RNA–Protein interactions for RNA: ENST00000536717.5

TNFRSF1A-209, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,503 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-209ENST00000536717 Q96NJ1 140 aa9.69□□□□□ -0.86
TNFRSF1A-209ENST00000536717 LINC00472Q9H8W2 130 aa9.67□□□□□ -0.86
TNFRSF1A-209ENST00000536717 IGKV4-1P06312 121 aa9.65□□□□□ -0.86
TNFRSF1A-209ENST00000536717 PCOTHQ58A44 107 aa9.65□□□□□ -0.86
TNFRSF1A-209ENST00000536717 SIGMAR1Q99720 223 aa9.65□□□□□ -0.86
TNFRSF1A-209ENST00000536717 NREPQ16612 68 aa9.64□□□□□ -0.87
TNFRSF1A-209ENST00000536717 DEFB116Q30KQ4 102 aa9.63□□□□□ -0.87
TNFRSF1A-209ENST00000536717 J3KT08 172 aa9.61□□□□□ -0.87
TNFRSF1A-209ENST00000536717 RPL37P61927 97 aaKnown RBP9.56□□□□□ -0.88
TNFRSF1A-209ENST00000536717 KRTAP19-2Q3LHN2 52 aa9.55□□□□□ -0.88
TNFRSF1A-209ENST00000536717 LCE2CQ5TA81 110 aa9.55□□□□□ -0.88
TNFRSF1A-209ENST00000536717 Q6ZVQ6 151 aa9.55□□□□□ -0.88
TNFRSF1A-209ENST00000536717 UBL5Q9BZL1 73 aa9.55□□□□□ -0.88
TNFRSF1A-209ENST00000536717 LINC00846Q9NV44 126 aa9.55□□□□□ -0.88
TNFRSF1A-209ENST00000536717 KRTAP9-2Q9BYQ4 174 aa9.54□□□□□ -0.88
TNFRSF1A-209ENST00000536717 NDUFB1O75438 58 aa9.53□□□□□ -0.88
TNFRSF1A-209ENST00000536717 LINC00643Q86TS7 51 aa9.51□□□□□ -0.89
TNFRSF1A-209ENST00000536717 IGHV6-1A0A0B4J1U7 121 aa9.51□□□□□ -0.89
TNFRSF1A-209ENST00000536717 A0A1B0GVX0 72 aa9.51□□□□□ -0.89
TNFRSF1A-209ENST00000536717 A8MWP4 228 aa9.51□□□□□ -0.89
TNFRSF1A-209ENST00000536717 BPY2O14599 106 aa9.51□□□□□ -0.89
TNFRSF1A-209ENST00000536717 LINC00313P59037 77 aa9.5□□□□□ -0.89
TNFRSF1A-209ENST00000536717 MT-ATP8P03928 68 aa9.49□□□□□ -0.89
TNFRSF1A-209ENST00000536717 DSCR10P59022 87 aa9.49□□□□□ -0.89
TNFRSF1A-209ENST00000536717 LCE2DQ5TA82 110 aaPredicted RBP9.48□□□□□ -0.89
TNFRSF1A-209ENST00000536717 C8orf87E5RJ46 101 aa9.47□□□□□ -0.89
TNFRSF1A-209ENST00000536717 IGKV3D-7A0A0C4DH55 119 aa9.46□□□□□ -0.9
TNFRSF1A-209ENST00000536717 SCGB1A1P11684 91 aa9.46□□□□□ -0.9
TNFRSF1A-209ENST00000536717 PCP4P48539 62 aa9.46□□□□□ -0.9
TNFRSF1A-209ENST00000536717 NOTCH2NLQ7Z3S9 236 aa9.43□□□□□ -0.9
TNFRSF1A-209ENST00000536717 PRR15Q8IV56 129 aa9.43□□□□□ -0.9
TNFRSF1A-209ENST00000536717 IMUPQ9GZP8 106 aa9.43□□□□□ -0.9
TNFRSF1A-209ENST00000536717 ATP5EP2Q5VTU8 51 aa9.42□□□□□ -0.9
TNFRSF1A-209ENST00000536717 MT1HP80294 61 aa9.41□□□□□ -0.9
TNFRSF1A-209ENST00000536717 Q75L30 129 aa9.41□□□□□ -0.9
TNFRSF1A-209ENST00000536717 K7EQZ3 153 aa9.41□□□□□ -0.9
TNFRSF1A-209ENST00000536717 C8orf17Q9NRJ1 99 aa9.39□□□□□ -0.91
TNFRSF1A-209ENST00000536717 KRTAP16-1A8MUX0 517 aa9.38□□□□□ -0.91
TNFRSF1A-209ENST00000536717 C20orf166-AS1Q96NR2 134 aa9.38□□□□□ -0.91
TNFRSF1A-209ENST00000536717 FLGP20930 4061 aaPredicted RBP9.37□□□□□ -0.91
TNFRSF1A-209ENST00000536717 CXCL6P80162 114 aa9.36□□□□□ -0.91
TNFRSF1A-209ENST00000536717 A8MUU9 505 aa9.36□□□□□ -0.91
TNFRSF1A-209ENST00000536717 Q8N9L7 120 aa9.36□□□□□ -0.91
TNFRSF1A-209ENST00000536717 ATP11AUNQ6ZP68 121 aa9.35□□□□□ -0.91
TNFRSF1A-209ENST00000536717 MMP24-AS1A0A0U1RRL7 71 aa9.32□□□□□ -0.92
TNFRSF1A-209ENST00000536717 hDV103S1A0JD37 113 aa9.3□□□□□ -0.92
TNFRSF1A-209ENST00000536717 TMEM254Q8TBM7 123 aa9.29□□□□□ -0.92
TNFRSF1A-209ENST00000536717 COX6B2Q6YFQ2 88 aa9.28□□□□□ -0.92
TNFRSF1A-209ENST00000536717 MRPL34Q9BQ48 92 aaKnown RBP9.27□□□□□ -0.93
TNFRSF1A-209ENST00000536717 Q8N9P0 234 aaPredicted RBP9.26□□□□□ -0.93
TNFRSF1A-209ENST00000536717 CASC2Q6XLA1 102 aa9.26□□□□□ -0.93
TNFRSF1A-209ENST00000536717 WFDC13Q8IUB5 93 aa9.26□□□□□ -0.93
TNFRSF1A-209ENST00000536717 HCG22E2RYF7 251 aa9.24□□□□□ -0.93
TNFRSF1A-209ENST00000536717 LORP23490 312 aaPredicted RBP9.23□□□□□ -0.93
TNFRSF1A-209ENST00000536717 KRTAP10-6P60371 365 aaPredicted RBP9.22□□□□□ -0.93
TNFRSF1A-209ENST00000536717 HIST1H4AP62805 103 aaKnown RBP9.21□□□□□ -0.93
TNFRSF1A-209ENST00000536717 NDUFS5O43920 106 aa9.21□□□□□ -0.94
TNFRSF1A-209ENST00000536717 KRTAP9-6A0A140TA67 174 aa9.19□□□□□ -0.94
TNFRSF1A-209ENST00000536717 FAM236AA0A1B0GUQ0 79 aa9.19□□□□□ -0.94
TNFRSF1A-209ENST00000536717 FAM236BA0A1B0GV22 79 aa9.19□□□□□ -0.94
TNFRSF1A-209ENST00000536717 M0R2T5 61 aa9.19□□□□□ -0.94
TNFRSF1A-209ENST00000536717 ZCCHC13Q8WW36 166 aaKnown RBP9.17□□□□□ -0.94
TNFRSF1A-209ENST00000536717 KRTAP3-3Q9BYR6 98 aa9.15□□□□□ -0.94
TNFRSF1A-209ENST00000536717 KRTAP3-2Q9BYR7 98 aa9.15□□□□□ -0.94
TNFRSF1A-209ENST00000536717 A0A087WVE0 104 aa9.15□□□□□ -0.95
TNFRSF1A-209ENST00000536717 ATOX1O00244 68 aa9.13□□□□□ -0.95
TNFRSF1A-209ENST00000536717 ANAPC13Q9BS18 74 aa9.13□□□□□ -0.95
TNFRSF1A-209ENST00000536717 FSIP2Q5CZC0 6907 aa9.07□□□□□ -0.96
TNFRSF1A-209ENST00000536717 TP53AIP1Q9HCN2 124 aa9.05□□□□□ -0.96
TNFRSF1A-209ENST00000536717 SMIM20Q8N5G0 67 aa9.03□□□□□ -0.96
TNFRSF1A-209ENST00000536717 Q5W150 140 aa9.02□□□□□ -0.97
TNFRSF1A-209ENST00000536717 HRES1P13985 223 aa9□□□□□ -0.97
TNFRSF1A-209ENST00000536717 SPINK7P58062 85 aa9□□□□□ -0.97
TNFRSF1A-209ENST00000536717 SERP2Q8N6R1 65 aa9□□□□□ -0.97
TNFRSF1A-209ENST00000536717 CRCT1Q9UGL9 99 aa9□□□□□ -0.97
TNFRSF1A-209ENST00000536717 MPLKIPQ8TAP9 179 aa9□□□□□ -0.97
TNFRSF1A-209ENST00000536717 COX7CP15954 63 aa8.98□□□□□ -0.97
TNFRSF1A-209ENST00000536717 UQCRQO14949 82 aa8.97□□□□□ -0.97
TNFRSF1A-209ENST00000536717 TRAV7A0A075B6U4 112 aa8.96□□□□□ -0.97
TNFRSF1A-209ENST00000536717 FAM236DA0A1B0GTK5 79 aa8.94□□□□□ -0.98
TNFRSF1A-209ENST00000536717 FAM236CP0DP71 79 aa8.94□□□□□ -0.98
TNFRSF1A-209ENST00000536717 IGKV2D-30A0A075B6S6 120 aa8.93□□□□□ -0.98
TNFRSF1A-209ENST00000536717 IGKV2-30P06310 120 aa8.93□□□□□ -0.98
TNFRSF1A-209ENST00000536717 RBM12B-AS1Q9P1G2 102 aa8.93□□□□□ -0.98
TNFRSF1A-209ENST00000536717 C7orf65Q6ZTY9 151 aa8.92□□□□□ -0.98
TNFRSF1A-209ENST00000536717 KRTAP9-8Q9BYQ0 159 aa8.92□□□□□ -0.98
TNFRSF1A-209ENST00000536717 CCDC179H3BU77 68 aa8.91□□□□□ -0.98
TNFRSF1A-209ENST00000536717 TRAV22A0A0B4J277 110 aa8.9□□□□□ -0.98
TNFRSF1A-209ENST00000536717 OCR1Q9BZK8 76 aa8.9□□□□□ -0.98
TNFRSF1A-209ENST00000536717 H0Y9P7 68 aa8.83□□□□□ -1
TNFRSF1A-209ENST00000536717 LOC101927531A0A1B0GV80 90 aa8.8□□□□□ -1
TNFRSF1A-209ENST00000536717 MP68P56378 58 aa8.79□□□□□ -1
TNFRSF1A-209ENST00000536717 MT2AP02795 61 aa8.78□□□□□ -1
TNFRSF1A-209ENST00000536717 KLKP1Q107X0 134 aa8.78□□□□□ -1
TNFRSF1A-209ENST00000536717 C5orf47Q569G3 176 aa8.78□□□□□ -1
TNFRSF1A-209ENST00000536717 C20orf197Q8N268 126 aa8.77□□□□□ -1.01
TNFRSF1A-209ENST00000536717 CYP4F30PQ9H0H9 118 aa8.76□□□□□ -1.01
TNFRSF1A-209ENST00000536717 USH2AO75445 5202 aa8.74□□□□□ -1.01
TNFRSF1A-209ENST00000536717 C1orf64Q8NEQ6 169 aa8.74□□□□□ -1.01
TNFRSF1A-209ENST00000536717 LINC00208Q96KT6 92 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms