RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ORMDL1Q9P0S3 153 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 HERC1Q15751 4861 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 DNAH11Q96DT5 4516 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 DNAH2Q9P225 4427 aa1.46□□□□□ -2.18
CD44-223ENST00000526553 TRBV7-3A0A075B6L6 115 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 IGKV2D-26A0A0A0MRZ7 120 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 TRAV21A0A0B4J279 112 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 hDV103S1A0JD37 113 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 IGHV3-33P01772 117 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 CCKP06307 115 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 SNRPD3P62318 126 aaKnown RBP1.45□□□□□ -2.18
CD44-223ENST00000526553 C1orf134Q5TEV5 83 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 MINOS1Q5TGZ0 78 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 C20orf197Q8N268 126 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 ZC2HC1AQ96GY0 325 aa1.45□□□□□ -2.18
CD44-223ENST00000526553 HSPG2P98160 4391 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 FAT2Q9NYQ8 4349 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 TRAV23DV6A0A075B6W5 121 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 IGHV3-30P01768 117 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 SAA2P0DJI9 122 aaPredicted RBP1.44□□□□□ -2.18
CD44-223ENST00000526553 IGHV3-30-5P0DP03 117 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 RPS27P42677 84 aaKnown RBP1.44□□□□□ -2.18
CD44-223ENST00000526553 ELOF1P60002 83 aaKnown RBP1.44□□□□□ -2.18
CD44-223ENST00000526553 KRTAP26-1Q6PEX3 210 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 Q6ZSA8 131 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 ODF3Q96PU9 254 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 TMEM14BQ9NUH8 114 aa1.44□□□□□ -2.18
CD44-223ENST00000526553 PKD1P98161 4303 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 A0A0J9YY99 117 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 NUPR2A6NF83 97 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 IGLV3-1P01715 115 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 ARMS2P0C7Q2 107 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 PIGYQ3MUY2 71 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 Q86TA4 180 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 C5orf56Q8N8D9 126 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 TMEM263Q8WUH6 116 aaKnown RBP1.43□□□□□ -2.18
CD44-223ENST00000526553 LEAP2Q969E1 77 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 DIRC1Q969H9 104 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 CDC42SE1Q9NRR8 79 aa1.43□□□□□ -2.18
CD44-223ENST00000526553 UBR4Q5T4S7 5183 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 TRBV6-4A0A1B0GX49 114 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 F8WEM9 126 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 I3L3M4 83 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 HAMPP81172 84 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 GDF5OSQ5U4N7 250 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 Q5XG85 94 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 CASC2Q6XLA1 102 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 LINC00269Q8N2A0 174 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 TMEM167AQ8TBQ9 72 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 FAM167A-AS1Q96KT0 104 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 AMELXQ99217 191 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 CNFNQ9BYD5 112 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 NDUFA12Q9UI09 145 aa1.42□□□□□ -2.18
CD44-223ENST00000526553 APOBP04114 4563 aaKnown RBP1.42□□□□□ -2.18
CD44-223ENST00000526553 LRP1BQ9NZR2 4599 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 TRAV12-3A0A0B4J271 114 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 G3V318 75 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 CHKB-CPT1BH3BT56 60 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 NREPQ16612 68 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 Q8N6K4 173 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 SPTSSBQ8NFR3 76 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 WFDC10AQ9H1F0 79 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 NDUFA4L2Q9NRX3 87 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 UBE2D4Q9Y2X8 147 aa1.41□□□□□ -2.18
CD44-223ENST00000526553 DMBT1Q9UGM3 2413 aaPredicted RBP1.41□□□□□ -2.18
CD44-223ENST00000526553 VPS13BQ7Z7G8 4022 aa1.4□□□□□ -2.18
CD44-223ENST00000526553 SRRM2Q9UQ35 2752 aaKnown RBP1.4□□□□□ -2.19
CD44-223ENST00000526553 MGPP08493 103 aa1.4□□□□□ -2.19
CD44-223ENST00000526553 COX17Q14061 63 aa1.4□□□□□ -2.19
CD44-223ENST00000526553 DEFB135Q30KP9 77 aa1.4□□□□□ -2.19
CD44-223ENST00000526553 DEFB114Q30KQ6 69 aa1.4□□□□□ -2.19
CD44-223ENST00000526553 C9orf116Q5BN46 136 aaPredicted RBP1.4□□□□□ -2.19
CD44-223ENST00000526553 UBE2DNLQ8IWF7 75 aa1.4□□□□□ -2.19
CD44-223ENST00000526553 Q8TAT8 98 aa1.4□□□□□ -2.19
CD44-223ENST00000526553 DNAH5Q8TE73 4624 aa1.4□□□□□ -2.19
CD44-223ENST00000526553 MYCBP2O75592 4640 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 FLG2Q5D862 2391 aaPredicted RBP1.39□□□□□ -2.19
CD44-223ENST00000526553 HCG22E2RYF7 251 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 H7BZZ5 65 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 NDUFA1O15239 70 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 DEFB4AO15263 64 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 LYPD5Q6UWN5 251 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 ENHOQ6UWT2 76 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 LINC00322Q6ZN03 302 aaPredicted RBP1.39□□□□□ -2.19
CD44-223ENST00000526553 LINC00308Q8TCZ7 52 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 CLEC2BQ92478 149 aa1.39□□□□□ -2.19
CD44-223ENST00000526553 FAM223BA6NKX1 122 aa1.38□□□□□ -2.19
CD44-223ENST00000526553 APELAP0DMC3 54 aa1.38□□□□□ -2.19
CD44-223ENST00000526553 LINC00158P58513 81 aa1.38□□□□□ -2.19
CD44-223ENST00000526553 SPINK9Q5DT21 86 aa1.38□□□□□ -2.19
CD44-223ENST00000526553 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.38□□□□□ -2.19
CD44-223ENST00000526553 APLNQ9ULZ1 77 aa1.38□□□□□ -2.19
CD44-223ENST00000526553 LOC101927531A0A1B0GV80 90 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 ETDCA0A1B0GVM5 59 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 IGIPA6NJ69 53 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 K7EIM0 57 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 POLR2KP53803 58 aaKnown RBP1.37□□□□□ -2.19
CD44-223ENST00000526553 SPAG11BQ08648 103 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 SPAG11AQ6PDA7 123 aa1.37□□□□□ -2.19
CD44-223ENST00000526553 FAM223AQ8IWN6 122 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms