RNA–Protein interactions for RNA: ENST00000529919.5

CTNND1-222, Transcript of catenin delta 1, human

TSL 5 BASIC

Gene CTNND1, Length 4,780 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-222	ENST00000529919	KRTAP10-2	P60368	255 aa		4.82	□□□□□ -1.64
CTNND1-222	ENST00000529919	PLAC8	Q9NZF1	115 aa		4.82	□□□□□ -1.64
CTNND1-222	ENST00000529919	KRTAP10-1	P60331	282 aa		4.81	□□□□□ -1.64
CTNND1-222	ENST00000529919	TENM3	Q9P273	2699 aa		4.81	□□□□□ -1.64
CTNND1-222	ENST00000529919	NF1	P21359	2839 aa		4.8	□□□□□ -1.64
CTNND1-222	ENST00000529919	RPL37	P61927	97 aa	Known RBP	4.8	□□□□□ -1.64
CTNND1-222	ENST00000529919		R4GN34	69 aa		4.79	□□□□□ -1.64
CTNND1-222	ENST00000529919		M0R2T5	61 aa		4.77	□□□□□ -1.65
CTNND1-222	ENST00000529919		Q6ZR54	194 aa		4.77	□□□□□ -1.65
CTNND1-222	ENST00000529919		S4R3F8	94 aa		4.76	□□□□□ -1.65
CTNND1-222	ENST00000529919	KRTAP26-1	Q6PEX3	210 aa		4.76	□□□□□ -1.65
CTNND1-222	ENST00000529919	ROMO1	P60602	79 aa		4.75	□□□□□ -1.65
CTNND1-222	ENST00000529919	PKD1L1	Q8TDX9	2849 aa		4.73	□□□□□ -1.65
CTNND1-222	ENST00000529919	LOC400499	M0QZD8	3231 aa		4.73	□□□□□ -1.65
CTNND1-222	ENST00000529919	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.73	□□□□□ -1.65
CTNND1-222	ENST00000529919	TENM1	Q9UKZ4	2725 aa		4.72	□□□□□ -1.65
CTNND1-222	ENST00000529919	MXRA5	Q9NR99	2828 aa		4.72	□□□□□ -1.65
CTNND1-222	ENST00000529919	TENM2	Q9NT68	2774 aa		4.72	□□□□□ -1.65
CTNND1-222	ENST00000529919	H1FX-AS1	Q4G0G2	97 aa		4.71	□□□□□ -1.66
CTNND1-222	ENST00000529919	SPATA8	Q6RVD6	105 aa		4.7	□□□□□ -1.66
CTNND1-222	ENST00000529919	ASB16-AS1	Q495Z4	193 aa		4.69	□□□□□ -1.66
CTNND1-222	ENST00000529919	SMG1	Q96Q15	3661 aa	Known RBP	4.69	□□□□□ -1.66
CTNND1-222	ENST00000529919	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.69	□□□□□ -1.66
CTNND1-222	ENST00000529919	LAMA5	O15230	3695 aa		4.69	□□□□□ -1.66
CTNND1-222	ENST00000529919	FBN2	P35556	2912 aa		4.68	□□□□□ -1.66
CTNND1-222	ENST00000529919		M0QZ58	72 aa		4.67	□□□□□ -1.66
CTNND1-222	ENST00000529919	SEC61B	P60468	96 aa	Known RBP	4.67	□□□□□ -1.66
CTNND1-222	ENST00000529919	ZFHX3	Q15911	3703 aa		4.67	□□□□□ -1.66
CTNND1-222	ENST00000529919	PANO1	I0J062	215 aa		4.65	□□□□□ -1.66
CTNND1-222	ENST00000529919		A0A087X002	238 aa		4.65	□□□□□ -1.67
CTNND1-222	ENST00000529919	KRTAP16-1	A8MUX0	517 aa		4.65	□□□□□ -1.67
CTNND1-222	ENST00000529919	NOTCH2NL	Q7Z3S9	236 aa		4.65	□□□□□ -1.67
CTNND1-222	ENST00000529919		A6NN06	94 aa		4.64	□□□□□ -1.67
CTNND1-222	ENST00000529919	ADM2	Q7Z4H4	148 aa		4.63	□□□□□ -1.67
CTNND1-222	ENST00000529919		A8MU10	97 aa		4.62	□□□□□ -1.67
CTNND1-222	ENST00000529919	HRNR	Q86YZ3	2850 aa	Predicted RBP	4.61	□□□□□ -1.67
CTNND1-222	ENST00000529919		Q6ZRN7	208 aa	Predicted RBP	4.61	□□□□□ -1.67
CTNND1-222	ENST00000529919	KRTAP25-1	Q3LHN0	102 aa		4.6	□□□□□ -1.67
CTNND1-222	ENST00000529919	SPEN	Q96T58	3664 aa	Known RBP	4.58	□□□□□ -1.68
CTNND1-222	ENST00000529919	NDUFAF8	A1L188	74 aa		4.57	□□□□□ -1.68
CTNND1-222	ENST00000529919	BSN	Q9UPA5	3926 aa		4.57	□□□□□ -1.68
CTNND1-222	ENST00000529919	VWF	P04275	2813 aa		4.56	□□□□□ -1.68
CTNND1-222	ENST00000529919	RELN	P78509	3460 aa		4.55	□□□□□ -1.68
CTNND1-222	ENST00000529919	KRTAP11-1	Q8IUC1	163 aa		4.54	□□□□□ -1.68
CTNND1-222	ENST00000529919	CELSR1	Q9NYQ6	3014 aa		4.53	□□□□□ -1.68
CTNND1-222	ENST00000529919	SRRM2	Q9UQ35	2752 aa	Known RBP	4.52	□□□□□ -1.69
CTNND1-222	ENST00000529919	PLAC4	Q8WY50	150 aa		4.52	□□□□□ -1.69
CTNND1-222	ENST00000529919	FBN1	P35555	2871 aa	Known RBP	4.51	□□□□□ -1.69
CTNND1-222	ENST00000529919	TG	P01266	2768 aa		4.5	□□□□□ -1.69
CTNND1-222	ENST00000529919	KRTAP7-1	Q8IUC3	87 aa		4.5	□□□□□ -1.69
CTNND1-222	ENST00000529919	OTOG	Q6ZRI0	2925 aa		4.49	□□□□□ -1.69
CTNND1-222	ENST00000529919	PDZD2	O15018	2839 aa		4.49	□□□□□ -1.69
CTNND1-222	ENST00000529919		A8MUU9	505 aa		4.47	□□□□□ -1.69
CTNND1-222	ENST00000529919	C20orf166-AS1	Q96NR2	134 aa		4.46	□□□□□ -1.7
CTNND1-222	ENST00000529919	NBPF19	A0A087WUL8	3843 aa		4.43	□□□□□ -1.7
CTNND1-222	ENST00000529919	KRTAP13-2	Q52LG2	175 aa		4.42	□□□□□ -1.7
CTNND1-222	ENST00000529919	KRTAP13-1	Q8IUC0	172 aa		4.41	□□□□□ -1.7
CTNND1-222	ENST00000529919	RPS29	P62273	56 aa	Known RBP	4.4	□□□□□ -1.7
CTNND1-222	ENST00000529919	C10orf95	Q9H7T3	257 aa		4.36	□□□□□ -1.71
CTNND1-222	ENST00000529919	TNP1	P09430	55 aa		4.35	□□□□□ -1.71
CTNND1-222	ENST00000529919	CSMD2	Q7Z408	3487 aa		4.33	□□□□□ -1.72
CTNND1-222	ENST00000529919	CSMD1	Q96PZ7	3565 aa		4.33	□□□□□ -1.72
CTNND1-222	ENST00000529919	SVEP1	Q4LDE5	3571 aa		4.32	□□□□□ -1.72
CTNND1-222	ENST00000529919	AKAP9	Q99996	3911 aa		4.28	□□□□□ -1.72
CTNND1-222	ENST00000529919	CUBN	O60494	3623 aa		4.28	□□□□□ -1.72
CTNND1-222	ENST00000529919		H0YAA0	97 aa		4.27	□□□□□ -1.73
CTNND1-222	ENST00000529919		P0C880	135 aa		4.25	□□□□□ -1.73
CTNND1-222	ENST00000529919	PP632	Q6XCG6	107 aa		4.25	□□□□□ -1.73
CTNND1-222	ENST00000529919	KRTAP1-4	P0C5Y4	121 aa		4.25	□□□□□ -1.73
CTNND1-222	ENST00000529919	FBN3	Q75N90	2809 aa		4.24	□□□□□ -1.73
CTNND1-222	ENST00000529919		A0A1B0GVY2	172 aa		4.24	□□□□□ -1.73
CTNND1-222	ENST00000529919	KRTAP10-8	P60410	259 aa		4.22	□□□□□ -1.73
CTNND1-222	ENST00000529919	ZNF469	Q96JG9	3925 aa	Predicted RBP	4.2	□□□□□ -1.74
CTNND1-222	ENST00000529919	DNHD1	Q96M86	4753 aa		4.19	□□□□□ -1.74
CTNND1-222	ENST00000529919	VPS13C	Q709C8	3753 aa		4.19	□□□□□ -1.74
CTNND1-222	ENST00000529919	TPRXL	Q17RH7	258 aa		4.18	□□□□□ -1.74
CTNND1-222	ENST00000529919	XP32	Q5T750	250 aa		4.18	□□□□□ -1.74
CTNND1-222	ENST00000529919	COL7A1	Q02388	2944 aa		4.14	□□□□□ -1.75
CTNND1-222	ENST00000529919	KRTAP13-3	Q3SY46	172 aa		4.09	□□□□□ -1.76
CTNND1-222	ENST00000529919	KRTAP10-10	P60014	251 aa		4.07	□□□□□ -1.76
CTNND1-222	ENST00000529919	TRRAP	Q9Y4A5	3859 aa		4.05	□□□□□ -1.76
CTNND1-222	ENST00000529919	MEGF8	Q7Z7M0	2845 aa		4.01	□□□□□ -1.77
CTNND1-222	ENST00000529919	ANK3	Q12955	4377 aa	Known RBP	4.01	□□□□□ -1.77
CTNND1-222	ENST00000529919	ANK2	Q01484	3957 aa		3.98	□□□□□ -1.77
CTNND1-222	ENST00000529919	KRTAP12-2	P59991	146 aa		3.97	□□□□□ -1.77
CTNND1-222	ENST00000529919	PRO2289	Q9P1D8	64 aa		3.95	□□□□□ -1.78
CTNND1-222	ENST00000529919	KRTAP12-1	P59990	96 aa		3.91	□□□□□ -1.78
CTNND1-222	ENST00000529919	KRTAP4-5	Q9BYR2	181 aa		3.91	□□□□□ -1.78
CTNND1-222	ENST00000529919	KRTAP13-4	Q3LI77	160 aa		3.89	□□□□□ -1.79
CTNND1-222	ENST00000529919	MT1HL1	P0DM35	61 aa		3.86	□□□□□ -1.79
CTNND1-222	ENST00000529919	CMYA5	Q8N3K9	4069 aa		3.85	□□□□□ -1.79
CTNND1-222	ENST00000529919	KRTAP3-1	Q9BYR8	98 aa		3.85	□□□□□ -1.79
CTNND1-222	ENST00000529919	KRTAP10-6	P60371	365 aa	Predicted RBP	3.78	□□□□□ -1.8
CTNND1-222	ENST00000529919	PRKDC	P78527	4128 aa	Known RBP	3.74	□□□□□ -1.81
CTNND1-222	ENST00000529919	KRTAP15-1	Q3LI76	137 aa		3.74	□□□□□ -1.81
CTNND1-222	ENST00000529919	KRTAP10-4	P60372	401 aa	Predicted RBP	3.73	□□□□□ -1.81
CTNND1-222	ENST00000529919	KMT2C	Q8NEZ4	4911 aa	Known RBP	3.72	□□□□□ -1.81
CTNND1-222	ENST00000529919	DNAH3	Q8TD57	4116 aa		3.72	□□□□□ -1.81
CTNND1-222	ENST00000529919	DNAH1	Q9P2D7	4330 aa		3.71	□□□□□ -1.82
CTNND1-222	ENST00000529919	RYR3	Q15413	4870 aa		3.7	□□□□□ -1.82

Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms