 131 aa7.59□□□□□ -1.19
PTPN1-202ENST00000541713 KRTAP16-1A8MUX0 517 aa7.55□□□□□ -1.2
PTPN1-202ENST00000541713 CDC42SE1Q9NRR8 79 aa7.55□□□□□ -1.2
PTPN1-202ENST00000541713 DMAC1Q96GE9 116 aa7.54□□□□□ -1.2
PTPN1-202ENST00000541713 PRAC1Q96KF2 57 aa7.54□□□□□ -1.2
PTPN1-202ENST00000541713 DYNC1H1Q14204 4646 aaKnown RBP7.53□□□□□ -1.2
PTPN1-202ENST00000541713 ATP11AUNQ6ZP68 121 aa7.53□□□□□ -1.2
PTPN1-202ENST00000541713 MYCBP2O75592 4640 aa7.51□□□□□ -1.21
PTPN1-202ENST00000541713 ADM2Q7Z4H4 148 aa7.5□□□□□ -1.21
PTPN1-202ENST00000541713 SACSQ9NZJ4 4579 aa7.48□□□□□ -1.21
PTPN1-202ENST00000541713 KMT2CQ8NEZ4 4911 aaKnown RBP7.46□□□□□ -1.21
PTPN1-202ENST00000541713 LRP1Q07954 4544 aaKnown RBP7.45□□□□□ -1.22
PTPN1-202ENST00000541713 KTN1-AS1Q86SY8 53 aa7.44□□□□□ -1.22
PTPN1-202ENST00000541713 A6NN06 94 aa7.43□□□□□ -1.22
PTPN1-202ENST00000541713 MIR22HGQ0VDD5 57 aa7.42□□□□□ -1.22
PTPN1-202ENST00000541713 RBM12B-AS1Q9P1G2 102 aa7.4□□□□□ -1.23
PTPN1-202ENST00000541713 APOBP04114 4563 aaKnown RBP7.38□□□□□ -1.23
PTPN1-202ENST00000541713 UQCR11O14957 56 aa7.37□□□□□ -1.23
PTPN1-202ENST00000541713 SPATA8Q6RVD6 105 aa7.3□□□□□ -1.24
PTPN1-202ENST00000541713 FAT3Q8TDW7 4589 aa7.3□□□□□ -1.24
PTPN1-202ENST00000541713 CRIPTQ9P021 101 aa7.29□□□□□ -1.24
PTPN1-202ENST00000541713 KRTAP3-1Q9BYR8 98 aa7.26□□□□□ -1.25
PTPN1-202ENST00000541713 KIAA1109Q2LD37 5005 aa7.24□□□□□ -1.25
PTPN1-202ENST00000541713 A0A1B0GVY2 172 aa7.22□□□□□ -1.25
PTPN1-202ENST00000541713 J3QL48 77 aa7.22□□□□□ -1.25
PTPN1-202ENST00000541713 RYR2Q92736 4967 aa7.21□□□□□ -1.26
PTPN1-202ENST00000541713 A0A0D9SG42 100 aa7.21□□□□□ -1.26
PTPN1-202ENST00000541713 Q5VSD8 79 aa7.21□□□□□ -1.26
PTPN1-202ENST00000541713 KRTAP10-4P60372 401 aaPredicted RBP7.2□□□□□ -1.26
PTPN1-202ENST00000541713 A8MUU9 505 aa7.18□□□□□ -1.26
PTPN1-202ENST00000541713 CSAG1Q6PB30 78 aa7.18□□□□□ -1.26
PTPN1-202ENST00000541713 HSPG2P98160 4391 aa7.17□□□□□ -1.26
PTPN1-202ENST00000541713 A0A1B0GU33 70 aa7.17□□□□□ -1.26
PTPN1-202ENST00000541713 C20orf166-AS1Q96NR2 134 aa7.17□□□□□ -1.26
PTPN1-202ENST00000541713 H0YAA0 97 aa7.15□□□□□ -1.26
PTPN1-202ENST00000541713 PKHD1L1Q86WI1 4243 aa7.14□□□□□ -1.27
PTPN1-202ENST00000541713 RYR3Q15413 4870 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms