RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 Q5VSD8 79 aa0.51□□□□□ -2.33
CPNE3-207ENST00000523588 WNK1Q9H4A3 2382 aa0.5□□□□□ -2.33
CPNE3-207ENST00000523588 SPINK1P00995 79 aa0.5□□□□□ -2.33
CPNE3-207ENST00000523588 SPINK6Q6UWN8 80 aa0.5□□□□□ -2.33
CPNE3-207ENST00000523588 CACNA1HO95180 2353 aa0.5□□□□□ -2.33
CPNE3-207ENST00000523588 BSNQ9UPA5 3926 aa0.5□□□□□ -2.33
CPNE3-207ENST00000523588 NBPF19A0A087WUL8 3843 aa0.5□□□□□ -2.33
CPNE3-207ENST00000523588 SONP18583 2426 aaKnown RBP0.49□□□□□ -2.33
CPNE3-207ENST00000523588 ABCA2Q9BZC7 2435 aa0.49□□□□□ -2.33
CPNE3-207ENST00000523588 APELAP0DMC3 54 aa0.49□□□□□ -2.33
CPNE3-207ENST00000523588 KRTAP20-1Q3LI63 56 aa0.49□□□□□ -2.33
CPNE3-207ENST00000523588 HMCN2Q8NDA2 5059 aa0.49□□□□□ -2.33
CPNE3-207ENST00000523588 SPTA1P02549 2419 aa0.49□□□□□ -2.33
CPNE3-207ENST00000523588 EP300Q09472 2414 aaPredicted RBP0.48□□□□□ -2.33
CPNE3-207ENST00000523588 GVINP1Q7Z2Y8 2422 aa0.48□□□□□ -2.33
CPNE3-207ENST00000523588 PIEZO2Q9H5I5 2752 aa0.48□□□□□ -2.33
CPNE3-207ENST00000523588 DEFB1P60022 68 aa0.48□□□□□ -2.33
CPNE3-207ENST00000523588 F8P00451 2351 aa0.48□□□□□ -2.33
CPNE3-207ENST00000523588 NSD1Q96L73 2696 aaPredicted RBP0.48□□□□□ -2.33
CPNE3-207ENST00000523588 ABCA12Q86UK0 2595 aa0.47□□□□□ -2.33
CPNE3-207ENST00000523588 H0YGG7 62 aa0.47□□□□□ -2.33
CPNE3-207ENST00000523588 NOP10Q9NPE3 64 aaKnown RBP0.47□□□□□ -2.33
CPNE3-207ENST00000523588 CREBBPQ92793 2442 aa0.47□□□□□ -2.33
CPNE3-207ENST00000523588 DMBT1Q9UGM3 2413 aaPredicted RBP0.47□□□□□ -2.33
CPNE3-207ENST00000523588 REV3LO60673 3130 aa0.47□□□□□ -2.33
CPNE3-207ENST00000523588 VPS13DQ5THJ4 4388 aa0.46□□□□□ -2.34
CPNE3-207ENST00000523588 COX14Q96I36 57 aa0.46□□□□□ -2.34
CPNE3-207ENST00000523588 TENM4Q6N022 2769 aa0.46□□□□□ -2.34
CPNE3-207ENST00000523588 NAV2Q8IVL1 2488 aa0.45□□□□□ -2.34
CPNE3-207ENST00000523588 PRRC2CQ9Y520 2896 aaKnown RBP0.45□□□□□ -2.34
CPNE3-207ENST00000523588 SETD2Q9BYW2 2564 aaPredicted RBP0.45□□□□□ -2.34
CPNE3-207ENST00000523588 CEP290O15078 2479 aa0.45□□□□□ -2.34
CPNE3-207ENST00000523588 CCDC168Q8NDH2 2452 aa0.45□□□□□ -2.34
CPNE3-207ENST00000523588 DSPP15924 2871 aaKnown RBP0.45□□□□□ -2.34
CPNE3-207ENST00000523588 AKAP9Q99996 3911 aa0.45□□□□□ -2.34
CPNE3-207ENST00000523588 CSMD3Q7Z407 3707 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 DNAH7Q8WXX0 4024 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 LYSTQ99698 3801 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 BDP1A6H8Y1 2624 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 RHPN1-AS1Q9BWJ2 59 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 DNAH11Q96DT5 4516 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 APC2O95996 2303 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 VPS13BQ7Z7G8 4022 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 HIVEP1P15822 2718 aa0.44□□□□□ -2.34
CPNE3-207ENST00000523588 NBASA2RRP1 2371 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 KMT2AQ03164 3969 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 CELSR2Q9HCU4 2923 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 CEP250Q9BV73 2442 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 H3BUX3 64 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 M0QZ58 72 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 HTN1P15515 57 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 DEFB136Q30KP8 78 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 FLNAP21333 2647 aaKnown RBP0.43□□□□□ -2.34
CPNE3-207ENST00000523588 CELSR1Q9NYQ6 3014 aa0.43□□□□□ -2.34
CPNE3-207ENST00000523588 ANK2Q01484 3957 aa0.42□□□□□ -2.34
CPNE3-207ENST00000523588 DEFB110Q30KQ9 67 aa0.42□□□□□ -2.34
CPNE3-207ENST00000523588 DEFB108BQ8NET1 73 aa0.42□□□□□ -2.34
CPNE3-207ENST00000523588 CHD7Q9P2D1 2997 aa0.42□□□□□ -2.34
CPNE3-207ENST00000523588 PDZD2O15018 2839 aa0.42□□□□□ -2.34
CPNE3-207ENST00000523588 PRKDCP78527 4128 aaKnown RBP0.41□□□□□ -2.34
CPNE3-207ENST00000523588 MGAQ8IWI9 3026 aa0.41□□□□□ -2.34
CPNE3-207ENST00000523588 FAT2Q9NYQ8 4349 aa0.41□□□□□ -2.34
CPNE3-207ENST00000523588 HIVEP3Q5T1R4 2406 aa0.41□□□□□ -2.34
CPNE3-207ENST00000523588 A0A096LNI7 61 aa0.41□□□□□ -2.34
CPNE3-207ENST00000523588 PIEZO1Q92508 2521 aa0.41□□□□□ -2.34
CPNE3-207ENST00000523588 MAP1BP46821 2468 aaKnown RBP0.41□□□□□ -2.34
CPNE3-207ENST00000523588 DNAH3Q8TD57 4116 aa0.4□□□□□ -2.34
CPNE3-207ENST00000523588 TENM2Q9NT68 2774 aa0.4□□□□□ -2.34
CPNE3-207ENST00000523588 STAB2Q8WWQ8 2551 aa0.4□□□□□ -2.35
CPNE3-207ENST00000523588 DEFB135Q30KP9 77 aa0.4□□□□□ -2.35
CPNE3-207ENST00000523588 A0A0C4DFX4 3053 aa0.4□□□□□ -2.35
CPNE3-207ENST00000523588 ZFHX4Q86UP3 3567 aa0.4□□□□□ -2.35
CPNE3-207ENST00000523588 SETXQ7Z333 2677 aaKnown RBP0.4□□□□□ -2.35
CPNE3-207ENST00000523588 CMYA5Q8N3K9 4069 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 FAM186AA6NE01 2351 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 MYCBP2O75592 4640 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 ZNF292O60281 2723 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 SACSQ9NZJ4 4579 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 SZT2Q5T011 3432 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 MUC12Q9UKN1 5478 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 PKHD1L1Q86WI1 4243 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 CHD8Q9HCK8 2581 aa0.39□□□□□ -2.35
CPNE3-207ENST00000523588 SPTBN5Q9NRC6 3674 aaKnown RBP0.39□□□□□ -2.35
CPNE3-207ENST00000523588 HECTD1Q9ULT8 2610 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 ANK3Q12955 4377 aaKnown RBP0.38□□□□□ -2.35
CPNE3-207ENST00000523588 SPENQ96T58 3664 aaKnown RBP0.38□□□□□ -2.35
CPNE3-207ENST00000523588 UBR5O95071 2799 aaPredicted RBP0.38□□□□□ -2.35
CPNE3-207ENST00000523588 POLQO75417 2590 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 RIF1Q5UIP0 2472 aaKnown RBP0.38□□□□□ -2.35
CPNE3-207ENST00000523588 A0A096LPF7 62 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 M0R2T5 61 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 TNP1P09430 55 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 SPART-AS1P0CW21 52 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 DEFB124Q8NES8 71 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 TRRAPQ9Y4A5 3859 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 DYNC2H1Q8NCM8 4307 aaKnown RBP0.38□□□□□ -2.35
CPNE3-207ENST00000523588 COL12A1Q99715 3063 aa0.38□□□□□ -2.35
CPNE3-207ENST00000523588 TNRC18O15417 2968 aaPredicted RBP0.38□□□□□ -2.35
CPNE3-207ENST00000523588 SPG11Q96JI7 2443 aa0.37□□□□□ -2.35
CPNE3-207ENST00000523588 HECTD4Q9Y4D8 3996 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms