RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 IMUPQ9GZP8 106 aa8.06□□□□□ -1.12
CPSF1-206ENST00000531480 CDIP1Q9H305 208 aa8.05□□□□□ -1.12
CPSF1-206ENST00000531480 NDUFB1O75438 58 aa8.04□□□□□ -1.12
CPSF1-206ENST00000531480 Q96NJ1 140 aa7.97□□□□□ -1.13
CPSF1-206ENST00000531480 LINC00472Q9H8W2 130 aa7.96□□□□□ -1.14
CPSF1-206ENST00000531480 IGKV3D-7A0A0C4DH55 119 aa7.95□□□□□ -1.14
CPSF1-206ENST00000531480 IGKV4-1P06312 121 aa7.95□□□□□ -1.14
CPSF1-206ENST00000531480 HIST1H4AP62805 103 aaKnown RBP7.95□□□□□ -1.14
CPSF1-206ENST00000531480 XP32Q5T750 250 aa7.94□□□□□ -1.14
CPSF1-206ENST00000531480 A8MWP4 228 aa7.93□□□□□ -1.14
CPSF1-206ENST00000531480 MT-ATP8P03928 68 aa7.92□□□□□ -1.14
CPSF1-206ENST00000531480 MUC17Q685J3 4493 aa7.91□□□□□ -1.14
CPSF1-206ENST00000531480 SCGB1A1P11684 91 aa7.89□□□□□ -1.15
CPSF1-206ENST00000531480 PRR15Q8IV56 129 aa7.88□□□□□ -1.15
CPSF1-206ENST00000531480 C9orf92A6NGG3 77 aa7.87□□□□□ -1.15
CPSF1-206ENST00000531480 C8orf87E5RJ46 101 aa7.87□□□□□ -1.15
CPSF1-206ENST00000531480 DEFB116Q30KQ4 102 aa7.86□□□□□ -1.15
CPSF1-206ENST00000531480 DSCR10P59022 87 aa7.85□□□□□ -1.15
CPSF1-206ENST00000531480 MUC2Q02817 5179 aa7.84□□□□□ -1.15
CPSF1-206ENST00000531480 A0A1B0GVX0 72 aa7.84□□□□□ -1.15
CPSF1-206ENST00000531480 SMIM20Q8N5G0 67 aa7.84□□□□□ -1.15
CPSF1-206ENST00000531480 IGHV6-1A0A0B4J1U7 121 aa7.81□□□□□ -1.16
CPSF1-206ENST00000531480 HCG22E2RYF7 251 aa7.81□□□□□ -1.16
CPSF1-206ENST00000531480 K7EQZ3 153 aa7.81□□□□□ -1.16
CPSF1-206ENST00000531480 ATOX1O00244 68 aa7.81□□□□□ -1.16
CPSF1-206ENST00000531480 SEC61BP60468 96 aaKnown RBP7.81□□□□□ -1.16
CPSF1-206ENST00000531480 LINC00313P59037 77 aa7.8□□□□□ -1.16
CPSF1-206ENST00000531480 RPL37P61927 97 aaKnown RBP7.78□□□□□ -1.16
CPSF1-206ENST00000531480 CASC2Q6XLA1 102 aa7.78□□□□□ -1.16
CPSF1-206ENST00000531480 FAM236AA0A1B0GUQ0 79 aa7.77□□□□□ -1.17
CPSF1-206ENST00000531480 FAM236BA0A1B0GV22 79 aa7.77□□□□□ -1.17
CPSF1-206ENST00000531480 hDV103S1A0JD37 113 aa7.77□□□□□ -1.17
CPSF1-206ENST00000531480 Q8N9L7 120 aa7.77□□□□□ -1.17
CPSF1-206ENST00000531480 A0A0U1RQV1 116 aa7.76□□□□□ -1.17
CPSF1-206ENST00000531480 Q75L30 129 aa7.76□□□□□ -1.17
CPSF1-206ENST00000531480 C8orf17Q9NRJ1 99 aa7.76□□□□□ -1.17
CPSF1-206ENST00000531480 C20orf166-AS1Q96NR2 134 aa7.75□□□□□ -1.17
CPSF1-206ENST00000531480 FAT4Q6V0I7 4981 aa7.75□□□□□ -1.17
CPSF1-206ENST00000531480 A0A087WVE0 104 aa7.74□□□□□ -1.17
CPSF1-206ENST00000531480 TMEM254Q8TBM7 123 aa7.74□□□□□ -1.17
CPSF1-206ENST00000531480 KRTAP4-1Q9BYQ7 146 aa7.74□□□□□ -1.17
CPSF1-206ENST00000531480 TP53AIP1Q9HCN2 124 aa7.74□□□□□ -1.17
CPSF1-206ENST00000531480 KRTAP16-1A8MUX0 517 aa7.73□□□□□ -1.17
CPSF1-206ENST00000531480 A8MUU9 505 aa7.72□□□□□ -1.17
CPSF1-206ENST00000531480 NOTCH2NLQ7Z3S9 236 aa7.72□□□□□ -1.17
CPSF1-206ENST00000531480 PCOTHQ58A44 107 aa7.71□□□□□ -1.18
CPSF1-206ENST00000531480 MRPL34Q9BQ48 92 aaKnown RBP7.71□□□□□ -1.18
CPSF1-206ENST00000531480 MMP24-AS1A0A0U1RRL7 71 aa7.7□□□□□ -1.18
CPSF1-206ENST00000531480 WFDC13Q8IUB5 93 aa7.7□□□□□ -1.18
CPSF1-206ENST00000531480 ANAPC13Q9BS18 74 aa7.68□□□□□ -1.18
CPSF1-206ENST00000531480 TRAV7A0A075B6U4 112 aa7.67□□□□□ -1.18
CPSF1-206ENST00000531480 UQCRQO14949 82 aa7.67□□□□□ -1.18
CPSF1-206ENST00000531480 NDUFS5O43920 106 aa7.67□□□□□ -1.18
CPSF1-206ENST00000531480 KRTAP9-2Q9BYQ4 174 aa7.67□□□□□ -1.18
CPSF1-206ENST00000531480 SERP2Q8N6R1 65 aa7.65□□□□□ -1.18
CPSF1-206ENST00000531480 C5orf47Q569G3 176 aa7.64□□□□□ -1.19
CPSF1-206ENST00000531480 MP68P56378 58 aa7.63□□□□□ -1.19
CPSF1-206ENST00000531480 ATP11AUNQ6ZP68 121 aa7.63□□□□□ -1.19
CPSF1-206ENST00000531480 LCE2AQ5TA79 106 aaPredicted RBP7.61□□□□□ -1.19
CPSF1-206ENST00000531480 Q8N9P0 234 aaPredicted RBP7.61□□□□□ -1.19
CPSF1-206ENST00000531480 KRTAP9-6A0A140TA67 174 aa7.6□□□□□ -1.19
CPSF1-206ENST00000531480 H3BPC8 53 aa7.59□□□□□ -1.19
CPSF1-206ENST00000531480 OCR1Q9BZK8 76 aa7.59□□□□□ -1.19
CPSF1-206ENST00000531480 COX7CP15954 63 aa7.57□□□□□ -1.2
CPSF1-206ENST00000531480 KRTAP19-2Q3LHN2 52 aa7.56□□□□□ -1.2
CPSF1-206ENST00000531480 TRAV22A0A0B4J277 110 aa7.54□□□□□ -1.2
CPSF1-206ENST00000531480 PCP4P48539 62 aa7.53□□□□□ -1.2
CPSF1-206ENST00000531480 LCE2CQ5TA81 110 aa7.51□□□□□ -1.21
CPSF1-206ENST00000531480 H0Y9P7 68 aa7.5□□□□□ -1.21
CPSF1-206ENST00000531480 NDUFC1O43677 76 aa7.5□□□□□ -1.21
CPSF1-206ENST00000531480 ZCCHC13Q8WW36 166 aaKnown RBP7.49□□□□□ -1.21
CPSF1-206ENST00000531480 LOC101927531A0A1B0GV80 90 aa7.47□□□□□ -1.21
CPSF1-206ENST00000531480 C1orf64Q8NEQ6 169 aa7.46□□□□□ -1.22
CPSF1-206ENST00000531480 C20orf197Q8N268 126 aa7.45□□□□□ -1.22
CPSF1-206ENST00000531480 LINC00208Q96KT6 92 aa7.45□□□□□ -1.22
CPSF1-206ENST00000531480 KLKP1Q107X0 134 aa7.43□□□□□ -1.22
CPSF1-206ENST00000531480 MPLKIPQ8TAP9 179 aa7.4□□□□□ -1.22
CPSF1-206ENST00000531480 HRES1P13985 223 aa7.39□□□□□ -1.23
CPSF1-206ENST00000531480 C7orf65Q6ZTY9 151 aa7.38□□□□□ -1.23
CPSF1-206ENST00000531480 Q5W150 140 aa7.37□□□□□ -1.23
CPSF1-206ENST00000531480 CCDC179H3BU77 68 aa7.36□□□□□ -1.23
CPSF1-206ENST00000531480 SPINK7P58062 85 aa7.36□□□□□ -1.23
CPSF1-206ENST00000531480 MT1HP80294 61 aa7.36□□□□□ -1.23
CPSF1-206ENST00000531480 SNURFQ9Y675 71 aa7.36□□□□□ -1.23
CPSF1-206ENST00000531480 FLGP20930 4061 aaPredicted RBP7.34□□□□□ -1.23
CPSF1-206ENST00000531480 IGKV2-30P06310 120 aa7.34□□□□□ -1.23
CPSF1-206ENST00000531480 CYP4F30PQ9H0H9 118 aa7.34□□□□□ -1.23
CPSF1-206ENST00000531480 IGKV2D-30A0A075B6S6 120 aa7.33□□□□□ -1.24
CPSF1-206ENST00000531480 ATP5EP56381 51 aaPredicted RBP7.31□□□□□ -1.24
CPSF1-206ENST00000531480 COX6B2Q6YFQ2 88 aa7.31□□□□□ -1.24
CPSF1-206ENST00000531480 TMEM258P61165 79 aa7.29□□□□□ -1.24
CPSF1-206ENST00000531480 SPANXA2-OT1Q8N9U9 137 aa7.28□□□□□ -1.24
CPSF1-206ENST00000531480 RBM12B-AS1Q9P1G2 102 aa7.27□□□□□ -1.25
CPSF1-206ENST00000531480 FSIP2Q5CZC0 6907 aa7.25□□□□□ -1.25
CPSF1-206ENST00000531480 H7BZZ5 65 aa7.25□□□□□ -1.25
CPSF1-206ENST00000531480 A8MUN3 132 aa7.21□□□□□ -1.26
CPSF1-206ENST00000531480 LCE2DQ5TA82 110 aaPredicted RBP7.21□□□□□ -1.26
CPSF1-206ENST00000531480 FAM236DA0A1B0GTK5 79 aa7.19□□□□□ -1.26
CPSF1-206ENST00000531480 FAM236CP0DP71 79 aa7.19□□□□□ -1.26
CPSF1-206ENST00000531480 LORP23490 312 aaPredicted RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms