RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 A0A087WSZ3 146 aa8.61□□□□□ -1.03
CHMP4A-207ENST00000533523 KRTAP9-7A8MTY7 169 aa8.61□□□□□ -1.03
CHMP4A-207ENST00000533523 Q5XG85 94 aa8.61□□□□□ -1.03
CHMP4A-207ENST00000533523 A0A1B0GW54 56 aa8.6□□□□□ -1.03
CHMP4A-207ENST00000533523 LORP23490 312 aaPredicted RBP8.6□□□□□ -1.03
CHMP4A-207ENST00000533523 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.59□□□□□ -1.03
CHMP4A-207ENST00000533523 PCOTHQ58A44 107 aa8.59□□□□□ -1.03
CHMP4A-207ENST00000533523 J3QR89 54 aa8.58□□□□□ -1.04
CHMP4A-207ENST00000533523 C9orf92A6NGG3 77 aa8.57□□□□□ -1.04
CHMP4A-207ENST00000533523 FAM240AA0A1B0GVK7 77 aa8.56□□□□□ -1.04
CHMP4A-207ENST00000533523 SS18L2Q9UHA2 77 aa8.56□□□□□ -1.04
CHMP4A-207ENST00000533523 ACYP1P07311 99 aa8.55□□□□□ -1.04
CHMP4A-207ENST00000533523 LINC00846Q9NV44 126 aa8.55□□□□□ -1.04
CHMP4A-207ENST00000533523 USH2AO75445 5202 aa8.55□□□□□ -1.04
CHMP4A-207ENST00000533523 K7ERU9 68 aa8.53□□□□□ -1.04
CHMP4A-207ENST00000533523 KRTAP10-6P60371 365 aaPredicted RBP8.53□□□□□ -1.04
CHMP4A-207ENST00000533523 NREPQ16612 68 aa8.51□□□□□ -1.05
CHMP4A-207ENST00000533523 C1orf195Q5TG92 126 aa8.51□□□□□ -1.05
CHMP4A-207ENST00000533523 Q6ZVQ6 151 aa8.5□□□□□ -1.05
CHMP4A-207ENST00000533523 UBL5Q9BZL1 73 aa8.5□□□□□ -1.05
CHMP4A-207ENST00000533523 Q96NJ1 140 aa8.48□□□□□ -1.05
CHMP4A-207ENST00000533523 LINC00472Q9H8W2 130 aa8.48□□□□□ -1.05
CHMP4A-207ENST00000533523 M0R2T5 61 aa8.47□□□□□ -1.05
CHMP4A-207ENST00000533523 DEFB116Q30KQ4 102 aa8.45□□□□□ -1.06
CHMP4A-207ENST00000533523 COX6B2Q6YFQ2 88 aa8.43□□□□□ -1.06
CHMP4A-207ENST00000533523 IGKV4-1P06312 121 aa8.42□□□□□ -1.06
CHMP4A-207ENST00000533523 FCGBPQ9Y6R7 5405 aaPredicted RBP8.42□□□□□ -1.06
CHMP4A-207ENST00000533523 BPY2O14599 106 aa8.41□□□□□ -1.06
CHMP4A-207ENST00000533523 SIGMAR1Q99720 223 aa8.41□□□□□ -1.06
CHMP4A-207ENST00000533523 J3KT08 172 aa8.4□□□□□ -1.06
CHMP4A-207ENST00000533523 LINC00643Q86TS7 51 aa8.39□□□□□ -1.07
CHMP4A-207ENST00000533523 RPL37P61927 97 aaKnown RBP8.37□□□□□ -1.07
CHMP4A-207ENST00000533523 IGKV3D-7A0A0C4DH55 119 aa8.36□□□□□ -1.07
CHMP4A-207ENST00000533523 DSCR10P59022 87 aa8.36□□□□□ -1.07
CHMP4A-207ENST00000533523 ATP5EP2Q5VTU8 51 aa8.36□□□□□ -1.07
CHMP4A-207ENST00000533523 A8MWP4 228 aa8.35□□□□□ -1.07
CHMP4A-207ENST00000533523 CXCL6P80162 114 aa8.35□□□□□ -1.07
CHMP4A-207ENST00000533523 A0A1B0GVX0 72 aa8.32□□□□□ -1.08
CHMP4A-207ENST00000533523 NDUFB1O75438 58 aa8.32□□□□□ -1.08
CHMP4A-207ENST00000533523 Q8N9L7 120 aa8.32□□□□□ -1.08
CHMP4A-207ENST00000533523 K7EQZ3 153 aa8.31□□□□□ -1.08
CHMP4A-207ENST00000533523 PRR15Q8IV56 129 aa8.31□□□□□ -1.08
CHMP4A-207ENST00000533523 IGHV6-1A0A0B4J1U7 121 aa8.3□□□□□ -1.08
CHMP4A-207ENST00000533523 MT-ATP8P03928 68 aa8.28□□□□□ -1.08
CHMP4A-207ENST00000533523 NOTCH2NLQ7Z3S9 236 aa8.26□□□□□ -1.09
CHMP4A-207ENST00000533523 C8orf87E5RJ46 101 aa8.25□□□□□ -1.09
CHMP4A-207ENST00000533523 C8orf17Q9NRJ1 99 aa8.25□□□□□ -1.09
CHMP4A-207ENST00000533523 LINC00313P59037 77 aa8.24□□□□□ -1.09
CHMP4A-207ENST00000533523 HIST1H4AP62805 103 aaKnown RBP8.24□□□□□ -1.09
CHMP4A-207ENST00000533523 MACF1Q9UPN3 7388 aaKnown RBP8.23□□□□□ -1.09
CHMP4A-207ENST00000533523 Q75L30 129 aa8.23□□□□□ -1.09
CHMP4A-207ENST00000533523 SYNE2Q8WXH0 6885 aaKnown RBP8.23□□□□□ -1.09
CHMP4A-207ENST00000533523 MMP24-AS1A0A0U1RRL7 71 aa8.22□□□□□ -1.09
CHMP4A-207ENST00000533523 ATP11AUNQ6ZP68 121 aa8.2□□□□□ -1.1
CHMP4A-207ENST00000533523 A0A087WVE0 104 aa8.19□□□□□ -1.1
CHMP4A-207ENST00000533523 HCG22E2RYF7 251 aa8.18□□□□□ -1.1
CHMP4A-207ENST00000533523 WFDC13Q8IUB5 93 aa8.18□□□□□ -1.1
CHMP4A-207ENST00000533523 IMUPQ9GZP8 106 aa8.18□□□□□ -1.1
CHMP4A-207ENST00000533523 hDV103S1A0JD37 113 aa8.17□□□□□ -1.1
CHMP4A-207ENST00000533523 KRTAP16-1A8MUX0 517 aa8.17□□□□□ -1.1
CHMP4A-207ENST00000533523 CASC2Q6XLA1 102 aa8.16□□□□□ -1.1
CHMP4A-207ENST00000533523 C20orf166-AS1Q96NR2 134 aa8.16□□□□□ -1.1
CHMP4A-207ENST00000533523 TMEM254Q8TBM7 123 aa8.15□□□□□ -1.1
CHMP4A-207ENST00000533523 A8MUU9 505 aa8.13□□□□□ -1.11
CHMP4A-207ENST00000533523 MRPL34Q9BQ48 92 aaKnown RBP8.12□□□□□ -1.11
CHMP4A-207ENST00000533523 KRTAP9-8Q9BYQ0 159 aa8.1□□□□□ -1.11
CHMP4A-207ENST00000533523 KRTAP19-1Q8IUB9 90 aa8.08□□□□□ -1.12
CHMP4A-207ENST00000533523 Q8N9P0 234 aaPredicted RBP8.08□□□□□ -1.12
CHMP4A-207ENST00000533523 FAM236AA0A1B0GUQ0 79 aa8.06□□□□□ -1.12
CHMP4A-207ENST00000533523 FAM236BA0A1B0GV22 79 aa8.06□□□□□ -1.12
CHMP4A-207ENST00000533523 NDUFS5O43920 106 aa8.06□□□□□ -1.12
CHMP4A-207ENST00000533523 LCE2BO14633 110 aa8.01□□□□□ -1.13
CHMP4A-207ENST00000533523 SCGB1A1P11684 91 aa8.01□□□□□ -1.13
CHMP4A-207ENST00000533523 TP53AIP1Q9HCN2 124 aa7.97□□□□□ -1.13
CHMP4A-207ENST00000533523 ZCCHC13Q8WW36 166 aaKnown RBP7.96□□□□□ -1.14
CHMP4A-207ENST00000533523 OCR1Q9BZK8 76 aa7.96□□□□□ -1.14
CHMP4A-207ENST00000533523 ATOX1O00244 68 aa7.95□□□□□ -1.14
CHMP4A-207ENST00000533523 FAM236DA0A1B0GTK5 79 aa7.94□□□□□ -1.14
CHMP4A-207ENST00000533523 UQCRQO14949 82 aa7.94□□□□□ -1.14
CHMP4A-207ENST00000533523 FAM236CP0DP71 79 aa7.94□□□□□ -1.14
CHMP4A-207ENST00000533523 MT2AP02795 61 aa7.93□□□□□ -1.14
CHMP4A-207ENST00000533523 Q5W150 140 aa7.93□□□□□ -1.14
CHMP4A-207ENST00000533523 SMIM20Q8N5G0 67 aa7.91□□□□□ -1.14
CHMP4A-207ENST00000533523 TRAV7A0A075B6U4 112 aa7.89□□□□□ -1.15
CHMP4A-207ENST00000533523 TRAV22A0A0B4J277 110 aa7.88□□□□□ -1.15
CHMP4A-207ENST00000533523 MT1FP04733 61 aa7.88□□□□□ -1.15
CHMP4A-207ENST00000533523 H0Y9P7 68 aa7.86□□□□□ -1.15
CHMP4A-207ENST00000533523 KRTAP9-3Q9BYQ3 159 aa7.85□□□□□ -1.15
CHMP4A-207ENST00000533523 RBM12B-AS1Q9P1G2 102 aa7.85□□□□□ -1.15
CHMP4A-207ENST00000533523 KRTAP10-10P60014 251 aa7.84□□□□□ -1.15
CHMP4A-207ENST00000533523 SERP2Q8N6R1 65 aa7.84□□□□□ -1.15
CHMP4A-207ENST00000533523 C5orf47Q569G3 176 aa7.83□□□□□ -1.16
CHMP4A-207ENST00000533523 NEBP20929 6669 aa7.82□□□□□ -1.16
CHMP4A-207ENST00000533523 HRES1P13985 223 aa7.82□□□□□ -1.16
CHMP4A-207ENST00000533523 MP68P56378 58 aa7.81□□□□□ -1.16
CHMP4A-207ENST00000533523 ANAPC13Q9BS18 74 aa7.81□□□□□ -1.16
CHMP4A-207ENST00000533523 IGKV2D-30A0A075B6S6 120 aa7.8□□□□□ -1.16
CHMP4A-207ENST00000533523 IGKV2-30P06310 120 aa7.8□□□□□ -1.16
CHMP4A-207ENST00000533523 MPLKIPQ8TAP9 179 aa7.79□□□□□ -1.16
CHMP4A-207ENST00000533523 LINC00208Q96KT6 92 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms