RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 C7orf65Q6ZTY9 151 aa6.47□□□□□ -1.37
TRIM3-211ENST00000532542 COA5Q86WW8 74 aa6.46□□□□□ -1.37
TRIM3-211ENST00000532542 C9orf92A6NGG3 77 aa6.46□□□□□ -1.38
TRIM3-211ENST00000532542 PSPHP1O15172 72 aa6.46□□□□□ -1.38
TRIM3-211ENST00000532542 C4orf26Q17RF5 130 aa6.46□□□□□ -1.38
TRIM3-211ENST00000532542 Q5XG85 94 aa6.46□□□□□ -1.38
TRIM3-211ENST00000532542 IGLV7-46A0A075B6I9 117 aa6.44□□□□□ -1.38
TRIM3-211ENST00000532542 ZCCHC13Q8WW36 166 aaKnown RBP6.43□□□□□ -1.38
TRIM3-211ENST00000532542 A6NED7 52 aa6.43□□□□□ -1.38
TRIM3-211ENST00000532542 MEGF8Q7Z7M0 2845 aa6.43□□□□□ -1.38
TRIM3-211ENST00000532542 ATP11AUNQ6ZP68 121 aa6.42□□□□□ -1.38
TRIM3-211ENST00000532542 PRO0628Q9UI54 55 aa6.42□□□□□ -1.38
TRIM3-211ENST00000532542 DNAH9Q9NYC9 4486 aa6.42□□□□□ -1.38
TRIM3-211ENST00000532542 Q5VSD8 79 aa6.41□□□□□ -1.38
TRIM3-211ENST00000532542 RPS29P62273 56 aaKnown RBP6.41□□□□□ -1.38
TRIM3-211ENST00000532542 NOTCH2NLQ7Z3S9 236 aa6.41□□□□□ -1.38
TRIM3-211ENST00000532542 KRTAP1-4P0C5Y4 121 aa6.38□□□□□ -1.39
TRIM3-211ENST00000532542 ANK2Q01484 3957 aa6.38□□□□□ -1.39
TRIM3-211ENST00000532542 Q5W150 140 aa6.37□□□□□ -1.39
TRIM3-211ENST00000532542 COL7A1Q02388 2944 aa6.37□□□□□ -1.39
TRIM3-211ENST00000532542 HRES1P13985 223 aa6.35□□□□□ -1.39
TRIM3-211ENST00000532542 PMAIP1Q13794 54 aa6.35□□□□□ -1.39
TRIM3-211ENST00000532542 Q8N9P0 234 aaPredicted RBP6.34□□□□□ -1.39
TRIM3-211ENST00000532542 DNAH3Q8TD57 4116 aa6.34□□□□□ -1.4
TRIM3-211ENST00000532542 OXTP01178 125 aa6.33□□□□□ -1.4
TRIM3-211ENST00000532542 A0A1B0GU69 56 aa6.32□□□□□ -1.4
TRIM3-211ENST00000532542 A8MUN3 132 aa6.32□□□□□ -1.4
TRIM3-211ENST00000532542 DMBT1Q9UGM3 2413 aaPredicted RBP6.32□□□□□ -1.4
TRIM3-211ENST00000532542 Q1T7F1 81 aa6.3□□□□□ -1.4
TRIM3-211ENST00000532542 J3QL48 77 aa6.3□□□□□ -1.4
TRIM3-211ENST00000532542 A0A1B0GVY2 172 aa6.3□□□□□ -1.4
TRIM3-211ENST00000532542 FP248Q71RG6 208 aaPredicted RBP6.29□□□□□ -1.4
TRIM3-211ENST00000532542 CMYA5Q8N3K9 4069 aa6.28□□□□□ -1.4
TRIM3-211ENST00000532542 SRRM2Q9UQ35 2752 aaKnown RBP6.28□□□□□ -1.4
TRIM3-211ENST00000532542 PLECQ15149 4684 aaKnown RBP6.26□□□□□ -1.41
TRIM3-211ENST00000532542 Q8N1X5 172 aa6.26□□□□□ -1.41
TRIM3-211ENST00000532542 H3BS24 57 aa6.24□□□□□ -1.41
TRIM3-211ENST00000532542 FLG2Q5D862 2391 aaPredicted RBP6.22□□□□□ -1.41
TRIM3-211ENST00000532542 DMAC1Q96GE9 116 aa6.22□□□□□ -1.41
TRIM3-211ENST00000532542 SPINK7P58062 85 aa6.21□□□□□ -1.42
TRIM3-211ENST00000532542 K7ERS5 55 aa6.19□□□□□ -1.42
TRIM3-211ENST00000532542 LINC01558Q9Y6Z2 57 aa6.18□□□□□ -1.42
TRIM3-211ENST00000532542 VPS13DQ5THJ4 4388 aa6.17□□□□□ -1.42
TRIM3-211ENST00000532542 PRKDCP78527 4128 aaKnown RBP6.17□□□□□ -1.42
TRIM3-211ENST00000532542 DNHD1Q96M86 4753 aa6.16□□□□□ -1.42
TRIM3-211ENST00000532542 STARD9Q9P2P6 4700 aa6.16□□□□□ -1.42
TRIM3-211ENST00000532542 UQCR11O14957 56 aa6.15□□□□□ -1.43
TRIM3-211ENST00000532542 DNAH1Q9P2D7 4330 aa6.14□□□□□ -1.43
TRIM3-211ENST00000532542 Q75L30 129 aa6.13□□□□□ -1.43
TRIM3-211ENST00000532542 DNAH10Q8IVF4 4471 aa6.13□□□□□ -1.43
TRIM3-211ENST00000532542 KRTAP16-1A8MUX0 517 aa6.13□□□□□ -1.43
TRIM3-211ENST00000532542 A8MUU9 505 aa6.13□□□□□ -1.43
TRIM3-211ENST00000532542 C20orf166-AS1Q96NR2 134 aa6.13□□□□□ -1.43
TRIM3-211ENST00000532542 RBM12B-AS1Q9P1G2 102 aa6.12□□□□□ -1.43
TRIM3-211ENST00000532542 CSMD3Q7Z407 3707 aa6.12□□□□□ -1.43
TRIM3-211ENST00000532542 ALMS1Q8TCU4 4167 aa6.11□□□□□ -1.43
TRIM3-211ENST00000532542 Q5VV11 94 aa6.1□□□□□ -1.43
TRIM3-211ENST00000532542 MIR22HGQ0VDD5 57 aa6.07□□□□□ -1.44
TRIM3-211ENST00000532542 CDC42SE1Q9NRR8 79 aa6.07□□□□□ -1.44
TRIM3-211ENST00000532542 DYNC2H1Q8NCM8 4307 aaKnown RBP6.06□□□□□ -1.44
TRIM3-211ENST00000532542 KRTAP13-3Q3SY46 172 aa6.05□□□□□ -1.44
TRIM3-211ENST00000532542 COX6B2Q6YFQ2 88 aa6.05□□□□□ -1.44
TRIM3-211ENST00000532542 KRTAP10-8P60410 259 aa6.04□□□□□ -1.44
TRIM3-211ENST00000532542 RPL37P61927 97 aaKnown RBP6.04□□□□□ -1.44
TRIM3-211ENST00000532542 DNAH17Q9UFH2 4485 aa6.03□□□□□ -1.44
TRIM3-211ENST00000532542 SEC61BP60468 96 aaKnown RBP6.02□□□□□ -1.45
TRIM3-211ENST00000532542 KRTAP10-4P60372 401 aaPredicted RBP5.98□□□□□ -1.45
TRIM3-211ENST00000532542 S4R3F8 94 aa5.98□□□□□ -1.45
TRIM3-211ENST00000532542 DNAH11Q96DT5 4516 aa5.97□□□□□ -1.45
TRIM3-211ENST00000532542 A0A1B0GU33 70 aa5.96□□□□□ -1.46
TRIM3-211ENST00000532542 KMT2AQ03164 3969 aa5.96□□□□□ -1.46
TRIM3-211ENST00000532542 XP32Q5T750 250 aa5.95□□□□□ -1.46
TRIM3-211ENST00000532542 LYSTQ99698 3801 aa5.95□□□□□ -1.46
TRIM3-211ENST00000532542 DNAH7Q8WXX0 4024 aa5.94□□□□□ -1.46
TRIM3-211ENST00000532542 DNAH2Q9P225 4427 aa5.92□□□□□ -1.46
TRIM3-211ENST00000532542 DNAH5Q8TE73 4624 aa5.92□□□□□ -1.46
TRIM3-211ENST00000532542 CSAG1Q6PB30 78 aa5.92□□□□□ -1.46
TRIM3-211ENST00000532542 TPRXLQ17RH7 258 aa5.89□□□□□ -1.47
TRIM3-211ENST00000532542 KTN1-AS1Q86SY8 53 aa5.89□□□□□ -1.47
TRIM3-211ENST00000532542 H1FX-AS1Q4G0G2 97 aa5.87□□□□□ -1.47
TRIM3-211ENST00000532542 LCA10Q71F78 164 aa5.86□□□□□ -1.47
TRIM3-211ENST00000532542 DNAH6Q9C0G6 4158 aa5.85□□□□□ -1.47
TRIM3-211ENST00000532542 HECTD4Q9Y4D8 3996 aa5.82□□□□□ -1.48
TRIM3-211ENST00000532542 SPATA8Q6RVD6 105 aa5.82□□□□□ -1.48
TRIM3-211ENST00000532542 DYNC1H1Q14204 4646 aaKnown RBP5.81□□□□□ -1.48
TRIM3-211ENST00000532542 LRP1BQ9NZR2 4599 aa5.81□□□□□ -1.48
TRIM3-211ENST00000532542 A0A0D9SG42 100 aa5.8□□□□□ -1.48
TRIM3-211ENST00000532542 DNAH8Q96JB1 4490 aa5.8□□□□□ -1.48
TRIM3-211ENST00000532542 MT1HL1P0DM35 61 aa5.78□□□□□ -1.48
TRIM3-211ENST00000532542 A8MU10 97 aa5.73□□□□□ -1.49
TRIM3-211ENST00000532542 PRAC1Q96KF2 57 aa5.73□□□□□ -1.49
TRIM3-211ENST00000532542 ADM2Q7Z4H4 148 aa5.72□□□□□ -1.49
TRIM3-211ENST00000532542 SPINT4Q6UDR6 99 aa5.72□□□□□ -1.49
TRIM3-211ENST00000532542 LINC01554Q52M75 96 aa5.71□□□□□ -1.49
TRIM3-211ENST00000532542 FAT1Q14517 4588 aa5.7□□□□□ -1.5
TRIM3-211ENST00000532542 HYDINQ4G0P3 5121 aa5.7□□□□□ -1.5
TRIM3-211ENST00000532542 SACSQ9NZJ4 4579 aa5.7□□□□□ -1.5
TRIM3-211ENST00000532542 FAT2Q9NYQ8 4349 aa5.7□□□□□ -1.5
TRIM3-211ENST00000532542 A0A0A0MQY5 61 aa5.68□□□□□ -1.5
TRIM3-211ENST00000532542 R4GN34 69 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms