RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 NBPF19A0A087WUL8 3843 aa3.97□□□□□ -1.77
USP28-207ENST00000538475 CASC10Q5T4H9 136 aa3.96□□□□□ -1.78
USP28-207ENST00000538475 CACNA1AO00555 2505 aa3.95□□□□□ -1.78
USP28-207ENST00000538475 INAFM1C9JVW0 142 aa3.95□□□□□ -1.78
USP28-207ENST00000538475 HIVEP1P15822 2718 aa3.94□□□□□ -1.78
USP28-207ENST00000538475 IGSF10Q6WRI0 2623 aa3.94□□□□□ -1.78
USP28-207ENST00000538475 CENPEQ02224 2701 aa3.93□□□□□ -1.78
USP28-207ENST00000538475 ZNF861PO60384 105 aa3.93□□□□□ -1.78
USP28-207ENST00000538475 UBR5O95071 2799 aaPredicted RBP3.93□□□□□ -1.78
USP28-207ENST00000538475 NIPBLQ6KC79 2804 aaeCLIP3.92□□□□□ -1.78
USP28-207ENST00000538475 IGLV7-43P04211 117 aa3.92□□□□□ -1.78
USP28-207ENST00000538475 CHTF8P0CG12 524 aa3.92□□□□□ -1.78
USP28-207ENST00000538475 Q5W150 140 aa3.92□□□□□ -1.78
USP28-207ENST00000538475 CSAG1Q6PB30 78 aa3.92□□□□□ -1.78
USP28-207ENST00000538475 ADM2Q7Z4H4 148 aa3.92□□□□□ -1.78
USP28-207ENST00000538475 ANK3Q12955 4377 aaKnown RBP3.92□□□□□ -1.78
USP28-207ENST00000538475 ACANP16112 2415 aa3.91□□□□□ -1.78
USP28-207ENST00000538475 KRTAP2-2Q9BYT5 123 aa3.91□□□□□ -1.78
USP28-207ENST00000538475 KRTAP10-7P60409 375 aaPredicted RBP3.9□□□□□ -1.79
USP28-207ENST00000538475 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.79
USP28-207ENST00000538475 SSBP3-AS1Q7Z2R9 100 aa3.9□□□□□ -1.79
USP28-207ENST00000538475 NOTCH2NLQ7Z3S9 236 aa3.9□□□□□ -1.79
USP28-207ENST00000538475 KRTAP11-1Q8IUC1 163 aa3.9□□□□□ -1.79
USP28-207ENST00000538475 IGLV9-49A0A0B4J1Y8 123 aa3.89□□□□□ -1.79
USP28-207ENST00000538475 LY6G6CO95867 125 aa3.89□□□□□ -1.79
USP28-207ENST00000538475 KRTAP25-1Q3LHN0 102 aa3.88□□□□□ -1.79
USP28-207ENST00000538475 ZNF462Q96JM2 2506 aa3.87□□□□□ -1.79
USP28-207ENST00000538475 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
USP28-207ENST00000538475 CSMD2Q7Z408 3487 aa3.87□□□□□ -1.79
USP28-207ENST00000538475 ROMO1P60602 79 aa3.86□□□□□ -1.79
USP28-207ENST00000538475 C1orf134Q5TEV5 83 aa3.86□□□□□ -1.79
USP28-207ENST00000538475 VWFP04275 2813 aa3.86□□□□□ -1.79
USP28-207ENST00000538475 TEP1Q99973 2627 aaKnown RBP3.86□□□□□ -1.79
USP28-207ENST00000538475 A8MUU9 505 aa3.85□□□□□ -1.79
USP28-207ENST00000538475 K7EIL1 84 aa3.85□□□□□ -1.79
USP28-207ENST00000538475 SPACA4Q8TDM5 124 aa3.85□□□□□ -1.79
USP28-207ENST00000538475 OTOGQ6ZRI0 2925 aa3.84□□□□□ -1.79
USP28-207ENST00000538475 KRTAP10-6P60371 365 aaPredicted RBP3.84□□□□□ -1.79
USP28-207ENST00000538475 KRTAP5-11Q6L8G4 156 aa3.84□□□□□ -1.79
USP28-207ENST00000538475 ANAPC11Q9NYG5 84 aa3.84□□□□□ -1.79
USP28-207ENST00000538475 IGLV5-52A0A0A0MRZ9 124 aa3.83□□□□□ -1.8
USP28-207ENST00000538475 PDZD2O15018 2839 aa3.83□□□□□ -1.8
USP28-207ENST00000538475 DNAH1Q9P2D7 4330 aa3.82□□□□□ -1.8
USP28-207ENST00000538475 MT3P25713 68 aa3.82□□□□□ -1.8
USP28-207ENST00000538475 PKD1L1Q8TDX9 2849 aa3.81□□□□□ -1.8
USP28-207ENST00000538475 K7ERS5 55 aa3.81□□□□□ -1.8
USP28-207ENST00000538475 UBE2DNLQ8IWF7 75 aa3.81□□□□□ -1.8
USP28-207ENST00000538475 HELZ2Q9BYK8 2649 aaKnown RBP3.8□□□□□ -1.8
USP28-207ENST00000538475 TENM3Q9P273 2699 aa3.8□□□□□ -1.8
USP28-207ENST00000538475 ATRQ13535 2644 aa3.79□□□□□ -1.8
USP28-207ENST00000538475 KRTAP16-1A8MUX0 517 aa3.79□□□□□ -1.8
USP28-207ENST00000538475 SPINK6Q6UWN8 80 aa3.79□□□□□ -1.8
USP28-207ENST00000538475 PSORS1C2Q9UIG4 136 aa3.79□□□□□ -1.8
USP28-207ENST00000538475 BAHCC1Q9P281 2608 aa3.78□□□□□ -1.8
USP28-207ENST00000538475 PANO1I0J062 215 aa3.78□□□□□ -1.8
USP28-207ENST00000538475 APLNQ9ULZ1 77 aa3.78□□□□□ -1.8
USP28-207ENST00000538475 HECTD1Q9ULT8 2610 aa3.77□□□□□ -1.81
USP28-207ENST00000538475 NSD1Q96L73 2696 aaPredicted RBP3.77□□□□□ -1.81
USP28-207ENST00000538475 NBDYA0A0U1RRE5 68 aa3.77□□□□□ -1.81
USP28-207ENST00000538475 Q6ZRN7 208 aaPredicted RBP3.77□□□□□ -1.81
USP28-207ENST00000538475 LINC00304Q8N9R0 145 aa3.77□□□□□ -1.81
USP28-207ENST00000538475 USP24Q9UPU5 2620 aa3.76□□□□□ -1.81
USP28-207ENST00000538475 SMR3AQ99954 134 aa3.76□□□□□ -1.81
USP28-207ENST00000538475 ZNF469Q96JG9 3925 aaPredicted RBP3.76□□□□□ -1.81
USP28-207ENST00000538475 SRRM2Q9UQ35 2752 aaKnown RBP3.75□□□□□ -1.81
USP28-207ENST00000538475 A0A1B0GU33 70 aa3.75□□□□□ -1.81
USP28-207ENST00000538475 Q6ZSA8 131 aa3.75□□□□□ -1.81
USP28-207ENST00000538475 FASNP49327 2511 aaKnown RBP3.75□□□□□ -1.81
USP28-207ENST00000538475 ITPR2Q14571 2701 aa3.74□□□□□ -1.81
USP28-207ENST00000538475 H0YAA0 97 aa3.74□□□□□ -1.81
USP28-207ENST00000538475 TENM4Q6N022 2769 aa3.74□□□□□ -1.81
USP28-207ENST00000538475 CIRBP-AS1Q8TBR5 109 aa3.74□□□□□ -1.81
USP28-207ENST00000538475 H1FX-AS1Q4G0G2 97 aa3.73□□□□□ -1.81
USP28-207ENST00000538475 TENM1Q9UKZ4 2725 aa3.73□□□□□ -1.81
USP28-207ENST00000538475 J3QKU1 62 aa3.72□□□□□ -1.81
USP28-207ENST00000538475 MAST4O15021 2626 aa3.72□□□□□ -1.81
USP28-207ENST00000538475 FLNBO75369 2602 aaKnown RBP3.72□□□□□ -1.81
USP28-207ENST00000538475 A0A087WTM6 91 aa3.71□□□□□ -1.82
USP28-207ENST00000538475 COX6B2Q6YFQ2 88 aa3.71□□□□□ -1.82
USP28-207ENST00000538475 NUPR2A6NF83 97 aa3.7□□□□□ -1.82
USP28-207ENST00000538475 RPS29P62273 56 aaKnown RBP3.7□□□□□ -1.82
USP28-207ENST00000538475 DNAH3Q8TD57 4116 aa3.68□□□□□ -1.82
USP28-207ENST00000538475 CUBNO60494 3623 aa3.67□□□□□ -1.82
USP28-207ENST00000538475 SPINK1P00995 79 aa3.66□□□□□ -1.82
USP28-207ENST00000538475 LCE1EQ5T753 118 aa3.66□□□□□ -1.82
USP28-207ENST00000538475 P0C880 135 aa3.65□□□□□ -1.83
USP28-207ENST00000538475 NBEAL1Q6ZS30 2694 aa3.65□□□□□ -1.83
USP28-207ENST00000538475 KRTAP24-1Q3LI83 254 aa3.64□□□□□ -1.83
USP28-207ENST00000538475 FBN1P35555 2871 aaKnown RBP3.63□□□□□ -1.83
USP28-207ENST00000538475 RPL37P61927 97 aaKnown RBP3.62□□□□□ -1.83
USP28-207ENST00000538475 KRTAP13-2Q52LG2 175 aa3.62□□□□□ -1.83
USP28-207ENST00000538475 TYMSOSQ8TAI1 123 aa3.62□□□□□ -1.83
USP28-207ENST00000538475 DYNC2H1Q8NCM8 4307 aaKnown RBP3.62□□□□□ -1.83
USP28-207ENST00000538475 ANK2Q01484 3957 aa3.61□□□□□ -1.83
USP28-207ENST00000538475 MEGF8Q7Z7M0 2845 aa3.61□□□□□ -1.83
USP28-207ENST00000538475 SEC61BP60468 96 aaKnown RBP3.6□□□□□ -1.83
USP28-207ENST00000538475 C20orf166-AS1Q96NR2 134 aa3.6□□□□□ -1.83
USP28-207ENST00000538475 SPINT4Q6UDR6 99 aa3.59□□□□□ -1.83
USP28-207ENST00000538475 NOTCH1P46531 2555 aa3.59□□□□□ -1.83
USP28-207ENST00000538475 TRRAPQ9Y4A5 3859 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms