RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 A0A1B0GU69 56 aa1.74□□□□□ -2.13
CD44-217ENST00000525348 Q8IZM0 81 aa1.74□□□□□ -2.13
CD44-217ENST00000525348 KNL1Q8NG31 2342 aa1.74□□□□□ -2.13
CD44-217ENST00000525348 MTORP42345 2549 aa1.74□□□□□ -2.13
CD44-217ENST00000525348 VPS13CQ709C8 3753 aa1.74□□□□□ -2.13
CD44-217ENST00000525348 STATHP02808 62 aa1.73□□□□□ -2.13
CD44-217ENST00000525348 COX6A2Q02221 97 aa1.73□□□□□ -2.13
CD44-217ENST00000525348 C5orf56Q8N8D9 126 aa1.73□□□□□ -2.13
CD44-217ENST00000525348 PRO2289Q9P1D8 64 aa1.73□□□□□ -2.13
CD44-217ENST00000525348 RYR3Q15413 4870 aa1.73□□□□□ -2.13
CD44-217ENST00000525348 PRRC2CQ9Y520 2896 aaKnown RBP1.73□□□□□ -2.13
CD44-217ENST00000525348 IGLV7-43P04211 117 aa1.72□□□□□ -2.13
CD44-217ENST00000525348 WT1-ASQ06250 92 aa1.72□□□□□ -2.13
CD44-217ENST00000525348 RPL39P5Q59GN2 51 aa1.72□□□□□ -2.13
CD44-217ENST00000525348 MEGF8Q7Z7M0 2845 aa1.72□□□□□ -2.13
CD44-217ENST00000525348 CCDC168Q8NDH2 2452 aa1.71□□□□□ -2.14
CD44-217ENST00000525348 A0A1W2PNN7 141 aa1.71□□□□□ -2.14
CD44-217ENST00000525348 M0QY20 66 aa1.71□□□□□ -2.14
CD44-217ENST00000525348 TPRXLQ17RH7 258 aa1.71□□□□□ -2.14
CD44-217ENST00000525348 TMEM167AQ8TBQ9 72 aa1.71□□□□□ -2.14
CD44-217ENST00000525348 DEFB104AQ8WTQ1 72 aa1.71□□□□□ -2.14
CD44-217ENST00000525348 CCL19Q99731 98 aa1.71□□□□□ -2.14
CD44-217ENST00000525348 ANK2Q01484 3957 aa1.71□□□□□ -2.14
CD44-217ENST00000525348 PKDREJQ9NTG1 2253 aa1.7□□□□□ -2.14
CD44-217ENST00000525348 ANK3Q12955 4377 aaKnown RBP1.7□□□□□ -2.14
CD44-217ENST00000525348 DEFB108AA8MXU0 73 aa1.7□□□□□ -2.14
CD44-217ENST00000525348 K7EQZ3 153 aa1.7□□□□□ -2.14
CD44-217ENST00000525348 IGLV6-57P01721 117 aa1.7□□□□□ -2.14
CD44-217ENST00000525348 FLNAP21333 2647 aaKnown RBP1.7□□□□□ -2.14
CD44-217ENST00000525348 ATRQ13535 2644 aa1.7□□□□□ -2.14
CD44-217ENST00000525348 PLCE1Q9P212 2302 aa1.7□□□□□ -2.14
CD44-217ENST00000525348 EPPK1P58107 5090 aaKnown RBP1.7□□□□□ -2.14
CD44-217ENST00000525348 ACANP16112 2415 aa1.7□□□□□ -2.14
CD44-217ENST00000525348 TGP01266 2768 aa1.7□□□□□ -2.14
CD44-217ENST00000525348 CSPG4Q6UVK1 2322 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 HRNRQ86YZ3 2850 aaPredicted RBP1.69□□□□□ -2.14
CD44-217ENST00000525348 MXRA5Q9NR99 2828 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 A0A0G2JQZ4 141 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 RPL37AP61513 92 aaKnown RBP1.69□□□□□ -2.14
CD44-217ENST00000525348 COX17Q14061 63 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 DEFB110Q30KQ9 67 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 SPACA4Q8TDM5 124 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 BIRC6Q9NR09 4857 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 CNTRLQ7Z7A1 2325 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 NSD1Q96L73 2696 aaPredicted RBP1.69□□□□□ -2.14
CD44-217ENST00000525348 COL6A5A8TX70 2615 aa1.69□□□□□ -2.14
CD44-217ENST00000525348 MAP1AP78559 2803 aaPredicted RBP1.68□□□□□ -2.14
CD44-217ENST00000525348 ABCA1O95477 2261 aa1.68□□□□□ -2.14
CD44-217ENST00000525348 NBEAL2Q6ZNJ1 2754 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 KMT2CQ8NEZ4 4911 aaKnown RBP1.67□□□□□ -2.14
CD44-217ENST00000525348 IGLV5-48A0A075B6I7 105 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 G3V318 75 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 ANGP03950 147 aaKnown RBP1.67□□□□□ -2.14
CD44-217ENST00000525348 DEFB134Q4QY38 66 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 C10orf55Q5SWW7 151 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 CRIPTQ9P021 101 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 R4GN34 69 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 PKD1L1Q8TDX9 2849 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 HYDINQ4G0P3 5121 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 RP1L1Q8IWN7 2480 aaPredicted RBP1.67□□□□□ -2.14
CD44-217ENST00000525348 STAB1Q9NY15 2570 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 SVEP1Q4LDE5 3571 aa1.67□□□□□ -2.14
CD44-217ENST00000525348 JMJD1CQ15652 2540 aa1.66□□□□□ -2.14
CD44-217ENST00000525348 K7EIM0 57 aa1.66□□□□□ -2.14
CD44-217ENST00000525348 MRPL33O75394 65 aaKnown RBP1.66□□□□□ -2.14
CD44-217ENST00000525348 LY6G6CO95867 125 aa1.66□□□□□ -2.14
CD44-217ENST00000525348 PCOTHQ58A44 107 aa1.66□□□□□ -2.14
CD44-217ENST00000525348 SSBP3-AS1Q7Z2R9 100 aa1.66□□□□□ -2.14
CD44-217ENST00000525348 WFDC13Q8IUB5 93 aa1.66□□□□□ -2.14
CD44-217ENST00000525348 LYNX1G3V0Z9 82 aa1.65□□□□□ -2.15
CD44-217ENST00000525348 ACYP2P14621 99 aa1.65□□□□□ -2.15
CD44-217ENST00000525348 PSORS1C2Q9UIG4 136 aa1.65□□□□□ -2.15
CD44-217ENST00000525348 PCLOQ9Y6V0 5065 aa1.64□□□□□ -2.15
CD44-217ENST00000525348 IGKV2-24A0A0C4DH68 120 aa1.64□□□□□ -2.15
CD44-217ENST00000525348 C4orf3Q8WVX3 66 aa1.64□□□□□ -2.15
CD44-217ENST00000525348 COX14Q96I36 57 aa1.64□□□□□ -2.15
CD44-217ENST00000525348 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.64□□□□□ -2.15
CD44-217ENST00000525348 CMYA5Q8N3K9 4069 aa1.64□□□□□ -2.15
CD44-217ENST00000525348 TRRAPQ9Y4A5 3859 aa1.64□□□□□ -2.15
CD44-217ENST00000525348 HMCN1Q96RW7 5635 aa1.63□□□□□ -2.15
CD44-217ENST00000525348 PRKDCP78527 4128 aaKnown RBP1.63□□□□□ -2.15
CD44-217ENST00000525348 A8MTW9 85 aa1.63□□□□□ -2.15
CD44-217ENST00000525348 H0YAA0 97 aa1.63□□□□□ -2.15
CD44-217ENST00000525348 H0YGG7 62 aa1.63□□□□□ -2.15
CD44-217ENST00000525348 TLN2Q9Y4G6 2542 aa1.63□□□□□ -2.15
CD44-217ENST00000525348 ZANQ9Y493 2812 aa1.62□□□□□ -2.15
CD44-217ENST00000525348 RYR2Q92736 4967 aa1.62□□□□□ -2.15
CD44-217ENST00000525348 AKAP6Q13023 2319 aa1.62□□□□□ -2.15
CD44-217ENST00000525348 TENM1Q9UKZ4 2725 aa1.61□□□□□ -2.15
CD44-217ENST00000525348 Q6ZRX8 168 aa1.61□□□□□ -2.15
CD44-217ENST00000525348 WFDC10BQ8IUB3 73 aa1.61□□□□□ -2.15
CD44-217ENST00000525348 TP53AIP1Q9HCN2 124 aa1.61□□□□□ -2.15
CD44-217ENST00000525348 CRCT1Q9UGL9 99 aa1.61□□□□□ -2.15
CD44-217ENST00000525348 SONP18583 2426 aaKnown RBP1.61□□□□□ -2.15
CD44-217ENST00000525348 MGAM2Q2M2H8 2515 aa1.6□□□□□ -2.15
CD44-217ENST00000525348 GVQW2A0A096LPI5 108 aaPredicted RBP1.6□□□□□ -2.15
CD44-217ENST00000525348 MMP24-AS1A0A0U1RRL7 71 aa1.6□□□□□ -2.15
CD44-217ENST00000525348 MINOS1Q5TGZ0 78 aa1.6□□□□□ -2.15
CD44-217ENST00000525348 Q6ZSA8 131 aa1.6□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms