RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CMC4P56277 68 aaPredicted RBP3.51□□□□□ -1.85
NUP54-218ENST00000515460 Q8NAQ8 132 aa3.51□□□□□ -1.85
NUP54-218ENST00000515460 PLAC8Q9NZF1 115 aa3.51□□□□□ -1.85
NUP54-218ENST00000515460 IGKV2-28A0A075B6P5 120 aa3.5□□□□□ -1.85
NUP54-218ENST00000515460 RTL8CO15255 209 aa3.5□□□□□ -1.85
NUP54-218ENST00000515460 IGKV2D-28P01615 120 aa3.5□□□□□ -1.85
NUP54-218ENST00000515460 DEFB131AP59861 70 aa3.5□□□□□ -1.85
NUP54-218ENST00000515460 Q6ZTI0 123 aa3.5□□□□□ -1.85
NUP54-218ENST00000515460 TRGV2A0A075B6R0 118 aa3.49□□□□□ -1.85
NUP54-218ENST00000515460 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.49□□□□□ -1.85
NUP54-218ENST00000515460 IGHV3-66A0A0C4DH42 116 aa3.49□□□□□ -1.85
NUP54-218ENST00000515460 TRBV6-4A0A1B0GX49 114 aa3.49□□□□□ -1.85
NUP54-218ENST00000515460 M0QY20 66 aa3.49□□□□□ -1.85
NUP54-218ENST00000515460 CNBPP62633 177 aaKnown RBP3.49□□□□□ -1.85
NUP54-218ENST00000515460 LINC00242Q5T6M2 205 aa3.49□□□□□ -1.85
NUP54-218ENST00000515460 CSNK1G2-AS1Q8NCQ2 148 aa3.49□□□□□ -1.85
NUP54-218ENST00000515460 COX7B2Q8TF08 81 aa3.49□□□□□ -1.85
NUP54-218ENST00000515460 KRTAP4-3Q9BYR4 195 aa3.49□□□□□ -1.85
NUP54-218ENST00000515460 K7EQD1 137 aa3.48□□□□□ -1.85
NUP54-218ENST00000515460 M0R2N4 97 aa3.48□□□□□ -1.85
NUP54-218ENST00000515460 IGHV3-53P01767 116 aa3.48□□□□□ -1.85
NUP54-218ENST00000515460 RNASE3P12724 160 aaKnown RBP3.48□□□□□ -1.85
NUP54-218ENST00000515460 COX7BP24311 80 aa3.48□□□□□ -1.85
NUP54-218ENST00000515460 Q5VSD8 79 aa3.48□□□□□ -1.85
NUP54-218ENST00000515460 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.48□□□□□ -1.85
NUP54-218ENST00000515460 KCNQ1DNQ9H478 68 aa3.48□□□□□ -1.85
NUP54-218ENST00000515460 CDKN2A-AS1Q9UH64 79 aa3.48□□□□□ -1.85
NUP54-218ENST00000515460 DEFB131BA0A096LNP1 70 aa3.47□□□□□ -1.85
NUP54-218ENST00000515460 IGLV4-60A0A075B6I1 120 aa3.46□□□□□ -1.86
NUP54-218ENST00000515460 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.46□□□□□ -1.86
NUP54-218ENST00000515460 Q6ZR54 194 aa3.46□□□□□ -1.86
NUP54-218ENST00000515460 ZFAND2AQ8N6M9 145 aa3.46□□□□□ -1.86
NUP54-218ENST00000515460 FAM104AQ969W3 186 aa3.46□□□□□ -1.86
NUP54-218ENST00000515460 CCL18P55774 89 aa3.45□□□□□ -1.86
NUP54-218ENST00000515460 ROMO1P60602 79 aa3.45□□□□□ -1.86
NUP54-218ENST00000515460 SPAG11BQ08648 103 aa3.45□□□□□ -1.86
NUP54-218ENST00000515460 LCE3AQ5TA76 89 aa3.45□□□□□ -1.86
NUP54-218ENST00000515460 C1orf134Q5TEV5 83 aa3.45□□□□□ -1.86
NUP54-218ENST00000515460 LINC00575Q6W349 94 aa3.45□□□□□ -1.86
NUP54-218ENST00000515460 TNXBP22105 4242 aa3.44□□□□□ -1.86
NUP54-218ENST00000515460 H0Y9P7 68 aa3.44□□□□□ -1.86
NUP54-218ENST00000515460 DEFB1P60022 68 aa3.44□□□□□ -1.86
NUP54-218ENST00000515460 SPART-AS1P0CW21 52 aa3.43□□□□□ -1.86
NUP54-218ENST00000515460 PRR9Q5T870 116 aa3.43□□□□□ -1.86
NUP54-218ENST00000515460 SPAG11AQ6PDA7 123 aa3.43□□□□□ -1.86
NUP54-218ENST00000515460 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.43□□□□□ -1.86
NUP54-218ENST00000515460 COA5Q86WW8 74 aa3.43□□□□□ -1.86
NUP54-218ENST00000515460 CHCHD7Q9BUK0 85 aa3.43□□□□□ -1.86
NUP54-218ENST00000515460 A0A1W2PNM2 257 aa3.42□□□□□ -1.86
NUP54-218ENST00000515460 LINC00158P58513 81 aa3.42□□□□□ -1.86
NUP54-218ENST00000515460 KRTAP12-2P59991 146 aa3.42□□□□□ -1.86
NUP54-218ENST00000515460 Q8N377 158 aa3.42□□□□□ -1.86
NUP54-218ENST00000515460 Q8NBF4 154 aa3.42□□□□□ -1.86
NUP54-218ENST00000515460 IGHV3OR16-12A0A075B7B8 117 aa3.41□□□□□ -1.86
NUP54-218ENST00000515460 HIGD2BQ4VC39 106 aa3.41□□□□□ -1.86
NUP54-218ENST00000515460 UBE2DNLQ8IWF7 75 aa3.41□□□□□ -1.86
NUP54-218ENST00000515460 HTN3P15516 51 aa3.4□□□□□ -1.87
NUP54-218ENST00000515460 LINC00612Q8N6U2 182 aa3.4□□□□□ -1.87
NUP54-218ENST00000515460 PRR34Q9NV39 138 aa3.4□□□□□ -1.87
NUP54-218ENST00000515460 NBDYA0A0U1RRE5 68 aa3.39□□□□□ -1.87
NUP54-218ENST00000515460 A8MTW9 85 aa3.39□□□□□ -1.87
NUP54-218ENST00000515460 SMR3BP02814 79 aaPredicted RBP3.39□□□□□ -1.87
NUP54-218ENST00000515460 SPINK7P58062 85 aa3.39□□□□□ -1.87
NUP54-218ENST00000515460 REG3AQ06141 175 aa3.39□□□□□ -1.87
NUP54-218ENST00000515460 PRR4Q16378 134 aa3.39□□□□□ -1.87
NUP54-218ENST00000515460 KRTAP13-3Q3SY46 172 aa3.39□□□□□ -1.87
NUP54-218ENST00000515460 CSAG1Q6PB30 78 aa3.39□□□□□ -1.87
NUP54-218ENST00000515460 SSPOA2VEC9 5147 aa3.38□□□□□ -1.87
NUP54-218ENST00000515460 TRGV4A0A0C4DH28 118 aa3.38□□□□□ -1.87
NUP54-218ENST00000515460 COX6A2Q02221 97 aa3.38□□□□□ -1.87
NUP54-218ENST00000515460 COX17Q14061 63 aa3.38□□□□□ -1.87
NUP54-218ENST00000515460 ADM2Q7Z4H4 148 aa3.38□□□□□ -1.87
NUP54-218ENST00000515460 C9orf163Q8N9P6 203 aa3.38□□□□□ -1.87
NUP54-218ENST00000515460 LPAP08519 4548 aa3.38□□□□□ -1.87
NUP54-218ENST00000515460 DNAH8Q96JB1 4490 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 A0A087WSZ3 146 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 DEFB130BP0DP73 79 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 DEFB130AP0DP74 79 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 MIR22HGQ0VDD5 57 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 SPATA8Q6RVD6 105 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 REG3GQ6UW15 175 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 Q6ZQY7 126 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 Q8NDZ9 215 aa3.37□□□□□ -1.87
NUP54-218ENST00000515460 SPINK13Q1W4C9 94 aa3.36□□□□□ -1.87
NUP54-218ENST00000515460 Q8N9L7 120 aa3.36□□□□□ -1.87
NUP54-218ENST00000515460 ST20-AS1Q8NBB2 130 aa3.36□□□□□ -1.87
NUP54-218ENST00000515460 SYNE2Q8WXH0 6885 aaKnown RBP3.34□□□□□ -1.87
NUP54-218ENST00000515460 K7ERS5 55 aa3.34□□□□□ -1.87
NUP54-218ENST00000515460 NOP10Q9NPE3 64 aaKnown RBP3.34□□□□□ -1.87
NUP54-218ENST00000515460 LINC00959A0A1B0GUT2 108 aa3.33□□□□□ -1.88
NUP54-218ENST00000515460 UQCR11O14957 56 aa3.33□□□□□ -1.88
NUP54-218ENST00000515460 INSP01308 110 aa3.33□□□□□ -1.88
NUP54-218ENST00000515460 DNAH10OSP0CZ25 163 aa3.33□□□□□ -1.88
NUP54-218ENST00000515460 HTN1P15515 57 aa3.33□□□□□ -1.88
NUP54-218ENST00000515460 Q6ZRN7 208 aaPredicted RBP3.33□□□□□ -1.88
NUP54-218ENST00000515460 Q8IZM0 81 aa3.33□□□□□ -1.88
NUP54-218ENST00000515460 DEFB104AQ8WTQ1 72 aa3.33□□□□□ -1.88
NUP54-218ENST00000515460 IGKV2D-24A0A075B6R9 120 aa3.32□□□□□ -1.88
NUP54-218ENST00000515460 KRTAP10-8P60410 259 aa3.32□□□□□ -1.88
NUP54-218ENST00000515460 KRTAP25-1Q3LHN0 102 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms