RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 DSCR8Q96T75 97 aa8.88□□□□□ -0.99
PCF11-206ENST00000533018 A0A1B0GVX0 72 aa8.87□□□□□ -0.99
PCF11-206ENST00000533018 C8orf87E5RJ46 101 aa8.86□□□□□ -0.99
PCF11-206ENST00000533018 MPLKIPQ8TAP9 179 aa8.86□□□□□ -0.99
PCF11-206ENST00000533018 UQCR10Q9UDW1 63 aa8.84□□□□□ -0.99
PCF11-206ENST00000533018 MTURNQ8N3F0 131 aa8.83□□□□□ -1
PCF11-206ENST00000533018 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.82□□□□□ -1
PCF11-206ENST00000533018 KRTAP10-10P60014 251 aa8.82□□□□□ -1
PCF11-206ENST00000533018 C9JAW5 83 aa8.81□□□□□ -1
PCF11-206ENST00000533018 MT1FP04733 61 aa8.81□□□□□ -1
PCF11-206ENST00000533018 J3KT08 172 aa8.8□□□□□ -1
PCF11-206ENST00000533018 BAALC-AS2P0C853 105 aa8.79□□□□□ -1
PCF11-206ENST00000533018 ZCCHC13Q8WW36 166 aaKnown RBP8.79□□□□□ -1
PCF11-206ENST00000533018 KRTAP9-7A8MTY7 169 aa8.78□□□□□ -1
PCF11-206ENST00000533018 FCGBPQ9Y6R7 5405 aaPredicted RBP8.78□□□□□ -1
PCF11-206ENST00000533018 NDUFB1O75438 58 aa8.77□□□□□ -1.01
PCF11-206ENST00000533018 SPINK7P58062 85 aa8.77□□□□□ -1.01
PCF11-206ENST00000533018 C21orf62-AS1Q17RA5 79 aa8.77□□□□□ -1.01
PCF11-206ENST00000533018 LYRM7Q5U5X0 104 aa8.76□□□□□ -1.01
PCF11-206ENST00000533018 Q6ZQT0 140 aa8.75□□□□□ -1.01
PCF11-206ENST00000533018 LCE2BO14633 110 aa8.74□□□□□ -1.01
PCF11-206ENST00000533018 KRTAP9-3Q9BYQ3 159 aa8.72□□□□□ -1.01
PCF11-206ENST00000533018 TMA7Q9Y2S6 64 aaKnown RBP8.72□□□□□ -1.01
PCF11-206ENST00000533018 KRTAP19-1Q8IUB9 90 aa8.69□□□□□ -1.02
PCF11-206ENST00000533018 Q8N9P0 234 aaPredicted RBP8.69□□□□□ -1.02
PCF11-206ENST00000533018 SYNE2Q8WXH0 6885 aaKnown RBP8.69□□□□□ -1.02
PCF11-206ENST00000533018 C8orf17Q9NRJ1 99 aa8.68□□□□□ -1.02
PCF11-206ENST00000533018 JMJD7-PLA2G4BH0Y9G9 81 aa8.67□□□□□ -1.02
PCF11-206ENST00000533018 ATXN8Q156A1 80 aa8.67□□□□□ -1.02
PCF11-206ENST00000533018 MACF1Q9UPN3 7388 aaKnown RBP8.67□□□□□ -1.02
PCF11-206ENST00000533018 A8MWP4 228 aa8.66□□□□□ -1.02
PCF11-206ENST00000533018 WFDC13Q8IUB5 93 aa8.66□□□□□ -1.02
PCF11-206ENST00000533018 NAA38Q9BRA0 125 aaKnown RBP8.66□□□□□ -1.02
PCF11-206ENST00000533018 LOC110117498A0A087WWA1 95 aa8.63□□□□□ -1.03
PCF11-206ENST00000533018 IGKV3D-7A0A0C4DH55 119 aa8.63□□□□□ -1.03
PCF11-206ENST00000533018 A0A1B0GW54 56 aa8.62□□□□□ -1.03
PCF11-206ENST00000533018 Q6ZVQ6 151 aa8.62□□□□□ -1.03
PCF11-206ENST00000533018 M0R143 59 aa8.61□□□□□ -1.03
PCF11-206ENST00000533018 PDE6GP18545 87 aa8.61□□□□□ -1.03
PCF11-206ENST00000533018 C14orf132Q9NPU4 83 aa8.61□□□□□ -1.03
PCF11-206ENST00000533018 NREPQ16612 68 aa8.58□□□□□ -1.04
PCF11-206ENST00000533018 PRR15Q8IV56 129 aa8.56□□□□□ -1.04
PCF11-206ENST00000533018 LINC00846Q9NV44 126 aa8.56□□□□□ -1.04
PCF11-206ENST00000533018 MRPL34Q9BQ48 92 aaKnown RBP8.53□□□□□ -1.04
PCF11-206ENST00000533018 NDUFS5O43920 106 aa8.52□□□□□ -1.05
PCF11-206ENST00000533018 MMP24-AS1A0A0U1RRL7 71 aa8.51□□□□□ -1.05
PCF11-206ENST00000533018 TMEM254Q8TBM7 123 aa8.51□□□□□ -1.05
PCF11-206ENST00000533018 hDV103S1A0JD37 113 aa8.49□□□□□ -1.05
PCF11-206ENST00000533018 H1FX-AS1Q4G0G2 97 aa8.47□□□□□ -1.05
PCF11-206ENST00000533018 K7EQZ3 153 aa8.46□□□□□ -1.06
PCF11-206ENST00000533018 BATFQ16520 125 aa8.45□□□□□ -1.06
PCF11-206ENST00000533018 KRTAP19-6Q3LI70 58 aa8.45□□□□□ -1.06
PCF11-206ENST00000533018 IGKV2D-30A0A075B6S6 120 aa8.44□□□□□ -1.06
PCF11-206ENST00000533018 IGKV2-30P06310 120 aa8.44□□□□□ -1.06
PCF11-206ENST00000533018 BPY2O14599 106 aa8.41□□□□□ -1.06
PCF11-206ENST00000533018 H3BT86 120 aa8.37□□□□□ -1.07
PCF11-206ENST00000533018 C7orf65Q6ZTY9 151 aa8.37□□□□□ -1.07
PCF11-206ENST00000533018 TSTD3H0UI37 97 aa8.36□□□□□ -1.07
PCF11-206ENST00000533018 SMIM6P0DI80 62 aa8.36□□□□□ -1.07
PCF11-206ENST00000533018 Q5W150 140 aa8.36□□□□□ -1.07
PCF11-206ENST00000533018 C9orf118A6NHY6 69 aa8.32□□□□□ -1.08
PCF11-206ENST00000533018 HCG22E2RYF7 251 aa8.32□□□□□ -1.08
PCF11-206ENST00000533018 CASC2Q6XLA1 102 aa8.32□□□□□ -1.08
PCF11-206ENST00000533018 Q8N9L7 120 aa8.32□□□□□ -1.08
PCF11-206ENST00000533018 A0A1W2PPM0 123 aa8.3□□□□□ -1.08
PCF11-206ENST00000533018 C4orf26Q17RF5 130 aa8.29□□□□□ -1.08
PCF11-206ENST00000533018 TAX1BP3O14907 124 aa8.26□□□□□ -1.09
PCF11-206ENST00000533018 CXCL6P80162 114 aa8.24□□□□□ -1.09
PCF11-206ENST00000533018 C5orf47Q569G3 176 aa8.22□□□□□ -1.09
PCF11-206ENST00000533018 FAM236AA0A1B0GUQ0 79 aa8.21□□□□□ -1.1
PCF11-206ENST00000533018 FAM236BA0A1B0GV22 79 aa8.21□□□□□ -1.1
PCF11-206ENST00000533018 SPCS1Q9Y6A9 102 aa8.18□□□□□ -1.1
PCF11-206ENST00000533018 KRTAP6-3Q3LI67 103 aa8.17□□□□□ -1.1
PCF11-206ENST00000533018 UBL5Q9BZL1 73 aa8.16□□□□□ -1.1
PCF11-206ENST00000533018 S4R3F8 94 aa8.14□□□□□ -1.11
PCF11-206ENST00000533018 SMCPP49901 116 aaPredicted RBP8.12□□□□□ -1.11
PCF11-206ENST00000533018 C1orf64Q8NEQ6 169 aa8.11□□□□□ -1.11
PCF11-206ENST00000533018 CSAG1Q6PB30 78 aa8.1□□□□□ -1.11
PCF11-206ENST00000533018 KRTAP3-1Q9BYR8 98 aa8.1□□□□□ -1.11
PCF11-206ENST00000533018 A6NN06 94 aa8.07□□□□□ -1.12
PCF11-206ENST00000533018 LCA10Q71F78 164 aa8.07□□□□□ -1.12
PCF11-206ENST00000533018 NEBP20929 6669 aa8.07□□□□□ -1.12
PCF11-206ENST00000533018 Q5VV11 94 aa8.06□□□□□ -1.12
PCF11-206ENST00000533018 LOC105371267A0A1B0GV96 52 aa8.03□□□□□ -1.12
PCF11-206ENST00000533018 TP53AIP1Q9HCN2 124 aa8.02□□□□□ -1.13
PCF11-206ENST00000533018 MT1BP07438 61 aa8.01□□□□□ -1.13
PCF11-206ENST00000533018 PRO0461Q9UI25 63 aa8.01□□□□□ -1.13
PCF11-206ENST00000533018 MUC12Q9UKN1 5478 aa8.01□□□□□ -1.13
PCF11-206ENST00000533018 COL5A1-AS1Q5SY13 56 aa7.99□□□□□ -1.13
PCF11-206ENST00000533018 K7EP34 96 aa7.98□□□□□ -1.13
PCF11-206ENST00000533018 SPRR2GQ9BYE4 73 aa7.98□□□□□ -1.13
PCF11-206ENST00000533018 KRTAP19-8Q3LI54 63 aa7.96□□□□□ -1.14
PCF11-206ENST00000533018 KLKP1Q107X0 134 aa7.95□□□□□ -1.14
PCF11-206ENST00000533018 CYP4F30PQ9H0H9 118 aa7.89□□□□□ -1.15
PCF11-206ENST00000533018 KRTAP10-5P60370 271 aa7.87□□□□□ -1.15
PCF11-206ENST00000533018 GTF2H5Q6ZYL4 71 aa7.87□□□□□ -1.15
PCF11-206ENST00000533018 IMUPQ9GZP8 106 aa7.86□□□□□ -1.15
PCF11-206ENST00000533018 F8W1H4 67 aa7.84□□□□□ -1.15
PCF11-206ENST00000533018 ETDBQ3ZM63 59 aa7.84□□□□□ -1.15
PCF11-206ENST00000533018 A0A087WVE0 104 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms